KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:11 2014 Check: 00 .. Name: ENSTTRP00000015452/1-996 Len: 1057 Check: 8227 Weight: 1.00 Name: ENSP00000338481/1-1005 Len: 1057 Check: 8958 Weight: 1.00 Name: ENSBTAP00000007823/1-1001 Len: 1057 Check: 8877 Weight: 1.00 Name: bmy_14368T0/1-743 Len: 1057 Check: 1391 Weight: 1.00 Name: BACU014297/1-1024 Len: 1057 Check: 7129 Weight: 1.00 // 1 50 ENSTTRP00000015452/1-996 MTTEVGSASE VKKQSDQLGA DATKEKLKEV AENQQNQSSD PEEEKGSQSP ENSP00000338481/1-1005 MTTEVGSVSE VKKDSSQLGT DATKEKPKEV AENQQNQSSD PEEEKGSQPP ENSBTAP00000007823/1-1001 MTTEVGSASE VKKESDQLGA DATKEKPKEV AENQQNQTSD PEEEKGSQSS bmy_14368T0/1-743 ---------- ---------- ---------- ---------- ---------- BACU014297/1-1024 MTTEVGSASE VKKESDQLGA DATKEKPKEV AENQQNQSSD PEEEKGSQSP 51 100 ENSTTRP00000015452/1-996 PPAESQSSPR RQKKEKDPSE SRGISRFIPP WLKKQKSYNL VVAKDGGDKK ENSP00000338481/1-1005 PAAESQSSLR RQKREKETSE SRGISRFIPP WLKKQKSYTL VVAKDGGDKK ENSBTAP00000007823/1-1001 PPAESQSSPR RQKKEKDPSE SRGISRFIPP WLKKQKSYTL VAAKDGGDKK bmy_14368T0/1-743 ---------- ---------- ----MDFLP- ---------- ---------- BACU014297/1-1024 PPAESQSSPR RQKKEKDPSE SRGISRFIPP WLKKQKSYNL VVAKDRGDKK 101 150 ENSTTRP00000015452/1-996 EPAQAAGEEQ ILDKEESLPE EERQAKGDAE ETAQRKQQEI KVDVKEEKPV ENSP00000338481/1-1005 EPTQAVVEEQ VLDKEEPLPE EQRQAKGDAE EMAQKK-QEI KVEVKEEKPS ENSBTAP00000007823/1-1001 EPAQPVVGEQ VLDKEESLPE EERRAKGDAE ETAQRKQQEI KVDVKEEKPL bmy_14368T0/1-743 ---------- ---------- ---------- ---------- ---------- BACU014297/1-1024 EPTQAVGEEQ ILDKEEPLPE EERQAKGDAE ETAQRKQQEI KVDVKEEKPL 151 200 ENSTTRP00000015452/1-996 VSSLETQXXX X-------XX IEREEEKVKE IQED-LSDEA AKRETKEVQT ENSP00000338481/1-1005 VSKEEKPSVS KVEMQPTELV SKEREEKVKE TQEDKLEGGA AKRETKEVQT ENSBTAP00000007823/1-1001 VSSQETQQLV E------EVS KEREEEKVKE IQEAEFMDEA AKRETKEVQT bmy_14368T0/1-743 ---------- --------VV QEEEEEK--- ---------- ---------- BACU014297/1-1024 PVEE------ --------VS KEREEEKVKE IQED-KSDEA ANRETKEVQT 201 250 ENSTTRP00000015452/1-996 NELKAEKASQ RATKKTRTVQ CKVTLLGGTE YSCDLEKRAK GQVLFDRVCE ENSP00000338481/1-1005 NELKAEKASQ KVTKKTKTVQ CKVTLLDGTE YSCDLEKHAK GQVLFDKVCE ENSBTAP00000007823/1-1001 NELRAEKASL KAPKKTKTVQ CKVTLLDGSE YSCDLEKRAK GQVLFDKVCE bmy_14368T0/1-743 ---------- ---------- ---------- ------KRAK GQVLFDRVCE BACU014297/1-1024 NELKAEKASQ KATKKTKTVQ CKVTLLDGTE YSCDLEKRAK GQVLFDRVCE 251 300 ENSTTRP00000015452/1-996 HLNLLEKDYF GLVFQENPEQ KNWLDPAKEM KRQLRNLPWL FSFNVKFYPP ENSP00000338481/1-1005 HLNLLEKDYF GLLFQESPEQ KNWLDPAKEI KRQLRNLPWL FTFNVKFYPP ENSBTAP00000007823/1-1001 HLNLLEKDYF GLVFQENPEQ KNWLDPAKEI KRQLRNLPWL FSFNVKFYPP bmy_14368T0/1-743 HLNLLEKDYF GLVFQENPEQ KNWLDPAKEI KRQLRNLPWL FSFNVKFYPP BACU014297/1-1024 HLNLLEKDYF GLVFQENPEQ KNWLDPAKEI KRQLRNLPWL FSFNVKFYPP 301 350 ENSTTRP00000015452/1-996 DPSQLTEDIT RYFLCLQLRE DIASGRLPCS FVTHALLGSY TLQAELGDYD ENSP00000338481/1-1005 DPSQLTEDIT RYFLCLQLRQ DIASGRLPCS FVTHALLGSY TLQAELGDYD ENSBTAP00000007823/1-1001 DPSQLTEDIT RYFLCLQLRQ DIASGRLPCS FVTHALLGSY TLQAELGDYD bmy_14368T0/1-743 DPSQLTEDIT RYFLCLQLRE DIASGRLPCS FVTHALLGSY TLQAELGDCD BACU014297/1-1024 DPSQLTEDIT RYFLCLQLRE DVASGRLPCS FVTHALLGSY TLQAELGDCD 351 400 ENSTTRP00000015452/1-996 PEEHGSHDLS DFQFAPTQTK ELEEKVAELH KTHRGLSPAQ ADSQFLENAK ENSP00000338481/1-1005 PEEHGSIDLS EFQFAPTQTK ELEEKVAELH KTHRGLSPAQ ADSQFLENAK ENSBTAP00000007823/1-1001 PEEHASHDLS DFQFAPTQTK ELEEKVAELH KTHRGLSPAQ ADSQFLENAK bmy_14368T0/1-743 PEEHGSHDLS DFQFAPTQTK ELEEKVAELH KTHRGLSPAQ ADSQFLENAK BACU014297/1-1024 PEEHGSHDLS DFQFAPTQTK ELEEKVAELH KTHRGLSPAQ ADSQFLENAK 401 450 ENSTTRP00000015452/1-996 RLSMYGVDLH HAK------- ------DSEG VDIKLGVCAN GLLIYKDRLR ENSP00000338481/1-1005 RLSMYGVDLH HAK------- ------DSEG VDIKLGVCAN GLLIYKDRLR ENSBTAP00000007823/1-1001 RLSMYGVDLH HAK------- ------DSEG VDIKLGVCAN GLLIYKDRLR bmy_14368T0/1-743 RLSMYGVDLH HAKVLPNHGQ MAYAWQDSEG VDIKLGVCAN GLLIYKDRLR BACU014297/1-1024 RLSMYGVDLH HAK------- ------DSEG VDIKLGVCAN GLLIYKDRLR 451 500 ENSTTRP00000015452/1-996 INRFAWPKIL KISYKRSNFY IKVRPAELEQ FESTIGFKLP NHRAAKRLWK ENSP00000338481/1-1005 INRFAWPKIL KISYKRSNFY IKVRPAELEQ FESTIGFKLP NHRAAKRLWK ENSBTAP00000007823/1-1001 INRFAWPKIL KISYKRSNFY IKVRPAELEQ FESTIGFKLP NHRAAKRLWK bmy_14368T0/1-743 INRFAWPKIL KISYKRSNFY IKVRPAELEQ FESTIGFKLP NHRAAKRLWK BACU014297/1-1024 INRFAWPKIL KISYKRSNFY IKVRPAELEQ FESTIGFKLP NHRAAKRLWK 501 550 ENSTTRP00000015452/1-996 VCVEHHTFYR LVSPEQPPKA KFLTLGSKFR YSGRTQAQTR QASTLIDRPA ENSP00000338481/1-1005 VCVEHHTFYR LVSPEQPPKA KFLTLGSKFR YSGRTQAQTR QASTLIDRPA ENSBTAP00000007823/1-1001 VCVEHHTFYR LVSPEQPPKA KFLTLGSKFR YSGRTQAQTR QASSLIDRPA bmy_14368T0/1-743 VCVEHHTFYR LVSPEQPPKA KFLTLGSKFR YSGRTQAQTR QASTLIDRPA BACU014297/1-1024 VCVEHHTFYR LVSPEQPPKA KFLTLGSKFR YSGRTQAQTR QASTLIDRPA 551 600 ENSTTRP00000015452/1-996 PHFERTSSKR VSRSLDGALI GGVDRSLTKD FPGPAGEVSA RGPGAVSPAV ENSP00000338481/1-1005 PHFERTSSKR VSRSLDGAPI GVMDQSLMKD FPGAAGEISA YGPGLVSIAV ENSBTAP00000007823/1-1001 PHFERTSSKR VSRSLDGAPI DAVDQSLMKD FPGPAGEVSA PGPGVVSTAV bmy_14368T0/1-743 PHFERTSSKR VSRSLDGALI GIVDRSLTKD FPGPAGELSA RGPGAVSPAV BACU014297/1-1024 PHFERTSSKR VSRSLDGALI GIVDRSLTKD FPGPAGEVSA RGPGAVTPAV 601 650 ENSTTRP00000015452/1-996 VQDGDGSRDI RSPAKTPHVQ LTEGKKNSLR VEGDNIYVRH SNLMLEXXXX ENSP00000338481/1-1005 VQDGDGRREV RSPTKAPHLQ LIEGKKNSLR VEGDNIYVRH SNLMLEELDK ENSBTAP00000007823/1-1001 VQDGDGRRDL RSPAKVPHMP LIEGKKNSLR VEGDNIYVRH SNLMLEDLDK bmy_14368T0/1-743 VQDGDGSRDI RSPTKTPHVQ LTEGK----- ---------- ------DLDK BACU014297/1-1024 VQDGDGSRDI RSPAKTPHVQ LTEGKKNSLR VEGDNIYVRH SNLMLEDLDK 651 700 ENSTTRP00000015452/1-996 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX----- ENSP00000338481/1-1005 AQEDILKHQA SISELKRNFM ESTPEPRPNE WEKRRITPLS LQTQG----- ENSBTAP00000007823/1-1001 AQEEILKHQA SISELKRNFM ESTPEPRPNE WEKRRITPLS LQTQG----- bmy_14368T0/1-743 AQEEILKHQA SISELKRNFM ESTPEPRPNE WEKRRITPLS LQTQG----- BACU014297/1-1024 AQEEILKHQA SISELKRNFM ESTPEPRPNE WEKRRITPLS LQTQGSKGDH 701 750 ENSTTRP00000015452/1-996 ---------- ---------- ---------S SLETLNIVEE KKQAEVGKDE ENSP00000338481/1-1005 ---------- ---------- ---------S SHETLNIVEE KKRAEVGKDE ENSBTAP00000007823/1-1001 ---------- ---------- ---------S SLETLNVVEE KKQAEVGKDE bmy_14368T0/1-743 ---------- ---------- ---------S SLETLNIVEE KKQAEVGKDE BACU014297/1-1024 LFKDILSMTE KHQMAAAWTV EEKAQEADKS SLETLNIVEE KKQAEVGKDE 751 800 ENSTTRP00000015452/1-996 RVTPAEMNGK EPSPGHGPGE MRKVEPGTQK DPTPLSSE-- -SSSESEEEA ENSP00000338481/1-1005 RVITEEMNGK EISPGSGPGE IRKVEPVTQK DSTSLSSESS SSSSESEE-- ENSBTAP00000007823/1-1001 RVIPEEMNGK ELSPGRGPGE MRKVEPGTQK DSTSLSSESS SSSSESEEE- bmy_14368T0/1-743 RVTPAEMNGK EPSPGHGPGE MRKVEPGTQK DSTSLSSE-- -SSSESEEE- BACU014297/1-1024 RVTPAEMNGK EPSPGHGPGE MRKVEPGTQK DSTSLSSE-- -SSSESEEE- 801 850 ENSTTRP00000015452/1-996 EDVGEYRPHR RAPEGAIREE QGEYEEEVDE APGPAAKVVE RQDPVPAASA ENSP00000338481/1-1005 EDVGEYRPHH RVTEGTIREE Q-EYEEEVEE EPRPAAKVVE REEAVPEASP ENSBTAP00000007823/1-1001 EDVGEYRPHH RVTEGTIREE QEEDEEEVEE APGQAAKVVD REDPVPAASP bmy_14368T0/1-743 EDVGEYRPHH RVPEGTIREE QEECEEEVDQ APGQAAEVVE RQDPVPAASV BACU014297/1-1024 EDVGEYRPHH RVPEGTIREE QEECEEEVDQ APGQAAEVVE RQDPVPAASV 851 900 ENSTTRP00000015452/1-996 VTQAGASVGT VETVTQEKGA GPQIPAEKSV NEGAVKQDVS EEAE-DEQQK ENSP00000338481/1-1005 VTQAGASVIT VETVIQENVG AQKIPGEKSV HEGALKQDMG EEAE-EEPQK ENSBTAP00000007823/1-1001 VTHAGASVGP VETVPQEKVV APQIPAEKSV NEGAVKQDTG EETE-EEPQK bmy_14368T0/1-743 LTRAGASVGT VETVTQEKVA GPQIPAQKSV NEGAVKQDVG EDTE-DEQQK BACU014297/1-1024 LTRAGASVGT VETVTQEKVA GPQIPAPKSV NEGAVKQDVG EDTEDDEQQK 901 950 ENSTTRP00000015452/1-996 VNGDVAPVDI DVLPQIICCS EPPVVKTEMV TISDASQRTE ISTKEVPIVQ ENSP00000338481/1-1005 VNGEVSHVDI DVLPQIICCS EPPVVKTEMV TISDASQRTE ISTKEVPIVQ ENSBTAP00000007823/1-1001 VNGEVAHVDT DVLPQIICCS EPPVVKTEMV TISDASQRTE ISTKEVPIVQ bmy_14368T0/1-743 VNGEVAPVDI DVLPQIICCS EPPVVKTEMV TISDASQRTE ISTKEVPIVQ BACU014297/1-1024 VNGEVAPVDI DVLPQIICCS EPPVVKTEMV TISDASQRTE ISTKEVPIVQ 951 1000 ENSTTRP00000015452/1-996 TETKTITYES PQIDGGAGGD SGTLLTAQTV TSESVSTTTT THITKXXXXX ENSP00000338481/1-1005 TETKTITYES PQIDGGAGGD SGTLLTAQTI TSESVSTTTT THITKTVKGG ENSBTAP00000007823/1-1001 TETKTITYES PQIDGGAGGD SGTLLTAQTI TSESVSTTTT THITKTVKGG bmy_14368T0/1-743 TETKTITYES PQIDGGAGGD SGTLLTAQTV TSESVSTTTT THITKTVKGG BACU014297/1-1024 TETKTITYES PQIDGGAGGD SGTLLTAQTV TSESVSTTTT THITKTVKGG 1001 1050 ENSTTRP00000015452/1-996 XXXXXXXXXX XXXXXXXXXX XXALAQAIRE AREQHPDMSV TRVVVHKETE ENSP00000338481/1-1005 ISETRIEKRI VITGDGDIDH DQALAQAIRE AREQHPDMSV TRVVVHKETE ENSBTAP00000007823/1-1001 ISETRIEKRI VITGDADIDH DQALAQAIRE AREQHPDMSV TRVVVHKETE bmy_14368T0/1-743 ISETRIEKRI VITGDADIDH DQVKT----- ---------- ---------- BACU014297/1-1024 ISETRIEKRI VITGDADIDH DQALAQAIRE AREQHPDMSV TRVVVHKETE 1051 1100 ENSTTRP00000015452/1-996 L-DEGE- ENSP00000338481/1-1005 LAEEGED ENSBTAP00000007823/1-1001 L-EEGEE bmy_14368T0/1-743 ------- BACU014297/1-1024 L-DEGEE