KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:34:46 2014 Check: 00 .. Name: ENSP00000356560/1-1190 Len: 1277 Check: 4078 Weight: 1.00 Name: ENSTTRP00000010227/1-1172 Len: 1277 Check: 8075 Weight: 1.00 Name: ENSBTAP00000008215/1-1173 Len: 1277 Check: 3711 Weight: 1.00 Name: bmy_14075T0/1-862 Len: 1277 Check: 2950 Weight: 1.00 Name: BACU012835/1-1081 Len: 1277 Check: 3308 Weight: 1.00 // 1 50 ENSP00000356560/1-1190 MEGTEAAAAK PAGGSPQGPK TGSGTASPVE GTSAVEWSGP EPQLDNGHPP ENSTTRP00000010227/1-1172 MEGMEVAA-R PAGGSLQGPK IGSGTASSME VTSAVERSGP EPQPENGHFP ENSBTAP00000008215/1-1173 MEGMEAAA-R PAGGSLQEPQ IGSRTASSMQ VTSAVERSDP EPQPENGHLP bmy_14075T0/1-862 ---------- ---------- ---------- ---------- ---------- BACU012835/1-1081 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000356560/1-1190 RPWPCPQENR TSSLMAPQPP RVWGVQLQGP SVLESKVRAL KEKMTVAKQG ENSTTRP00000010227/1-1172 RHWPCPREDR TPSLMAPQPP GAQGIQVQGP SVLESKVRAL KEKMTAGKQG ENSBTAP00000008215/1-1173 RPWPCPREDG TPSPKATQPP GAPGIQLQGP SVLESKVRAL KERMTAGRQG bmy_14075T0/1-862 ---------- ---------- ---------- ---------- ---------- BACU012835/1-1081 ---------- ---------- ---------- ---------- ---MTAGKQG 101 150 ENSP00000356560/1-1190 VSPCSASQEW SSPKKPQCRR GKAGRAGTPS EGSFLPGAVV APRTQNLPDG ENSTTRP00000010227/1-1172 ASPCLTSHER PSLKKPKCRR VKVGGTRTPS EGSSLPDAVV VHHAQNPNDG ENSBTAP00000008215/1-1173 AGPSLTSHQR LALKKPKCRR VKVGGSKPPS EGPSPPEAVV VHHTQKPNDR bmy_14075T0/1-862 ---------- ---------- ---------- ---------- ---------- BACU012835/1-1081 ASPCLTSHER PSLKKSKCRR VKVGGTRASS EGSSLPDAVV VHHAQNPNDG 151 200 ENSP00000356560/1-1190 QLDGSINEEQ PARDGGPRLP RPPAPGREYC NRGSPWPPEA EWTLPDHDRG ENSTTRP00000010227/1-1172 LLDSSVTEEE SARNGAPGPP RSPASGLQSW NRRSPWPPEA VRTLPDHDRA ENSBTAP00000008215/1-1173 RLDRSVTEEE PARNGDPGPP RLPAPGLECW NRRSPWPPEA VQTQPEHDRA bmy_14075T0/1-862 ---------- ---------- ---------- ---------- ---------- BACU012835/1-1081 LLDSSITEEE SARNGAPGPP GSPASGLQSW NRRSPWPPEA VRTLPDHDRA 201 250 ENSP00000356560/1-1190 PLLGPSSLQQ SPIHGVTPGR PGGPGHCNKI IHIPSPRTGR SYPFPDGVVT ENSTTRP00000010227/1-1172 VPPGPSSLQE SSMHRVTPSQ PEGSGPCNKT THRPSLRKGR SYPLQDGLIT ENSBTAP00000008215/1-1173 LPAGPSSLQE GPVHRVTPSR PGGSRPCNKT THVLTLRKGR SHPQQDGLGT bmy_14075T0/1-862 ---------- ---------- ---------- ---------- ---------- BACU012835/1-1081 LPPGPSSLQE SPMHRVTPSQ PEGSGPCNKT THRTSLRKGR SYPLQDGLVS 251 300 ENSP00000356560/1-1190 EADLDSTSLT SEEVFVPRTA LLGERWRAGD LEALGAGSSV LSLSDRVERN ENSTTRP00000010227/1-1172 QEDLDSLSLT SEEDFVPRPA LLGELWRAGD LGTLGTGGST LSLSDRVERN ENSBTAP00000008215/1-1173 RGDPDSLSPT SEENFVPRPA LLGELWRTRD LGALGTGGST LSLSDRVERN bmy_14075T0/1-862 ---------- ---------- ---------- ---------- ---------- BACU012835/1-1081 QEDLDSLSLT SEEDFVPRPA LLGELWRAGD LGALGTGGST LSLSDRVERN 301 350 ENSP00000356560/1-1190 RLLLQEMLNV SGQSPRKVGT PAWTPSWDTA APERPVGDVD WASGTSLQDS ENSTTRP00000010227/1-1172 RLLLQEMLSV GGQGPSKV-X XXXXXXXXXX XXXRLAGDVD WESGISLHDA ENSBTAP00000008215/1-1173 RLLLQEMLSV GGQGPSKVGV PGWTSCWDRA VPERLAGDVD WDSGISLQDS bmy_14075T0/1-862 ---------- ---------- ---------- ---------- ---------- BACU012835/1-1081 RLLLQEMLSV GGQGPSKVGS PAWTSSRDRA VPARPAGDVD WDSGISLQDA 351 400 ENSP00000356560/1-1190 GQNRTVGPNP EPVLSPRHEE ATHLLQRARM KARTRPLRAS HDIVPTITQG ENSTTRP00000010227/1-1172 DQSRSFSPKP EPVLSPRHEE AKHLLQRARM KARTRPVRAS HDIVPTLAQG ENSBTAP00000008215/1-1173 DQSRPFGPKP QPVLSPRHEE AKHLLQRARM KARTRPVRAS HDIVPTLALC bmy_14075T0/1-862 ---------- ---------- ---------M KARTRPVRAS HDIVPTLAQG BACU012835/1-1081 DQSRTFSLKP EPVLSPRHEE AKHLLQRARM KARTRPVRAS HDIVPTLAQG 401 450 ENSP00000356560/1-1190 SRDGHRSPAR DPRTTPACRD SLQNGHTSDS SSGESSGGHR PRRGPSPSHV ENSTTRP00000010227/1-1172 SRDGWKSPAL DPRMTLACRD NLQNGNTSDS SSGESSSGQW PKRAASPSHV ENSBTAP00000008215/1-1173 SRDGRKSPAL DPRMTIACRD NLQNGNTSDS SSGESSSGQW PKRGTSPSHV bmy_14075T0/1-862 SRDGRKSPAL DPRMTLACRD NLQNGNTSDS SSGESSSGQW PKRAASPSHV BACU012835/1-1081 SRDGWKSPAS DPRMTLACRD NLQNGNTSDS SSGESSSGQW PKRAASPSHV 451 500 ENSP00000356560/1-1190 RFEDESAREA EFRHLERLQQ RQRQVLSTVL QAADQGPLRS KPDLADYING ENSTTRP00000010227/1-1172 RFEDESARDA ESRYLERLQQ RQRQVLSTTL QPADQGPLRS KPDLADYVHG ENSBTAP00000008215/1-1173 RFEDESARDA ESRYLERLQQ RQRQVLSL-- --ADQGPLRS KPDLADYIQG bmy_14075T0/1-862 RFEDESARDA ESRYLERLQQ RQRQVLSTAL QPADQGPLRS KPDLADYVHG BACU012835/1-1081 RFEDESARDA ESRYLERLQQ RQRQVLSTAL QPADQGPLRS KPDLADY--- 501 550 ENSP00000356560/1-1190 APRLRDAGQG TFHRLVGSLD RRGHPA-PPA PGSERRCQAC GSCIDDPRPA ENSTTRP00000010227/1-1172 GCRRQDAGAG SLHPLLGGLE PRGLPAPPPA QGSERRCRAC GHSI------ ENSBTAP00000008215/1-1173 GCRRRDAGAG ALHPLLGGLQ PGGLSAPPPA RGSERRCRAC GHCI------ bmy_14075T0/1-862 GCRRQDAGAG ALHPLLGGLE PRGLPTPPPA QGSERRCRAC GHCI------ BACU012835/1-1081 ---------- ---------- ---------- -GRERRCRAC GHCI------ 551 600 ENSP00000356560/1-1190 QGKAPPVPRT LQELQAACGM ERVLG----- -GLSSPLRLL P-AEPRLHME ENSTTRP00000010227/1-1172 ----APDPRV LREREAACGV EGALG----- -GLGGPLRLF P-AEPRLHTE ENSBTAP00000008215/1-1173 ----APDPRG LREREPACGR EGASAQPLSS QGLSVPLRLL SAAEPRLHTE bmy_14075T0/1-862 ----APDPRV LREREAACGM EGLLAQPRSP RGLGGPLRLF P-AEPGLHTE BACU012835/1-1081 ----APDPRV LRECEAACGM EGVLAQPRSP RGLGGPLRLF P-AEPGLHTE 601 650 ENSP00000356560/1-1190 WIRETHIGDT VCPAEVDSAL DSTDNSDNCR TDSEEAGTSQ AGWACGRTQG ENSTTRP00000010227/1-1172 WIRETHIGGQ ARPEEVDSAL DSTDTSDSCR TDSEEAGTSQ P----SRVRG ENSBTAP00000008215/1-1173 WIRETHIGEQ ALPEEADSAL DSTDTSDSCR TDSEEAGTSQ P----SKT-- bmy_14075T0/1-862 WIRETHIGGQ ARPEEVDSAL DSTDTSDSCR TDSEEAGTSQ P----SRVRG BACU012835/1-1081 WIRETHIGGQ ARPEEVDSAL DSTDTSDSCR TDSEEAGTSQ P----SRVRG 651 700 ENSP00000356560/1-1190 SSPRLRLRGS RPR-GHRWSK KAEAELPWGL QAQQHLPRAD DVEVENEVKE ENSTTRP00000010227/1-1172 SSP--RLRAS RPRGGHRWFQ KAEMGPLRSP QAPHYLP-AG AVEVLDEVTE ENSBTAP00000008215/1-1173 -----RLRAS RPRGGHRWLH KAEMEPPQSP QASHDLPGLE LLEVSDEVTE bmy_14075T0/1-862 SSP--RLRAS RPRGGHRWFR KSEMGPLRSP QAPPYLPGLE LVEVLDEVTE BACU012835/1-1081 SSP--RLRAS RPRGGHRWFQ KAEMGPLRSP QAPPYLPGLE LVEVLGEVTE 701 750 ENSP00000356560/1-1190 GRGHTPEGTL FLREDA--KP PDLELKRVSL GPQWQPGPGL GSH-----QP ENSTTRP00000010227/1-1172 G-GQTXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000008215/1-1173 DAGQTTAGAL LPREDALSKP PVQDLKRAFP GSPWQSGPGL ENH-----WA bmy_14075T0/1-862 GTGQTPEGTL LPREDAFSKP LVQDSNRASL GS--QPGPGP ENH-----WA BACU012835/1-1081 GTGQTPEGTL LPREDAFSKL LVQDSNRASL GS--QPGPGP ENH-----WA 751 800 ENSP00000356560/1-1190 HPLDSRTPCR TAYATTAPMT PESSGPGGQA QVTESHESLE IVSPSSLQQS ENSTTRP00000010227/1-1172 XXXXX----X XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXX---XXX ENSBTAP00000008215/1-1173 HPGDF----R TAYTIASPMK LGSSGPGRQG PVIESQESLG TDCP---QQS bmy_14075T0/1-862 QPVDS----W TAYAIASSMK VGSSGPGRQA QVVERQESPG TDSP---NQS BACU012835/1-1081 QPVDS----R TAYAIASSMK VGSSAPGRQA QVVESQESLG TDSQ---NQS 801 850 ENSP00000356560/1-1190 HAEPSAPHQA WQPTASLCPE GWAPTPPPSR KTTSPVSHRK AALAGLLRLG ENSTTRP00000010227/1-1172 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000008215/1-1173 RAEPSAHHQA RQPTASLCPD GWVPTPPSSK KTTSPVSHRK AALAGLRRLG bmy_14075T0/1-862 HAEPSAPHQA QQPTASLSPE GWVPTPPSSK KTTSPVSHRK AALAGLRRPG BACU012835/1-1081 HAEPSAPHQA QQPTASLSPQ SWVPTPPSSK KTTSPVPHRK AALAGLRRPG 851 900 ENSP00000356560/1-1190 DQTEPVGIPR PPSRSAVLRT CELPPSQTQP SRPQVRHPLL ALSTNNCNNS ENSTTRP00000010227/1-1172 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000008215/1-1173 NQREPMDSPL PASRSAVPRT CELTSTQPPP HSPHSRHPLR ALSTNNCNSS bmy_14075T0/1-862 DQGEPMDAPV PSSRSVVPRA CELTRPQPQP -----RSPCV TPPTGHCNNG BACU012835/1-1081 DQGEPMDAPV PSSRSVVPRA CELTRLQPQP -----RSPCV TLSTGHCNNG 901 950 ENSP00000356560/1-1190 APRGLQEPYG GAVHEGRVER GPCSREPEPP LENSRDGGPQ GFLGSADVAT ENSTTRP00000010227/1-1172 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXGLQ GCLASAAVGT ENSBTAP00000008215/1-1173 MPQGLQEPWE GAILMG--ET GARSQDPTAP LEDRRDGGLQ GCLASAAVGT bmy_14075T0/1-862 TPQGLQEPWG GAIFVGSGEK GAYSQKPAAP PEDHRDGGLQ GCLASAAVGT BACU012835/1-1081 TPQGLQEPWG GAIFAGSGEK GAYSQKPAAP PEDHRDGGLQ GCLASAAVGT 951 1000 ENSP00000356560/1-1190 INSTGITLSL SSEESESSKE SEGSLQRTGS GSGGHVLSRA SAGAGTGPGS ENSTTRP00000010227/1-1172 ISSMGITFSP ASEETESGQE PEGGLQRTEP SSVGHVSSRA LPGVSVGPSL ENSBTAP00000008215/1-1173 ISSVGITFSP ASEEPKSSQE AEGGLQRTEP SSVGHVSSRA LSGVNAGPSP bmy_14075T0/1-862 ISSMGITFSP ASEEPESSQE PEGGLQRTEP SSVGHVSSRA LPGVSVGPSL BACU012835/1-1081 ISSMGITFSP ASEEPASSQE PEGSLQRTEP SSVGHVSSRA LPGVSVGPSL 1001 1050 ENSP00000356560/1-1190 PSAAPLDQNK KRSSSIASTL GLKKLFSAL- GQSSRPKLGK SRSYSVEQLQ ENSTTRP00000010227/1-1172 PSAAPSDKNK KSSGSISSTL GLKKFFLALT SQGTRPKLGK SRSYSVEQLQ ENSBTAP00000008215/1-1173 PSTTASDKNK KSSGGIASAL GLKKFFSTL- SQGTRPKMGK SRSYSVEQLQ bmy_14075T0/1-862 PSAAPSDKNK KSSGSISSTL GLKKFFLALT SQGTRPKLGK SRSYSVEQLQ BACU012835/1-1081 PSAAPSDKNK KSSGSTSSTL GLKKFFLALT SQGTRPKLGK SRSYSVEQLQ 1051 1100 ENSP00000356560/1-1190 PAPPGLTSQS ------RAPS LQSLHPVSPS HQRRKAASFQ NLHSLLSSKG ENSTTRP00000010227/1-1172 PPAPSPASHT ------RAPS LQSLHPVSPS RQRWKAASFQ NLHSLLSGKV ENSBTAP00000008215/1-1173 PPAPGPASHT GTPKVKRAPS LQSLHLVSPS RQHRKATSFQ NLHSLLSGKV bmy_14075T0/1-862 PPAPSPASHT STPKMKRAPS LQSLHPVSPS RQRRKAASFQ NLHSLLSGKV BACU012835/1-1081 PPAPSPASHT SAPKMKRAPS LQSLHPVSPS RQRRKAASFQ NLHSLLSGKV 1101 1150 ENSP00000356560/1-1190 NRSSLYLVAG PGDHSAAGRP AKTSPRRALS VEDVGAPSLA RTVGRLVEVF ENSTTRP00000010227/1-1172 DRSNLYLVGE PGHHNAADRP AKAPPRPSLS VEDVSAPGLA RAVGRMVEVF ENSBTAP00000008215/1-1173 DRSTLYLVGE PGDHSAADRL GKAPARRALS VEDVSAPGPA RAVGRLVEVF bmy_14075T0/1-862 DRSNLYLVGE PGDHNAADRP AKAPPRRSLS VEDVSAPGLA RAVGRMVEVF BACU012835/1-1081 DRSNLYLVGE PGDHNAADRP AKAPPRRSLS VEDVSAPGLA RAVGRMVEVF 1151 1200 ENSP00000356560/1-1190 PDGTSQLQLQ RSPGGTFGFC VASGNGRPDS GMPSPL---- ---------- ENSTTRP00000010227/1-1172 PDGTSQLQLQ RSPEGTFGFC VASGNGRRDS GRPAPP---- ---------- ENSBTAP00000008215/1-1173 PDGTSQLQLQ RPPEGTFGFN VASGNGRRDS GRPPPP---- ---------- bmy_14075T0/1-862 PDGTSQLQLQ RSPEGTFGFC VASGNGRXXX XXTPTPHLPF LAPQPWGLGK BACU012835/1-1081 PDGTSQLQLQ RSPEGTFGFC VASGNGRRDS G--------- ---------- 1201 1250 ENSP00000356560/1-1190 ---------- ---------- ---------- ---------- --PQPHGWGG ENSTTRP00000010227/1-1172 ---------- ---------- ---------- ---------- --PRLHSPGL ENSBTAP00000008215/1-1173 ---------- ---------- ---------- ---------- -CSGSTAPGA bmy_14075T0/1-862 PLQCLLAVVV SLSWFYVQEM ADESTAKLYS GLLGVGDEIL EVNGAKVAGL BACU012835/1-1081 ---------- ----FYVQEM ADESTAKLYS GLLGVGDEIL EVNGAKVAGL 1251 1300 ENSP00000356560/1-1190 LSKQGRAFWL WSEAF----- ---LVFG ENSTTRP00000010227/1-1172 G-KHCSAFWL WSFSS----- ---PVFG ENSBTAP00000008215/1-1173 SAGRSSAFWP WPYLF----- ---SGFH bmy_14075T0/1-862 GLAHIRELLA HAESLSIRVL RQRPVPR BACU012835/1-1081 GLAHIRELLA HAESLSIRVL RQRPVPR