KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:25 2014 Check: 00 .. Name: ENSP00000440847/1-721 Len: 754 Check: 7546 Weight: 1.00 Name: ENSBTAP00000007592/1-684 Len: 754 Check: 8683 Weight: 1.00 Name: ENSTTRP00000001163/1-449 Len: 754 Check: 756 Weight: 1.00 Name: bmy_21371T0/1-549 Len: 754 Check: 2078 Weight: 1.00 Name: BACU010302/1-621 Len: 754 Check: 4278 Weight: 1.00 // 1 50 ENSP00000440847/1-721 ---------- MSISALG--- ----GRTKGK PLPPGEEERN NVLKQMKVRT ENSBTAP00000007592/1-684 ---------- MSISALG--- ----GSSKGK PLPAGEEERN TVLKQMKVRT ENSTTRP00000001163/1-449 ---------- ---------- ---------- ---------- ---------- bmy_21371T0/1-549 ---------- MSISALG--- ----GSSKGK PLPPAEEERN NVLKQMKVRT BACU010302/1-621 MKKNLLVHRF GPVILIGQLC AVSWTSPTGK PLPPGEEERN NVLKQMKVRT 51 100 ENSP00000440847/1-721 TLKGDKSWIT KQDESEGRTI ELPSGRSRAT SFSSAGEVPK P-RPPSTRAP ENSBTAP00000007592/1-684 TLKGDKSWIT KQDESEGRTL ELPSGWTHAT SLSSAGEVPK ASRPLSTRAP ENSTTRP00000001163/1-449 ---------- ---------- ---------- ---------- ---------- bmy_21371T0/1-549 TLKGDKSWIT KQDESESHTL ELPSGRSRAI SFSSAGEVPK A-RPPSTRAP BACU010302/1-621 TLKGDKSWIT KQDESESHTL ELPSGPSHAI SFSSAGGVPK A-RPPSTRAP 101 150 ENSP00000440847/1-721 TGYIIRGVFT KPIDSSSQPQ QQFPKANGTP KSAASLVRTA NAGPPRPSSS ENSBTAP00000007592/1-684 TGYIIRGVFT KPVDSSSQPH QHFPKANGAP KSMASLGKAA PTGPPRPFSS ENSTTRP00000001163/1-449 ---------- ---------- ---------- ---------- ---------- bmy_21371T0/1-549 TGYIIRGVFT KPVDSSSQPQ QHFPKANGAP KSAAGPGKAA PAGPPRPSSS BACU010302/1-621 TGYIIRGVFT KPVDSSSQPQ QHFPKANGAP KR-------- ---------- 151 200 ENSP00000440847/1-721 GYKMTTEDYK KLAPYNIRRS STSGDTEEEE EEEVVPFSSD EQKRRSEAAS ENSBTAP00000007592/1-684 GYKMTTEDYK KLAPYNIRRS SASRAAEEEE ----VRFSSD EQKRRSEAAS ENSTTRP00000001163/1-449 ---MTTEDYK KLAPYNVRRS SASGAAEDEE ----VPFSSD EQKRRSEAAS bmy_21371T0/1-549 GYRMTTEDYK KLAPYNVRRS SASGAAEEEE ----VPFSSD EQKRRSEAAS BACU010302/1-621 ---------- --APYNVRRS SASGAAEEEE ----VPFSSD EQKRRSEAAS 201 250 ENSP00000440847/1-721 GVLRRTAPRE HSYVLSAAKK ST-GPTQETQ APFIAKRVEV VEEDGPSEKS ENSBTAP00000007592/1-684 SVVRKTAPRE HSYVLSAAKK NPGSPAQETL APFIAKRIER VVEDGSSEKS ENSTTRP00000001163/1-449 SVVRKTAPRE HSYVLSAAKK SA-SLAQETQ APFIAKRIEV VDEDGPSKKS bmy_21371T0/1-549 SVVRKTAPRE HSYVLSAAKK SASSLAQETQ APFIAKRVEV VDEDGPSKKS BACU010302/1-621 SVVRKTAPRE HSYVLSAAKK SASSLAQETQ APFIAKRVEV VDEDGPSKKS 251 300 ENSP00000440847/1-721 QDPPALARST PGSNSADGGR TKASRAIWIE CLPSMPSPAG SQEL--SSRG ENSBTAP00000007592/1-684 QDPPALSRFL AGSSSADRGR TKVSQAIWVE L---MLSPGG CQELGCSARG ENSTTRP00000001163/1-449 QDPPALARSP PGSS------ ---------- ---------- ------SARG bmy_21371T0/1-549 QDPPALARSP PGSS------ ---------- ---------- ------SARG BACU010302/1-621 QDPPALARSP PSSS------ ---------- ---------- ------SARG 301 350 ENSP00000440847/1-721 EEIVRLQILT PRAGLRLVAP DVEGMRSSPG NKDKEAPCSR ELQRDLAGEE ENSBTAP00000007592/1-684 EETVRLQITT PGAGLHLVAP HLEGIRSSSG SKDKEVPHPR EPKRNLTNEG ENSTTRP00000001163/1-449 EETVRLQITT PGAGLRLVAP DLEEMRSSPG SKDNEAPNPR EPKRDLTGER bmy_21371T0/1-549 EETARLRITT PGAGLRLVAP DLEETRSS-- ---------- ---------- BACU010302/1-621 EETARLRITT PGVGLCLVAP DLEETRSSPG SKDNEAPNPR EPKRDLTGER 351 400 ENSP00000440847/1-721 AFRAPNTDAA RSSAQLSDGN VGSGATGSRP EGLAAVDIGS ERGRLCAAAS ENSBTAP00000007592/1-684 AFRSPDADSE RSIAQSSDGN MGSEAMGSPD EDLVGADVSS GRGGPCSPAG ENSTTRP00000001163/1-449 AFKGLGADSE R----SSDGN VGSGATGSTP EGLAGADISS GRGG------ bmy_21371T0/1-549 ---------- ---AQSSDGN VGSGATGSIP EGLAGADISS GRGGLCSPAV BACU010302/1-621 AFKGLDADSE RSSAQSSDGN IGSGPTGSTP EGLAGADISS GRGGLSSPAV 401 450 ENSP00000440847/1-721 FASFLEDQDG HSANSQSCKP RPAAISSSAT SVSAVPADRK SNSTAAQEDA ENSBTAP00000007592/1-684 FTPLLDDQEV PSANSQPLKP APATTSSDAI SASAVLANRK SNSLADLEDM ENSTTRP00000001163/1-449 ---------- ---------- ------SGAT SPSAVLAGRK SNSPAHLEDM bmy_21371T0/1-549 FTPLLDDQEV PSANSQPHKP GPAATSSGAT SASAVLADRK SNSPAHLEDM BACU010302/1-621 FTPLLDDQEV PSANSQPHKP GPAATSSGAT SASAVLANRK SNSPAHLDDM 451 500 ENSP00000440847/1-721 KADPKGALAD YEGKDVATRV GEAWQERPGA PRGGQGDPAV PAQQPADPST ENSBTAP00000007592/1-684 ETNPKGTLVV FEEKNVVTKV GEAWQGRPRV LQDDQGDPAV PTQKCTDPST ENSTTRP00000001163/1-449 ETDPKGTSAD FEEENVVTQV GDAWQGRPGA QQDDRGDPAA PTHKPADPSS bmy_21371T0/1-549 ETDPKGTLAD FEDGNVVTKV GDSWQGRPGA QQDDRGDPAA PTQKPADPSS BACU010302/1-621 ETDPKGTLAD FEDENVATKV GDSWQGRPGA QQDDRGDPAA PTQKPADPSS 501 550 ENSP00000440847/1-721 PERQSSPSGS EQLVRRESCG SSVLTDFEGK DVATKVGEAW QDRPGAPRGG ENSBTAP00000007592/1-684 SE-QSSPRNP EQRLEVDSPA NSTLVVFEEK NVVTKVGEAW QGRPGVLQDD ENSTTRP00000001163/1-449 PE-------- ---------- ---------- ---------- ---------- bmy_21371T0/1-549 PE-------- ---------- ---------- ---------- ---------- BACU010302/1-621 PE-------- ---------- ---------- ---------- ---------- 551 600 ENSP00000440847/1-721 QGDPAVPTQQ PADPSTPEQQ NSPSGSEQFV RRESCTSRVR SPSSCMVTVT ENSBTAP00000007592/1-684 QGDPAVPAQQ CTDPSTS-EQ SSPRNPEQRL EVDSPANRMR NPSSCMVSVP ENSTTRP00000001163/1-449 ---------- --------QQ SSPRNPDQHL EVDNQASRAR NPSSCMVTVT bmy_21371T0/1-549 ---------- --------QQ SSPRNPEQHL EVDSQASRMR NPSSCTVTVA BACU010302/1-621 ---------- --------QQ SSPRNPEQHL EVDSPASGTR NPSGCTVTVA 601 650 ENSP00000440847/1-721 VTATSEQPHI YIPAPASELD SSSTTKGILF VKEYVNASEV SSGKPVSARY ENSBTAP00000007592/1-684 SPAPPEQHPI HMPASPSELE PNSTSKGILF VKEYVNAGEV SSRKPLSSFY ENSTTRP00000001163/1-449 VTATSEQPQV YVPGSPSELE SNSTSKGILF MKEYVNAGEV SSGKPLSSFY bmy_21371T0/1-549 VTGTSEQPHV YVPASPSELE SNSTSKGILF MKEYVNAGEV SSGKPL---- BACU010302/1-621 VTATSEQPRV YVPASPSELE SNSTSKGILF MKEYVNAREV SSGKPLSSFY 651 700 ENSP00000440847/1-721 SNVSSIEDSF AMEKKPPCGS TPYSERTTGG ICTYCNREIR DCPKITLEHL ENSBTAP00000007592/1-684 GSIGSNEDSC NMEEKLPYDG TPYSERTSGG ICTYCNREIR DCPKITLEHL ENSTTRP00000001163/1-449 S-VSSIEDSH NMEKKLPHDS TPYSERTSGG VCTYCNQEIG DCPKITLEHL bmy_21371T0/1-549 --VGSTEDSG HMEKKLPRDS TPYSERTSGG ICTYCNQEIG DCPKITLEHL BACU010302/1-621 SSVGSTEDSG HMEKKLPRDS TPYSERTSGG ICTYCNQEIG DCPKITLEHL 701 750 ENSP00000440847/1-721 GICCHEYCFK CGICSKPM-- ---------- GDLLDQIFIH RDTIHCGKCY ENSBTAP00000007592/1-684 GICCHDYCFK ---------- ---------- ---------- ---------- ENSTTRP00000001163/1-449 GLCCHDYCFK CGICSKPM-- ---------- GELLDQIFIH RDTIHCGKCY bmy_21371T0/1-549 ALCCHDYCFK ---------- ---------- ---------- ---------- BACU010302/1-621 GLCCHDYCFK VRKTGGAAES IVHSWGAFMG SESVEKSLSL YECAPCQRLC 751 800 ENSP00000440847/1-721 EKLF ENSBTAP00000007592/1-684 ---- ENSTTRP00000001163/1-449 EKLF bmy_21371T0/1-549 ---- BACU010302/1-621 RTGS