KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:33:05 2014 Check: 00 .. Name: ENSP00000364839/1-1541 Len: 1546 Check: 6154 Weight: 1.00 Name: ENSBTAP00000007795/1-1535 Len: 1546 Check: 4470 Weight: 1.00 Name: ENSTTRP00000007531/1-1526 Len: 1546 Check: 9735 Weight: 1.00 Name: bmy_00533T0/1-1379 Len: 1546 Check: 1368 Weight: 1.00 Name: BACU015576/1-1515 Len: 1546 Check: 1869 Weight: 1.00 // 1 50 ENSP00000364839/1-1541 MKDKQKKKKE RTWAEAARLV LENYSDAPMT PKQILQVIEA EGLKEMRSGT ENSBTAP00000007795/1-1535 TKERNIRREE MIMRDVQLRV LENYSDAPMT PKQILQVIEA EGLKEMRIGT ENSTTRP00000007531/1-1526 ---------- ---------V LENYSDAPMT PKQILQVIEA EGLKEMRSGT bmy_00533T0/1-1379 ---------- ---------- ---------- ---------- ---------- BACU015576/1-1515 ---------- ---------- --------MT PKQILQVIEA EGLKEM-SGT 51 100 ENSP00000364839/1-1541 SPLACLNAML HSNSRGGEGL FYKLPGRISL FTLKKDALQW SRHPATVEGE ENSBTAP00000007795/1-1535 SPLACLNAML HSNSRGGEGL FYKLPGRISL FTLKKDALQW SRSPAVVEGE ENSTTRP00000007531/1-1526 SPLACLNAML HSNSRGGEGL FYKLPGRISL FTLKKDALQW SRSPAAVEGE bmy_00533T0/1-1379 ---------- ---------- ---------- ---------- ---------- BACU015576/1-1515 SPLACLNAML HSNSRGGEGL FYKLPGRISL FTLKKDALQW SRSPAAVEGE 101 150 ENSP00000364839/1-1541 EPEDTADVES CGSNEASTVS GENDVSLDET SSNASCSTES QSRPLSNPRD ENSBTAP00000007795/1-1535 EPEDTADVES CGSNEASTVS GENDVSLDET SSNASCSTES QSRPLSNPRD ENSTTRP00000007531/1-1526 EPEDTADVES CGSNEASTVS GENDVSLDET SSNASCSTES QSRPHSNPRD bmy_00533T0/1-1379 ---------- ---------- ---------- ---------- ---------- BACU015576/1-1515 EPEDTADVES CGSNEASTVS GENDVSLDET SSNASCSTES QSRPHSNPRD 151 200 ENSP00000364839/1-1541 SYRASSQANK QKKKTGVMLP RVVLTPLKVN GAHVESASGF SGCHADGESG ENSBTAP00000007795/1-1535 SCRASSQANK QKKKTGVMLP RVVLTPLKVN GAHVESASGF SGRHADGESG ENSTTRP00000007531/1-1526 SYRASSQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXF SGRHADGESG bmy_00533T0/1-1379 ---------- -------MLP RVVLTPLKVN GAHVESASGF SGRHADGESG BACU015576/1-1515 SYRASSQANK QKKKTGVMLP RVVLTPLKVN GAHVESASGF SGRHADGESG 201 250 ENSP00000364839/1-1541 SPSSSSSGSL ALGSAAIRGQ AEVTQDPAPL LRGFRKPATG QMKRNRGEEI ENSBTAP00000007795/1-1535 SPSSSSGGSP ALGSAAIRGQ AELARDPAPL LRGFRKPATG QMKRNRGEEI ENSTTRP00000007531/1-1526 SPSSSSSGSL ALGSAAIRGQ AEVARDPAPL LRGFRKPATG QMKRNRGEEI bmy_00533T0/1-1379 SPSSSSSGSL ALGNAAIRGQ AEVARDPAPL LRGFRKPATG QMKRNRGEEI BACU015576/1-1515 SPSSSSSGSL ALGSAAIRGQ AEVARDPAPL LRGFRKPATG QMKRNRGEEI 251 300 ENSP00000364839/1-1541 DFETPGSILV NTNLRALINS RTFHALPSHF QQQLLFLLPE VDRQVGTDGL ENSBTAP00000007795/1-1535 DFETPGSILV NTNLRALINS RTFHALPSHF QQQLLFLLPE VDRQVGTDGL ENSTTRP00000007531/1-1526 DFETPGSILV NTNLRALINS RTFHALPSHF QQQLLFLLPE VDRQVGTDGL bmy_00533T0/1-1379 DFETPGSILV NTNLRALINS RTFHALPSHF QQQLLFLLPE VDRQVGTDGL BACU015576/1-1515 DFETPGSILV NTNLRALINS RTFHALPSHF QQQLLFLLPE VDRQVGTDGL 301 350 ENSP00000364839/1-1541 LRLSSSALNN EFFTHAAQSW RERLADGEFT HEMQVRIRQE MEKEKKVEQW ENSBTAP00000007795/1-1535 LRLSSSALNN EFFTHAAQSW RERLADGEFT HEMQVRIRQE MEKEKKVEQW ENSTTRP00000007531/1-1526 LRLSSSALNN EFFTHAAQSW RERLADGEFT HEMQVRIRQE MEKEKKVEQW bmy_00533T0/1-1379 LRLSSSALNN EFFTHAAQSW RERLADGEFT HEMQVRIRQE MEKEKKVEQW BACU015576/1-1515 LRLSSSALNN EFFTHAAQSW RERLADGEFT HEMQVRIRQE MEKEKKVEQW 351 400 ENSP00000364839/1-1541 KEKFFEDYYG QKLGLTKEES LQQNVGQEEA EIKSGLCVPG ESVRIQRGPA ENSBTAP00000007795/1-1535 KEKFFEDYYG QKLGLTKEES LQQNVGQEEA EIKSNLRVS- ESTRPQRGPA ENSTTRP00000007531/1-1526 KEKFFEDYYG QKLGLSKEES LQQNVGQEEV EIKSDLRVSG ESTRPQRGPA bmy_00533T0/1-1379 KEKFFEDYYG QKLGLSKEES LQQNVGQEEV EIKSDLRVSG ESTRPQRGPA BACU015576/1-1515 KEKFFEDYYG QKLGLSKEES LQQNVGQEEV EIKSDLRVSG ESTRPQRGPA 401 450 ENSP00000364839/1-1541 TRQRDGHFKK RSRPDLRTRA RRNLYKKQES EQAGVAKDAK SVASDVPLYK ENSBTAP00000007795/1-1535 TRQRDGHFKK RSRPDLRTRA RRNLYKRQEP EQAEIAKDAQ SVTLDIPLHK ENSTTRP00000007531/1-1526 TRQRDGHFKK RSRPDLRTRA RRNLYKKQEP EQAEVAKDTQ SVAPDIPLYK bmy_00533T0/1-1379 TRQRDGHFKK RSRPDLRTRA RRNLYKKQEP EQAEVAKDTQ SVAPDIPLYK BACU015576/1-1515 TRQRDGHFKK RSRPDLRTRA RRNLYKKQEP EQAEVARDTE SVAPDIALYK 451 500 ENSP00000364839/1-1541 DGEAKTDPAG LSSPHLPGTS SAAPDLEGPE FPVESVASRI QAEPDNLARA ENSBTAP00000007795/1-1535 DGEAKTDAAG VGSPHPPGTS SAASNPESPE FPVETVASRL QPSPNDQARV ENSTTRP00000007531/1-1526 DGEAKTDAAG VGGPHLPGTS SAASNPESSE FPVETVASRI QPNPDDLARV bmy_00533T0/1-1379 DGEAKTDAAG VGGPHLPGTS STAPNPESSE FPVETVASRI QPDPDDLARV BACU015576/1-1515 DGEA--DAAG VGGPHLPGTS STAPNPESSE FPVATGASRI QPDPDDLARV 501 550 ENSP00000364839/1-1541 SASPDRIPSL PQETVDQEPK DQKRKSFEQA ASASFPEKKP RLEDRQSFRN ENSBTAP00000007795/1-1535 SASPDRIPSL LQETVDQEPK DQKRKSFEQA TSASFPEKKP RLEDRQSFRN ENSTTRP00000007531/1-1526 STSPDRIPSL PQETVDQEPK DQKRKSFEQA ASASFPEKKP RLEDRQSFRN bmy_00533T0/1-1379 STSPDRIPSL PQETVDQEPK DQKRKSFEQA ASASFPEKKP RLEDRQSFRN BACU015576/1-1515 STSPDRIPSL PQETVDQEPK DQKRKSFEQA ASASFPEKKP RLEDRQSFRN 551 600 ENSP00000364839/1-1541 TIESVHTEKP QPTKEEPKVP PIRIQLSRIK PPWVVKGQPT YQICPRIIPT ENSBTAP00000007795/1-1535 TIESVHPEKP QPTKEEPKVP PIRIQLSRIK PPWVVKGQPT YQICPRIVPI ENSTTRP00000007531/1-1526 TIESVHTEKP QPTKEEPKVP PIRIQLSRIK PPWVVKGQPT YQICPRIVPI bmy_00533T0/1-1379 TIESVHTEKP QPTKEEPKVP PIRIQLSRIK PPWVVKGQPT YQICPRIVPI BACU015576/1-1515 TIESVHTEKP QPTKEEPKVP PIRIQLSRIK PPWVVKGQPT YQICPRIVPI 601 650 ENSP00000364839/1-1541 TESSCRGWTG ARTLADIKAR ALQVRGARGH HCHREAATTA IGGGGGPGGG ENSBTAP00000007795/1-1535 TESSCRGWTG ARTLADIKAR ALQVRGARGH HCHREAATTA IGGGGGPGGG ENSTTRP00000007531/1-1526 TESSCRGWTG TRTLADIKAR ALQVRGARGH HCHREAATTA IGGGGGPGGG bmy_00533T0/1-1379 TESSCRGWTG TRTLADIKAR ALQVRGARGH HCHREAATTA IGGGGGPGGG BACU015576/1-1515 PESSCRGWTG TRTLADIKAR ALQVRGARGH HCHREAATTA IGGGGGPGGG 651 700 ENSP00000364839/1-1541 GGGATDEGGG RGSSSGDGGE ACGHPEPRGG PSTPGKCTSD LQRTQLLPPY ENSBTAP00000007795/1-1535 GGGATDEGGG RGGGSGDGGE ACGHPEPRGA PSAPGECASD LQRTQLLPPC ENSTTRP00000007531/1-1526 GGGATDEGGG RGIGSGDGGE ACGHPEPRGA PGTPGECASD LQRTQLLPPC bmy_00533T0/1-1379 GGGATDEGGG RGIGSGDGGE ACGHPEPRGA PGTPGECASD LQRTQLLPPC BACU015576/1-1515 GGGATDEGGG RGIGSGDGGE ACGHPEPRGA PGTPGECASD LQRTQLLPPC 701 750 ENSP00000364839/1-1541 PLNGEHTQAG TAMSRARRED LPSLRKEESC LLQRATVGLT DGLGDASQLP ENSBTAP00000007795/1-1535 PLNGDHAQAE TAASRARRED LASLRKGQSC PLQRVPDGPS GGLEDASRLP ENSTTRP00000007531/1-1526 PLNGEHVHPG SAVSRAKRED LASPRKEKSY PRQRVPDGLR SGLEDASRLP bmy_00533T0/1-1379 PLNGEHVHPG TAVSRARRED LASLRKEKSY PQQRVPDGLR SGLEDASRLP BACU015576/1-1515 PLNGEHVHPG TAVSRARRED LASLRKEKSY PRQRVPDGLR SGLEDASRLP 751 800 ENSP00000364839/1-1541 VAPTGDQPCQ ALPLLSSQTS VAERLVEQPQ LHPDVRTECE SGTTSWESDD ENSBTAP00000007795/1-1535 VASTRDPPCQ ALPPLPSRIP EPERLVEQLV SHPEGRTECG SGTTAWERGD ENSTTRP00000007531/1-1526 IAPTGDQPRQ ALLPLPSKTP APERLVEQPA LHLGGRTECG SGTTSWERGN bmy_00533T0/1-1379 IAPTGDQPCP ALPPLPSKTP APERLVEQPA LHLGGRTECG SGTTSWERGN BACU015576/1-1515 IAPTGDQPCP ALPPLPSKTP APERLVEQPA LHLGGRTECG SGTTSWETGN 801 850 ENSP00000364839/1-1541 EEQGPTVPAD NGPILSLVGD DTLEKGTGQA LD--SHPTMK DPVNVTPSST ENSBTAP00000007795/1-1535 EKLAPTIPSE NSPVRALAGP TGLEEGTGQA PDSGSNPTMK DPVNVTPSSI ENSTTRP00000007531/1-1526 EERGPTIPLE SSPVQALAGD VGLEEGTGQA LDSDSNPTVK DPVNVTPSPI bmy_00533T0/1-1379 EERGPTIPLE NSPVQALAGD VGLEEGTGQA LDSDSNPTVK DPVNVTPSPI BACU015576/1-1515 EERGPTIPLE NSPVQALMGD VGLEEGTGQA LDSDSNPTVK DPVNVTPSPI 851 900 ENSP00000364839/1-1541 PESSPTDCLQ NRAFDDELGL GGSCPPMRES DTRQENLKTK ALVSNSSLHW ENSBTAP00000007795/1-1535 SESSLASCLQ DRPFDDESEL DDSGPPTRES SSRQENLKTE APVSPGAAPW ENSTTRP00000007531/1-1526 PEPSLAGSLQ DRPFDDESGL GGSGPPTRES ATRQENLKTE APVSAGAAPW bmy_00533T0/1-1379 PEPSLAGSLQ DRPFDDESGL GDSGPPTRES ATRQENLKTE APVSTGAAPW BACU015576/1-1515 PEPSLAGSLQ DRPFDDESGL GDSGPPTRES ATRQENLNTE APVSAGAAPW 901 950 ENSP00000364839/1-1541 IPIPSNDEVV KQPKPESREH IPSVEPQVGE EWEKAAPTPP ALPGDLTAEE ENSBTAP00000007795/1-1535 RPGMSNDEAG GQPEPDSREE VPSIKSQVRE KWEKAAPLIP ASPVGLTAEE ENSTTRP00000007531/1-1526 MPGLSNDKAV GQPEPDSRED VPSVEPQVGE EWEKAAPLIP ASPGGLTAEE bmy_00533T0/1-1379 MPGLSNDKAV GQPEPDSRED VPSVKPQVGE EWEKAAPLIP ASPGGLTAEE BACU015576/1-1515 MPGLSNDKAV GQPEPDSRED VPSVKPQVGE EWEKAAPLIP ASPGGLTAEE 951 1000 ENSP00000364839/1-1541 GLDPLDSLTS LWTVPSRGGS DSNGSYCQQV DIEKLKINGD SEALSPHGES ENSBTAP00000007795/1-1535 GLDPPVHLGS LWTVHS-GCV DSSG-DCRQL EGDKPRINGD SEALSPHSES ENSTTRP00000007531/1-1526 GLDPPDSSAS LWTVPSPGCV ASTGHDRRQL EGGKLKISGD SEVLSPHSES bmy_00533T0/1-1379 GLDPPDNLAS LWTVPSPGCV ASTGHDCRQL EGEKLKISGD SEALSPHSES BACU015576/1-1515 GLDSSDNLAS LWTVPSPGCV ASTGHDCRQL EGEKLKISGD SEALSPHSES 1001 1050 ENSP00000364839/1-1541 TDTASDFEGH LTEDSSEADT REAAVTKGSS -VDKDEKPNW NQSAPLSKVN ENSBTAP00000007795/1-1535 TDTASDFEGH FSEDSSEAEP GETLGPKRSL VAEQGEKHSW NHCASLSKVN ENSTTRP00000007531/1-1526 TDTASDFEGH FSEDSIEAEP SEAAVPKRSS AVEQGEKHAW NRSTSLSKVN bmy_00533T0/1-1379 TDTASDFEGH FSEDSTEAEP SEAAVPKRSS EVEQGEKHIW NRSTSLSKVN BACU015576/1-1515 TDTASDFEGH FSEDSTEAEP SEAAVPKRSS EVEQGEKHIW SRSTSLSKVN 1051 1100 ENSP00000364839/1-1541 GDMRLVTRTD GMVAPQSWVS RVCAVRQKIP DSLLLASTEY QPRAVCLSMP ENSBTAP00000007795/1-1535 GDLSLVTRTD GMVAPQSWVS RVCAVPPKIP DSLLLASPEY QPRPMSLGRP ENSTTRP00000007531/1-1526 GDLSLVTRTD GMVAPQSWVS RVCAVPQKIP DSLLLASTEY QPRPVSLGRL bmy_00533T0/1-1379 GDLSLVTRTD GMVAPQSWVS RVCAVPQKIP DSLLLASTEY QPRPVSLGRL BACU015576/1-1515 GDLSLVTRTD GMVAPQSWVS RVCAVPQKIP DSLFLASTEY QPRPVSLGRL 1101 1150 ENSP00000364839/1-1541 GSSVEATNPL VMQLLQGSLP LEKVLPPAHD DSMSESPQVP LTKDQSH-GS ENSBTAP00000007795/1-1535 ASSVEAANPL VMQLLQGHLP LKKVLPPAHG GSKPEPPRLA LTAEQSPGGS ENSTTRP00000007531/1-1526 ASSVEATNPL VMQLLQGSLP LEKVLRPARG GSKPESPRLP LTTEPSHDGS bmy_00533T0/1-1379 ASSVEATNPL VMQLLQGSLP LEKVLRPAHG GSKPESPRLP LTTEQSRGGS BACU015576/1-1515 ASSVEATNPL VMQLLQGSLP LEKVLRPAHG GSKPESPRLP LTTEQSRGGS 1151 1200 ENSP00000364839/1-1541 LRMGSLHGLG KNSGMVDGSS PSSLRALKEP LLPDSCETGT GLARIEATQA ENSBTAP00000007795/1-1535 LGMGSLQGPG ENRCEVGKSS P-------ES LLPESCEAST GFARLEASQA ENSTTRP00000007531/1-1526 LHVGSLQDPA ESSCEVGSSS PSSLRASKES LLPESREAST GLARLEAAQA bmy_00533T0/1-1379 LRMGSLQDPG ESSCEVGSSS PSSLRASKES LLPESREAST GLARLEAAQA BACU015576/1-1515 LLMGSLQDPG ESSCEVGSSS PSSLRASKES LLPESREAST GLARLEAAQA 1201 1250 ENSP00000364839/1-1541 PGAPQKNCKA VPSFDSLHPV TNPITSSRKL EEMDSKEQFS SFSCEDQKEV ENSBTAP00000007795/1-1535 PGAPLKMSKN APSLDSLYPV TNPVAASGKA -EVDFKEQLS PFSFEDQKEA ENSTTRP00000007531/1-1526 PGAPPKISKH ALSLGSLYPV TNPVAASGKV -EVDSKEQFS PFSFEDQKEV bmy_00533T0/1-1379 PGAPPKISKH ALSLDSLYPV TNPMAASGKV EEVDSKEQLS PFSFEDQKEA BACU015576/1-1515 PGAPPKISKH ALSLDSLYPV TNPMAASGKV EEVDSKEQLS PFSFEDQKEA 1251 1300 ENSP00000364839/1-1541 RAMSQDSNSN AAPGKSPGDL TTSRTPRFSS PNVISFGPEQ TGRALGDQSN ENSBTAP00000007795/1-1535 RNLSQCSIST AAPGVSLGNL TTSRAPLFSS PNAVSSGPDQ AGRALGDQNS ENSTTRP00000007531/1-1526 GDLSQCSNSS AAPGTSPGNL TTSRAPCFSS PVVVSSGPDQ AGRALGDQNS bmy_00533T0/1-1379 GDLSQCSNSS AAPGTSPGNL TTSRAPCFSS LNVVSSGPDQ AGRALGDQNS BACU015576/1-1515 GDLSQCSNSS AAPGTSPGNL TTSRAPCFSS PNVVSSGPDQ AGRALGDQNS 1301 1350 ENSP00000364839/1-1541 VTGQGKKLFG SGNVAATLQR PRPADPMPLP AEIPPVFPSG KLGPSTNSMS ENSBTAP00000007795/1-1535 AGGQGKKLFG SKNAAAALQC PRLVEPTPLP AEAPPAFPNR KSGPGKTSLS ENSTTRP00000007531/1-1526 AGGQGKKLFG SKNEAAALQC PRPVEPTPLP ADAPPDFPSR KLGPSKNSVS bmy_00533T0/1-1379 AGGQGKKLFG SKNEATALQC PRPVEPTPLP ADAPPDFPSR KSGPSKNSVS BACU015576/1-1515 AGGQGKKLFG SKNEAAALQC PRPVEPTPLP ADASPDFASR KSGPRKNSVS 1351 1400 ENSP00000364839/1-1541 GGVQTPREDW APK-PHAFVG SVKNEKTFVG GPLKANAENR KATGHSPLEL ENSBTAP00000007795/1-1535 GGIQTAREDW APKPPPASVG SIKSEKTLDG GPLKVDAENR KAVGPGPREL ENSTTRP00000007531/1-1526 GGVQTAREDW APKPPPASVG SIKSEKTFGG GPPKANAENR NVAGPGPREL bmy_00533T0/1-1379 GGVQTAREDW APKPPPASVG SIKSEKTFGG GPLKANAENR NVAGPSPREL BACU015576/1-1515 GGVQTAREDW APKPPPASVG SIKSEKTFGG GPLKANAENR NVAGPSPREL 1401 1450 ENSP00000364839/1-1541 VGHLEGMPFV MDLPFWKLPR EPGKGLSEPL EPSSLPSQLS IKQAFYGKLS ENSBTAP00000007795/1-1535 VDHLQGMPFV LDLPFWKLPR EPGKGLSQPL EPSSIPSQLN IKQAFYGKLS ENSTTRP00000007531/1-1526 VDHLQGIPFV LDLPFWKLPR EPGKGLSQPL EPSSIPSQLN IKQAFYGKLS bmy_00533T0/1-1379 VDHLQGMPFV LDLPFWKLPR EPGKGLSQPL EPSSIPSQLN IKQAFYGKLS BACU015576/1-1515 VDHLQGMPFV LDLPFWKLPR EPGKGLSQPL EPSSIPSQLN IKQAFYGKLS 1451 1500 ENSP00000364839/1-1541 KLQLSSTSFN YSSSSPTFPK GLAGSVVQLS HKANFGASHS ASLSLQMFTD ENSBTAP00000007795/1-1535 KLQLSSTSFN YSSGSPPFPK GLAGSVVQLS HKANFGASHS ASLSLQMFTD ENSTTRP00000007531/1-1526 KLQLSSTSFN YSSGSPTFAK GLAGSVVQLS HKANFGASHS ASLSLQMFTD bmy_00533T0/1-1379 KLQLSSTSFN YSSGSPTFPK GLAGSVVQLS HKANFGASHS ASLSLQMFTD BACU015576/1-1515 KLQLSSTSFN YSSGSPTFPK GLAGSVVQLS HKANFGASHS ASLSLQMFTD 1501 1550 ENSP00000364839/1-1541 SSTVESISLQ CACSLKAMIM CQGCGAFCHD DCIGPSKLCV LCLVVR ENSBTAP00000007795/1-1535 SSTVESISLQ CACSLKAMIM CQGCGAFCHD DCIGPSKLCV LCLVVR ENSTTRP00000007531/1-1526 SSTVESISLQ CACSLKAMIM CQGCGAFCHD DCIGPSKLCV LCLVVR bmy_00533T0/1-1379 SSTVESISLQ CACSLKAMIM CQGCGAFCHD DCIGPSKLCV LCLVVR BACU015576/1-1515 SSTVESISLQ CACSLKAMIM CQGCGAFCHD DCIGPSKLCV LCLVVR