KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:49 2014 Check: 00 .. Name: ENSP00000363529/1-747 Len: 750 Check: 4865 Weight: 1.00 Name: ENSBTAP00000008235/1-747 Len: 750 Check: 3443 Weight: 1.00 Name: ENSTTRP00000016130/1-684 Len: 750 Check: 5259 Weight: 1.00 Name: bmy_00583T0/1-710 Len: 750 Check: 513 Weight: 1.00 Name: BACU015535/1-734 Len: 750 Check: 6991 Weight: 1.00 // 1 50 ENSP00000363529/1-747 MFGGPGPGVL GAQGMAGPLR GRVEELKLPW WRESSPLVLR HSEAARLAAD ENSBTAP00000008235/1-747 RVRRPGAWGP GAQSMAGPLR SRVDELKRPW WRESSPLVLQ HSEAARLAAD ENSTTRP00000016130/1-684 ---------- ---------- ---------- ---------- ---------- bmy_00583T0/1-710 ---------- ----MAGPLR GRVEELKRPR WRESSPRVLQ HSEAARLAAD BACU015535/1-734 ---------- ----MAGPLR GRVEELKQPR WRESSPRVLQ HSEAARLAAD 51 100 ENSP00000363529/1-747 ALLERGEAAY LRVISEEREL PFLSALDVDY MTSHVRGGPE LSEAQGQEAS ENSBTAP00000008235/1-747 ALLERGEDAY LRVISEEREL PFLSALDMEY MTSHARGGPE LGEAQGPEAL ENSTTRP00000016130/1-684 ---------- ---LSEEREL PFLSPLDVDY MTSHARGGSE LGEAVGPGAA bmy_00583T0/1-710 ALLERGEAAY LRVISAERDL PFLSPLDVDY MTSHARGGSE LGEAQGPEAA BACU015535/1-734 ALLERGEVAY LRVISAEREL PFLSPLDVDY MTSHARRGSE LGEAQGPEAA 101 150 ENSP00000363529/1-747 GPDRLSLLSE VTSGTYFPMA SDIDPPDLDL GWPEVPQATG FSPTQAVVHF ENSBTAP00000008235/1-747 GPDRLSLHSE VTSGTYFPLA SDIDPPDLDL GWPEVPHATG FSPTQAVVHF ENSTTRP00000016130/1-684 GPDPLSLLSE VTSGTYFPLA SDVDPPDLDL GWPEVPRATG FRPTQAVIHF bmy_00583T0/1-710 GPDRLSLLSE VTSGTYFPLA SDIDPPDLDL GWPEVPRAAG FRPTQAV--- BACU015535/1-734 GPDRLSLLSE VTSGTYFPLA SDIDPPDLDL GWPEVPRAAG FRPTQAVVHF 151 200 ENSP00000363529/1-747 QRDKAKNIKD LLRFLFSQAH TVVAVVMDIF TDMELLCDLM EASSRRGVPV ENSBTAP00000008235/1-747 QRDKAKSIKD LLRFLFSQAR TVVAVVMDIF TDMELLCDLM EASGRRGIPV ENSTTRP00000016130/1-684 QRNKAKSIKN LLHFLFSQAR TVVAVVMDIF TDMELLCDLM EASGWRGVPV bmy_00583T0/1-710 ---------- ---------- -VVAVVMDIF TDMELLCDLM EASCWRGVPV BACU015535/1-734 QRDKAKSIKD LLHFLFSQAR TVVAVVMDIF TDMELLCDLM EASCWRGVPV 201 250 ENSP00000363529/1-747 YLLLAQEHLR HFLEMCYKMD LNGEHLPNMR VRSTCGDTYC SKAGRRFTGQ ENSBTAP00000008235/1-747 YLLLAQQHLR HFLEMCYKMD LNGGHLPNMR VRSTCGDTYC SKAGRRFTGQ ENSTTRP00000016130/1-684 YLLLAEEHLR HFLEMCYKMD LNGGHLRNMR VRSTCGNTYC SKAGRRFTGQ bmy_00583T0/1-710 YLLLAEEHLR HFLEMCYKMD LNGGHLQNMR VRSTCGDTYC SKAGRRFTGQ BACU015535/1-734 YLLLAEEHLR HFLEMCYKMD LNGGHLQNMR VRSTCGDTYC SKAGRRFTGQ 251 300 ENSP00000363529/1-747 ALEKFVLIDC EQVVAGSYSF TWLCSQAHTS MVLQLRGRIV EDFDREFRCL ENSBTAP00000008235/1-747 ALEKFVIIDC EQVVAGSYSF TWLCSQAHTS MVLQLRGRIV EDFDREFRCL ENSTTRP00000016130/1-684 ALEKFAIIDG EQVVAGSYSF TWLCSQAHTS MVLQLRGRIV EDFDREFRCL bmy_00583T0/1-710 ALEKFAIIDC EQVVAGSYSF TWLCSQAHTS MVLQLRGRIV EDFDREFRCL BACU015535/1-734 ALEKFAIIDC EQVVAGSYSF TWLCGQAHTS MVLQLRGRIV EDFDREFRCL 301 350 ENSP00000363529/1-747 YAESQPVEGF CGGEDPLSPR ALRPPPVALA FRPDVPSPTS SLPSSTSLSS ENSBTAP00000008235/1-747 YAESRPVEGF CGGEDPPSPR APCPPPVALA FGPGVPSTTS SSPSSTSLSS ENSTTRP00000016130/1-684 YAESRPVEGF CGGEDPLSPR VPCPPPVARS FGPSIPSTTS LSCSSTSLSS bmy_00583T0/1-710 YAESRPVEGF CGGEDPLSPR APCPPPVALA FRPGIPSTTS SSRSSTSLSS BACU015535/1-734 YAESRPVKGF CGCEDPLSPR APCPPPVALA FRPGIPSTTC SSRSSTSLSS 351 400 ENSP00000363529/1-747 IKQSPLMGRS SYLALPGGGD CSDTGVVSSS LGPARREASG QPSLHRQLSD ENSBTAP00000008235/1-747 IKRSPRMGH- SYLALPGGGD RTDMGVGSSS PGPTRCEADG QPSLQRQLSD ENSTTRP00000016130/1-684 IKCSPRMGHS SYPAQPRGGG CSDMAMGSSS PGPARCEADG QPSLQCQLSD bmy_00583T0/1-710 IKCSPHMGHS SYPALPRGGG CSDMGMGSSS PGPARCEADG QPSLQCQLSD BACU015535/1-734 IKCSPRRGHS SYPALPRGGG FSDTGMGSSS PGPARCEADG QPSLQCQLSD 401 450 ENSP00000363529/1-747 PNHGSPPGLY RANLGKLGAY PWSQSSPALN HNSTSPLTLA VGSPLLPRSR ENSBTAP00000008235/1-747 PNHGPLLGPY RANLSKLGAS PWCQSSPALN HNSTSPVTLG GGSPLLACSR ENSTTRP00000016130/1-684 PNHGPLLGPY RANLSKLGAS PWSQSSPALN PNSTSPVTLG GGSPLLAHPR bmy_00583T0/1-710 PNHGPLLGPY WAKLSKLGAS PWSQFSPALN HNSSSPVTLA GESPLLARPR BACU015535/1-734 PNHGPLLGPY RANLSKLGAS PLSQSSPALD HNSSSPVTQA GESPLLARPR 451 500 ENSP00000363529/1-747 PLLQFHRGAP ALSRFPENGL PGSQEPSPLR GRWVPGTTLE TVEEKEKKAS ENSBTAP00000008235/1-747 PLLPFPWSVS ALPRLPENGV PGSQEPRRSR GRWVPSTALE TLE--ENKAS ENSTTRP00000016130/1-684 PLLSF-RGVS ALSRLPENGV TGSQEPSPPR GRWVPGTALE AVE--ENKVS bmy_00583T0/1-710 PLLSFPRCVS ALSRLPENGV TGSQEPSPPR GRWVPGTALE AAE--ENKVS BACU015535/1-734 PLLSFPRCVS ALSRLPENGV TGSQEPSPPR GRWVPGTALE AAE--ENKVS 501 550 ENSP00000363529/1-747 PSQSRGQLDL LVPFPRAREV GDPDSGVTPN SGPLRPGEQA PEDRRLSPSQ ENSBTAP00000008235/1-747 LSQSHGQLDL LVPFSRAREA GGPDLGVARN SGSLWPGEQA SEDRRLAPNQ ENSTTRP00000016130/1-684 LSQSHGQLDL LVPFPRAREA GGPDSGVTPI SGSLWPSEQA PEDRRLASNQ bmy_00583T0/1-710 LSQSHGQLDL LVPFPRAREA GGPDSGVTPN SGSLWPSEQA PEDRRLASNQ BACU015535/1-734 LSQSHGQLDL LVPFPRAREA GGPDSGVTPN SGSLWPSEQA PEDRSLASNQ 551 600 ENSP00000363529/1-747 ADSQLDLLSR ALGTGGAPEL GSLRPGDRAL EDRRLSLNQS RGQSDLLMQY ENSBTAP00000008235/1-747 RYNQLDFLPQ AQGARGAPES GSPKVGSWTP EDKRLSANHS HGQLDLLVQF ENSTTRP00000016130/1-684 RYNQLDLLPQ AQDARGPPES GSPRPGNRTP EDKRLSPNHS HGQLDLQVQS bmy_00583T0/1-710 RYNQLDLLPQ AQGARGPPES GSPRPGNRTP EDKRLSPDHS HGQMDLQVQS BACU015535/1-734 RYNQLDLLPQ AQGARGPPES RSPRPGNRTP EDKRLSPDHS HGQMDLQVQS 601 650 ENSP00000363529/1-747 PKAQGSRVPL ETNSSARPAR RAPDERRQTL GHSQLDLITK FGPFRGEGPG ENSBTAP00000008235/1-747 PQPGGSRVPL EANSPARAGK QRPDERRQTL GHSQLDLITK FGPLRGEGPE ENSTTRP00000016130/1-684 PKAGGSRVPP EANSLARPGK QGKEEQRQTL GHSQLDLIMK FGPFRGEGPG bmy_00583T0/1-710 PKAGGSRVPL EANSLARPGK QGPDEQRQTL GHSQLDLIMK FGPFRGEGPG BACU015535/1-734 PKAGGSRVPP EANSLARPGK QGPDEQRQNL GHSQLDLIMK FGPFRGEGPG 651 700 ENSP00000363529/1-747 PNGLPISSPA RTAGAGSGDE KRLTLGHSKL DLITKYHQLH GARQGTEP-- ENSBTAP00000008235/1-747 PSELPRPSPA QKAGVDLGEE KRRTLGHSQL DLITKYHQLQ GARQGPEPSL ENSTTRP00000016130/1-684 SNDLPRPSPG RKPGVDSGDE KRLTLGHSQL DLITKYHQLQ GTRQGPEPGL bmy_00583T0/1-710 SNDLPRPSPA RKPGVDSGDE KWLTLGHSQL DLIIKYHQLQ GIRQGPEPGL BACU015535/1-734 SSDLPRPSPA RKPGVDSGDE KWLTLGHSQL DLITKYHQLQ GTRQGPEPGL 701 750 ENSP00000363529/1-747 -GGPKGGHLN GGNSDLVRDE KRLTLGHSKL DLITKYNKSK FKQLRSRFES ENSBTAP00000008235/1-747 SGGPAGGQRN GNSNGLSEDE KRRTLGHSKL DLITKYNKSK FKLLRSRFET ENSTTRP00000016130/1-684 PRGPTGGQRN GSSSGLSGDE KWLTLGHSKL DLIIQYNKSK SKLLQSRFQL bmy_00583T0/1-710 PGGPTGGQRK GSSNGLSGDE KRLTLGHSKL DLITQYNKSK SKLLQSRFEL BACU015535/1-734 PGGPTGGQRK GSSNGLSGDE KRLTLGHSKL DLITQYNKSK SKLLRSRFEL