KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:32:12 2014 Check: 00 .. Name: bmy_15804T0/1-728 Len: 1125 Check: 1103 Weight: 1.00 Name: BACU010782/1-305 Len: 1125 Check: 9429 Weight: 1.00 Name: ENSTTRP00000010691/1-1111 Len: 1125 Check: 760 Weight: 1.00 Name: ENSP00000451263/1-1118 Len: 1125 Check: 3951 Weight: 1.00 Name: ENSBTAP00000007488/1-1081 Len: 1125 Check: 9272 Weight: 1.00 // 1 50 bmy_15804T0/1-728 ------MVYC ---------- ---------- ---------- ----ERNLGK BACU010782/1-305 MEPSRALLGC LASAAAAAPP GEDGAGAGAE EEEEEEEEAA AAV-PRELGS ENSTTRP00000010691/1-1111 -MPSRALSGC LANAAAAAPP GEDG-GARAE EEEEEEEEAA AAV-PRELGS ENSP00000451263/1-1118 MEPSRALLGC LASAAAAAPP GEDGAGAGAE EEEEEEEEAA AAVGPGELGC ENSBTAP00000007488/1-1081 MEPSRALLGC LASAAAAAPP GEDGAGAGAE EEEEEEEEAV AA--PRELGC 51 100 bmy_15804T0/1-728 GELYAVFTKA RTVVLRVLKN IPVGLKVLLD ERLRKESGCE G-----VGVQ BACU010782/1-305 DAPLPYWTAV FEYEAVGEDE LTLRLGDVV- EVLSKDSQVS GDEGWWTGQL ENSTTRP00000010691/1-1111 DAPL-YWTAV FEYEAAGEDE LTLRLGDVV- EVLSKDSQVS GDEGWWTGQL ENSP00000451263/1-1118 DAPLPYWTAV FEYEAAGEDE LTLRLGDVV- EVLSKDSQVS GDEGWWTGQL ENSBTAP00000007488/1-1081 GAPLPYWTAV FEYEAAGEDE LTLRLGDVV- EVLSKDSQVS GDEGWWTGQL 101 150 bmy_15804T0/1-728 FSRTGV---- EADPPGRTRA EAAPREGKIQ SYASDQRKEE VLEIDFAELT BACU010782/1-305 NQRVGIFPSN YVTPRSAFSS RCQPGGEDPS CYPPIQ---- LLEIDFAELT ENSTTRP00000010691/1-1111 NQRVGIFPSN YVTPRSAFSS RCQPRGEDPS CYPPIQ---- LLEIDFAELT ENSP00000451263/1-1118 NQRVGIFPSN YVTPRSAFSS RCQPGGEDPS CYPPIQ---- LLEIDFAELT ENSBTAP00000007488/1-1081 NQRVGIFPSN YVTPRSAFSS RCQPGGEDPS CYPPIQ---- LLEIDFAELT 151 200 bmy_15804T0/1-728 LEEIIGIGGF GKVYRAFWIG DEVAVKAARH DPDEDISQTI ENVRQEAKLF BACU010782/1-305 LEEIIGIGGF GKVYRAFWIG DEVAVKAARH DPDEDISQTI ENVRQEAKLF ENSTTRP00000010691/1-1111 LEEIIGIGGF GKVYRAFWIG DEVAVKAARH DPDEDISQTI ENVRQEAKLF ENSP00000451263/1-1118 LEEIIGIGGF GKVYRAFWIG DEVAVKAARH DPDEDISQTI ENVRQEAKLF ENSBTAP00000007488/1-1081 LEEIIGIGGF GKVYRAFWIG DEVAVKAARH DPDEDISQTI ENVRQEAKLF 201 250 bmy_15804T0/1-728 AMLKHPNIIA LRGVCLKEPN LCLVMEFARG GPLNRVLSGK RIPPDILVNW BACU010782/1-305 AMLKHPNIIA LRGVCLKEPN LCLVMEFARG GPLNRVLSGK RIPPDILVNW ENSTTRP00000010691/1-1111 AMLKHPNIIA LRGVCLKEPN LCLVMEFARG GPLNRVLSGK RIPPDILVNW ENSP00000451263/1-1118 AMLKHPNIIA LRGVCLKEPN LCLVMEFARG GPLNRVLSGK RIPPDILVNW ENSBTAP00000007488/1-1081 AMLKHPNIIA LRGVCLKEPN LCLVMEFARG GPLNRVLSGK RIPPDILVNW 251 300 bmy_15804T0/1-728 AVQIARGMNY LHDEAIVPII HRDLKSSNIL ILQKVENGDL SKKVLKITDF BACU010782/1-305 AVQIARGMNY LHDEAIVPII HRDLKSSN-- ---------- -------SEY ENSTTRP00000010691/1-1111 AVQIARGMNY LHDEAIVPII HRDLKSSNIL ILQKVENGDL SKKVLKITDF ENSP00000451263/1-1118 AVQIARGMNY LHDEAIVPII HRDLKSSNIL ILQKVENGDL SNKILKITDF ENSBTAP00000007488/1-1081 AVQIARGMNY LHDEAIVPII HRDLKSSNIL ILQKVENGDL SNKVLKITDF 301 350 bmy_15804T0/1-728 GLAREWHRTT KMSAAGTYAW MAPEVIRASM FSKGSDVWSY GVLLWELLTG BACU010782/1-305 ---------- ---------- ---------- ---------- ---------G ENSTTRP00000010691/1-1111 GLAREWHRTT KMSAAGTYAW MAPEVIRASM FSKGSDVWSY GVLLWELLTG ENSP00000451263/1-1118 GLAREWHRTT KMSAAGTYAW MAPEVIRASM FSKGSDVWSY GVLLWELLTG ENSBTAP00000007488/1-1081 GLAREWHRTT KMSAAGTYAW MAPEVIRASM FSKGSDVWSY GVLLWELLTG 351 400 bmy_15804T0/1-728 EVPFRGIDGL AVAYGVAMNK LALPIPSTCP EPFAKLMEDC WNPDPHSRPS BACU010782/1-305 EMRLEGLQAL S--------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 EVPFRGIDGL AVAYGVAMNK LALPIPSTCP EPFAKLMEXX XXXXXXXXXX ENSP00000451263/1-1118 EVPFRGIDGL AVAYGVAMNK LALPIPSTCP EPFAKLMEDC WNPDPHSRPS ENSBTAP00000007488/1-1081 EVPFRGIDGL AVAYGVAMNK LALPIPSTCP EPFAKLMEDC WNPDPHSRPS 401 450 bmy_15804T0/1-728 FTNILDQLTT IEESGFFEMP KDSFHCLQDD WKHEIQEMFD QLRAKEKELH BACU010782/1-305 ---------- ---------- -DSVH----- ---------- ---------- ENSTTRP00000010691/1-1111 XXXXXXXXXX XXXXXXXXXX XXSFHCLQDD WKHEIQEMFD QLRAKEKELH ENSP00000451263/1-1118 FTNILDQLTT IEESGFFEMP KDSFHCLQDN WKHEIQEMFD QLRAKEKELR ENSBTAP00000007488/1-1081 FTSILDQLTT IEESGFFEMP KDSFHCLQDD WKHEIQEMFD QLRAKEKELR 451 500 bmy_15804T0/1-728 TWEEELTRAA LQQKNQEELL RRREQELAER EIDILERELN VIIHQLCQEK BACU010782/1-305 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 TWEEELTRAA LQQKNQEELL RRRERELAER EIDILQRELH IIIHQLCQEK ENSP00000451263/1-1118 TWEEELTRAA LQQKNQEELL RRREQELAER EIDILERELN IIIHQLCQEK ENSBTAP00000007488/1-1081 TWEEELTRAA LQQKNQEELL RRREQELAER EIDILERELN IIIHQLCQEK 501 550 bmy_15804T0/1-728 PRVKKRKGKF RKNRLKLKDG NRISLPS--- ---------- ---------- BACU010782/1-305 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 PRVKKRKGKF RKNRLKLKDG NRISLPS-DF QHKFTVQASP TMDKRKSLIN ENSP00000451263/1-1118 PRVKKRKGKF RKSRLKLKDG NRISLPS-DF QHKFTVQASP TMDKRKSLIN ENSBTAP00000007488/1-1081 PRVKKRKGKF RKSRLKLKDG NRISLPSADF QHKFTVQASP TMDKRKSLIN 551 600 bmy_15804T0/1-728 ---------- ---------V TPGESSKTWG RSCVXPKEEG EEEEKRAPKK BACU010782/1-305 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 SRSSPPASPT IIPRLRAIQL TPGESSKTWG RSCVVPKEEG EEEEKRAPKK ENSP00000451263/1-1118 SRSSPPASPT IIPRLRAIQL TPGESSKTWG RSSVVPKEEG EEEEKRAPKK ENSBTAP00000007488/1-1081 SRSSPPASPT IIPRLRAIQL TPGESSKTWG RNSVVPKEEG EEEEKRAPKK 601 650 bmy_15804T0/1-728 KGRTWGPGTL GQKEFASGDE ---------- ---------- ---GLKSLVD BACU010782/1-305 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 KGRTWGPGTL GQKEFASGDE GSPQRREKAN GLSTPSESPH FHLGLKSLVD ENSP00000451263/1-1118 KGRTWGPGTL GQKELASGDE GSPQRREKAN GLSTPSESPH FHLGLKSLVD ENSBTAP00000007488/1-1081 KGRTWGPSTL GQKEFASGDE ---------- ---------- ---GLKSLVD 651 700 bmy_15804T0/1-728 GYKQWSSSAP NLGKGPRNSP ALPGFTSLME M--------- ---------- BACU010782/1-305 GFG-WSGFVR NL-------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 GYKQWSSSAP NLGKGPRNSP ALPGFTSLME MAVAP---LW LVDSLEDEDS ENSP00000451263/1-1118 GYKQWSSSAP NLVKGPRSSP ALPGFTSLME MALLAASWVV PIDIEEDEDS ENSBTAP00000007488/1-1081 GYKQWSSSAP NLGKGPRSNP ALPGFTSLME M--------- -----EDEDS 701 750 bmy_15804T0/1-728 ---------- ---------- ---------- ---------- ---------- BACU010782/1-305 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 EGPRSGESRP QPSPNQSYLC IPFPRGEDGD GPPGDGVHEE PTPVNSATST ENSP00000451263/1-1118 EGPGSGESRL QHSPSQSYLC IPFPRGEDGD GPSSDGIHEE PTPVNSATST ENSBTAP00000007488/1-1081 EGPRSGESRL PPSPSQSYLC IPFPRGEDGD GPLSDGGHEE PTPVNSATST 751 800 bmy_15804T0/1-728 ---------- ---------- ---------- ---------- ---------- BACU010782/1-305 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 PQLTPTNSLK RGGPHHRRCE VALLGCGAVL AATGLGCDLL EAGKCQLLPP ENSP00000451263/1-1118 PQLTPTNSLK RGGAHHRRCE VALLGCGAVL AATGLGFDLL EAGKCQLLPL ENSBTAP00000007488/1-1081 PQLTPTNSLK RGGPNHRRCE VALLGCGAVL AATGLGFDLL EAGKCQLLPP 801 850 bmy_15804T0/1-728 ---------- ---------- ---------- ---------- ---------- BACU010782/1-305 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 EEPEPPAREE KKRREGLFQR ASRPRRSTSP PSRKLFKKEE PVLLLGDPSA ENSP00000451263/1-1118 EEPEPPAREE KKRREGLFQR SSRPRRSTSP PSRKLFKKEE PMLLLGDPSA ENSBTAP00000007488/1-1081 EEPEPPAREE KKRREGLFLR ASRPRRSTSP PSRKLFKKEE PVLLLGDPSA 851 900 bmy_15804T0/1-728 ---------- ---------- ---------- ---------- ---------- BACU010782/1-305 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 SLTLLSLSSI SECNSTRSLL RSDSDEIVVY EMPVSPGEAP PLSPCTRNPL ENSP00000451263/1-1118 SLTLLSLSSI SECNSTRSLL RSDSDEIVVY EMPVSPVEAP PLSPCTHNPL ENSBTAP00000007488/1-1081 SLTLLSLSSI SECNSTRSLL RSDSDEIVVY EMPISPVEAP ALSPCTRNPL 901 950 bmy_15804T0/1-728 ---------- ---------- ---------- ---------- ---------- BACU010782/1-305 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 VNVRVERFKR DPRQSLTPTH VTLTAPPQPS AHRRTPSDGA LKPAAPRASR ENSP00000451263/1-1118 VNVRVERFKR DPNQSLTPTH VTLTTPSQPS SHRRTPSDGA LKPETLLASR ENSBTAP00000007488/1-1081 VNVRVERFKR DPKQSLTPTH VTLTAPAQPS AHRRTPSDGA LKPAAPPASR 951 1000 bmy_15804T0/1-728 ---------- ----GMLKTP SPSRDPGEFP RLPDPNVVFP PTPRRWNTQQ BACU010782/1-305 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 SP-SSNGLSP SPGAGMLKTP SPSRDPGEFP RLPDPNVVFP PTPRRWNTQQ ENSP00000451263/1-1118 SP-SSNGLSP SPGAGMLKTP SPSRDPGEFP RLPDPNVVFP PTPRRWNTQQ ENSBTAP00000007488/1-1081 SPSSSNGLSP SPGAGMLKTP SPSRDPGEFP RLPDPNVVFP PTPRRWNTQQ 1001 1050 bmy_15804T0/1-728 DSALERPKTL EFLPRPRPSA NRQRLDPWWF VSPSHARSAS PANSSSTETP BACU010782/1-305 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010691/1-1111 DSALERPKTL EFLPRPRPSA NRQRLDPWWF VSPSHARSAS PANSSSTETP ENSP00000451263/1-1118 DSTLERPKTL EFLPRPRPSA NRQRLDPWWF VSPSHARSTS PANSSSTETP ENSBTAP00000007488/1-1081 DSTLERPKTL EFLPRPRPSA NRQRLDPWWF VSPSHARSAS PANSSSTETP 1051 1100 bmy_15804T0/1-728 SNLDSCLASS SSTVEERPGL PALLPFQAGP LPPAERTLLD LDAEGQSQDG BACU010782/1-305 ---------- ---------- ---------- ---------- ---SGQ---- ENSTTRP00000010691/1-1111 SNLDSCLASS SSTVEERPGL PALPPFQAGP LPPAERTLLD LDAEGQSQDG ENSP00000451263/1-1118 SNLDSCFASS SSTVEERPGL PALLPFQAGP LPPTERTLLD LDAEGQSQDS ENSBTAP00000007488/1-1081 SNLDSCLASS SSTVEDRPGL PTLLPFQAGP LPPTERTLLD LDAEGQSQDS 1101 1150 bmy_15804T0/1-728 TVPLCRAALN THRPAPYEIQ QEFWS BACU010782/1-305 ---------- ---------- ----- ENSTTRP00000010691/1-1111 TVPLCRAALN THRPAPYEIQ QEFWS ENSP00000451263/1-1118 TVPLCRAELN THRPAPYEIQ QEFWS ENSBTAP00000007488/1-1081 TVPLCRAELN THRPAPYEIQ QEFWS