KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:39 2014 Check: 00 .. Name: ENSBTAP00000007684/1-422 Len: 500 Check: 9432 Weight: 1.00 Name: ENSTTRP00000007572/1-423 Len: 500 Check: 8034 Weight: 1.00 Name: ENSP00000318318/1-423 Len: 500 Check: 8626 Weight: 1.00 Name: bmy_01497T0/1-499 Len: 500 Check: 8045 Weight: 1.00 Name: BACU017903/1-403 Len: 500 Check: 3829 Weight: 1.00 // 1 50 ENSBTAP00000007684/1-422 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007572/1-423 ---------- ---------- ---------- ---------- ---------- ENSP00000318318/1-423 ---------- ---------- ---------- ---------- ---------- bmy_01497T0/1-499 MKLWGQRGRG CCREKYTWAK PGLVLRRWPL REVGCWLGCQ RACGWVASSD BACU017903/1-403 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000007684/1-422 --MAAQRVFP LSCVVQQYAW GKMGSNSEVA RLLASSDPLA QISEDRPYAE ENSTTRP00000007572/1-423 --MAAQRVFP LSCVVQQYAW GKMGSNSEVA RLLASSDPLA QISEDKPYAE ENSP00000318318/1-423 --MAAPRVFP LSCAVQQYAW GKMGSNSEVA RLLASSDPLA QIAEDKPYAE bmy_01497T0/1-499 PSRPDMPVFP LSCVVQQYAW GKMGSNSEVA RLLASSDPLA QISEDKPYAE BACU017903/1-403 ---------- ---------- --MGSNSEVA RLLASSDPLG QISEDKPYAE 101 150 ENSBTAP00000007684/1-422 LWMGTHPRGD AKILDNRISQ KTLGQWIADN QDSLGSKVKD TFNGKLPFLF ENSTTRP00000007572/1-423 LWMGAHPRGD AKILDNSILQ KTLGQWIAEN QDCLGSKVKD TFNGKLPFLF ENSP00000318318/1-423 LWMGTHPRGD AKILDNRISQ KTLSQWIAEN QDSLGSKVKD TFNGNLPFLF bmy_01497T0/1-499 LWMGTHPRGD AKILDNSILQ KTLGQWIAEN QDCLGSKVKD TFNGKLPFLF BACU017903/1-403 LWMGTHPRGD AKILDNSILQ KTLGQWIAEN QDCLGSKVKD TFNGKLPFLF 151 200 ENSBTAP00000007684/1-422 KVLSVETALS IQAHPNKELA EKLHLQAPQH YPDANHKPEM AIALTPFQGL ENSTTRP00000007572/1-423 KVLSVETALS IQAHPNKXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000318318/1-423 KVLSVETPLS IQAHPNKELA EKLHLQAPQH YPDANHKPEM AIALTPFQGL bmy_01497T0/1-499 KVLSVETALS IQAHPNKELA EKLHLQAPQH YPDANHKPEM AIALTPFQGL BACU017903/1-403 KVLSVETALS IQAHPNKELA EKLHLQAPQH YPDANHKPEM AIALTPFQGL 201 250 ENSBTAP00000007684/1-422 CGFRPVEEIV TFLTKVPEFQ FLIGDNAAAQ LKQSLSQDSE AVTSALRSCF ENSTTRP00000007572/1-423 XXXXPVEEIV TFLTKVPEFQ FLIGDNAATQ LKQSLSRDSQ TVASALQSCF ENSP00000318318/1-423 CGFRPVEEIV TFLKKVPEFQ FLIGDEAATH LKQTMSHDSQ AVASSLQSCF bmy_01497T0/1-499 CGFRPVEEIV TFLTKVPEFQ FLIGDNAATQ LKQSLSRDSQ AVAFALRSCF BACU017903/1-403 CGFRPVEEIV TFLTKVPEFQ FLIGDNAATQ LKQSLSRDSQ AVAFALRSCF 251 300 ENSBTAP00000007684/1-422 SHLMKSEKKV VVEQLNLLVK RISQQGGSGN DFDGC-GYFK L-LEQSQPGD ENSTTRP00000007572/1-423 SHLMKSEKKV VVEQLNLLVK RISQQVAAGN NMEDIYGELL LQLHQQYPGD ENSP00000318318/1-423 SHLMKSEKKV VVEQLNLLVK RISQQAAAGN NMEDIFGELL LQLHQQYPGD bmy_01497T0/1-499 SHLMKSEKKV VVEQLNLLVK RISQQVAAGN NMEDIYGELL LQLHQQYPGD BACU017903/1-403 SHLMKSEKKV VVEQLNLLVK RISQQVAAGN NMEDIYGELL LQLHQQYPGD 301 350 ENSBTAP00000007684/1-422 TGSRCIKDYT LALLVPGRVV GISIAN---- ---------- ---------V ENSTTRP00000007572/1-423 IGCFAIYFLN LLTLKPGEAM FLE-AN---- ---------- ---------V ENSP00000318318/1-423 IGCFAIYFLN LLTLKPGEAM FLE-AN---- ---------- ---------V bmy_01497T0/1-499 IGCFAIYFLN LLTLKPGEAM FLE-ANGAHG TQVRRPRPGE PNSKASFISL BACU017903/1-403 IGCFAIYFLN LLTLKPGEAM FLE-AN---- ---------- ---------V 351 400 ENSBTAP00000007684/1-422 PH-AYLKGDC VECMACSDNT VRAGLTPKFI DVPTLCEMLS YTPSPSQDRL ENSTTRP00000007572/1-423 PH-AYLKGDC VECMACSDNT VRAGLTPKFI DVPTLCEMLS YIPSPSQDRL ENSP00000318318/1-423 PH-AYLKGDC VECMACSDNT VRAGLTPKFI DVPTLCEMLS YTPSSSKDRL bmy_01497T0/1-499 PHDNCLSPDC VECMACSDNT VRAGLTPKFI DVPTLCEMLS YIPSPSQDRL BACU017903/1-403 PH-AYLKGDC VECMACSDNT VRAGLTPKFI DVPTLCDMLS YIPSPSQDRL 401 450 ENSBTAP00000007684/1-422 FPPARSPEDP YLSIYDPPVP DFTVMKVEVP GSVTEYKVLA LDSASILLVV ENSTTRP00000007572/1-423 FPPARSQEDP YLSIYDPPVP DFTVMKMEVP GSVTEYRVLA LDSASILVMV ENSP00000318318/1-423 FLPTRSQEDP YLSIYDPPVP DFTIMKTEVP GSVTEYKVLA LDSASILLMV bmy_01497T0/1-499 FPPAWSQEDP YLSIYDPPVP DFTVMKMEVP GSVTEYRVLA LDSASILLMV BACU017903/1-403 FPPAWSQEDP YLSIYDPPVP DFTVMKMEVP GSVTEYRVLA LDSASILLMV 451 500 ENSBTAP00000007684/1-422 QGTVTASSPT AQAAIPLKRG GVLFIGANES VSLKLTVPKN LLMFRACCLL ENSTTRP00000007572/1-423 QRTVTASTCT AQATISLKRG GVLFIGANES VSLKLTLPKD LLMFRACCLL ENSP00000318318/1-423 QGTVIASTPT TQTPIPLQRG GVLFIGANES VSLKLTEPKD LLIFRACCLL bmy_01497T0/1-499 QGTVTASTRT AQATISLKRG GVLFIGANES VSLKLTLPED LLMFRACCLL BACU017903/1-403 QGTVTASTRT AQATISLKRG GVLFIGANES VSLKLTLPED LLMFRACCLL