KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:33 2014 Check: 00 .. Name: ENSP00000303511/1-980 Len: 981 Check: 6506 Weight: 1.00 Name: bmy_00068T0/1-900 Len: 981 Check: 3868 Weight: 1.00 Name: ENSBTAP00000007275/1-980 Len: 981 Check: 9138 Weight: 1.00 Name: ENSTTRP00000006606/1-959 Len: 981 Check: 2778 Weight: 1.00 Name: BACU017976/1-879 Len: 981 Check: 2401 Weight: 1.00 // 1 50 ENSP00000303511/1-980 MALAVLRVLE PFPTETPPLA VLLPPGGPWP AAELGLVLAL RPAGESPAGP bmy_00068T0/1-900 MALAVLRVLE PFPTETPPLA VLLPPGGPWP AAGLGLVLAL RPAGESPAGP ENSBTAP00000007275/1-980 MALAVLRVLE PFPTETPALA VLLPPGGPWP AAGLGLVLAL RPAGESPAGP ENSTTRP00000006606/1-959 MALAVLRVLE PFPTETPPLA VLLPPGGPWP AAGLGLVLAL RPAGESPAGP BACU017976/1-879 MTLAVLRVLE PFPTETPPLA VLLPPGGPWP AAGLGLVLAL RPAGESPAGP 51 100 ENSP00000303511/1-980 ALLVAALEGP DAGTEEQGPG PPQLLVSRAL LRLLALGSGA WVRARAVRRP bmy_00068T0/1-900 ALLVAALEGP GAGTEEQGPG PPQLLVSRAL LRLLALGSGA WVRARPVRRP ENSBTAP00000007275/1-980 ALLVAALEGP GAGTEEQGPG PPQLLVSRAL LQLLALGSGA WVRARPVRRP ENSTTRP00000006606/1-959 ALLVAALEGP GAGTEEQGPG PPQLLVSRAL LRLLALGSGA WVRARPVRRP BACU017976/1-879 ALLVAALEGP GAGTEEQGPG PPQLLVSRAL LRLLALGSG- ---------P 101 150 ENSP00000303511/1-980 PALGWALLGT SLGPGLGPRV GPLLVRRGET LPVPGPRVLE TRPALQGLLG bmy_00068T0/1-900 PALGWALLGT SSGPGLGPRV GPLLVRRGET LPVPGPRVLE TRPALQGLLG ENSBTAP00000007275/1-980 PSLGWALLGT SSGPGLGPRV GPLLVRRGET LPVPGPRVLE TRPALQGLLG ENSTTRP00000006606/1-959 PALGWALLGT SSGPGLGPRV GPLLVRRGET LPVPGPRVLE TRPALQGLLG BACU017976/1-879 PALGWALLGT SSGSGLGPRV GPLLVRRGET LPVPGPRVLE TRPALQGLLG 151 200 ENSP00000303511/1-980 PGTRLAVTEL RGRARLCPES GDSSRPPPPP VVSSFAVSGT VRRLQGVLGG bmy_00068T0/1-900 PGTRLAVTEL RGRAKLGPET EDSSRPPPPP VVSSFAASGT VRRLRGVLGG ENSBTAP00000007275/1-980 PGTRLAVTEL RGRAKLGPEA ENSSRLPLPP VVSSFAASGT VRRLRGVLGG ENSTTRP00000006606/1-959 PGTRLAVTEL RGRAKLGPET EDSSRPPPPP VVSSFAASGT VRRLRGVLGG BACU017976/1-879 PGTRLAVTEL RGRAKLGPET EDSSRPPPPP VVSSFAASGT VRRLRGVLGG 201 250 ENSP00000303511/1-980 TGDSLGVSRS CLRGLGLFQG EWVWVAQARE SSNTSQPHLA RVQVLEPRWD bmy_00068T0/1-900 TGDALGVSRS CLRNLSLFQG EWVWVTRAGE SSNTSQPHLA TVQVLEPRWD ENSBTAP00000007275/1-980 TGDALGVSRS CLRSLSLFQG EWVWVTRAGE SSNTSQPHLA TVQVLEPRWN ENSTTRP00000006606/1-959 TGDALGVSRS CLRSLSLFQG EWVWVTRAGE SSNISQPHLA TVQVLEPRWD BACU017976/1-879 TGDALGVSRS CLRNLSLFQG EWVWVTRAGE SSNTSQPHLA TVQVLEPRWD 251 300 ENSP00000303511/1-980 LSDRLGPGSG PLGEPLADGL ALVPATLAFN LGCDPLEMGE LRIQRYLEGS bmy_00068T0/1-900 LCERLGPSSG QLGEPLADGL ALVPATLAFN LGCDPLEVGE LKIQRYLEGS ENSBTAP00000007275/1-980 LSERLGPGSG QPGEPLADGL ALVPATLAFN LGCDPLDVGE LKIQRYLEGS ENSTTRP00000006606/1-959 LCERLGPSSG QLGEPLADGL ALVPATLAFN LGCDPLEVGE LKIQRYLEGS BACU017976/1-879 LCERLGPSSG QLGQPLADGL ALVPATLAFN LGCDPLEVGE LKIQRYLEGS 301 350 ENSP00000303511/1-980 IAPEDKGSCS LLPGPPFARE LHIEIVSSPH YSTNGNYDGV LYRHFQIPRV bmy_00068T0/1-900 STPEDRGSCS VLPGPPFAKE LHIEIVSSPH YSTNGTYDHV LYRHFQTPRP ENSBTAP00000007275/1-980 STPEDKGSCS VLPGPPFAKE LHIEIVSSPH YSTNGNYDHV LYRHFQTPRA ENSTTRP00000006606/1-959 STPEDKGSCS VLPGPPFAKE LHIEIVSSPH YSTNGTYDHV LYRHFQTPXX BACU017976/1-879 STPEDKGSCS VLPGPPFAKE LHIEIVSSPH YSTNGTYDHV LYRHFQTPRA 351 400 ENSP00000303511/1-980 VQEGD-VLCV PTIGQVEILE GSPEKLPRWR EMFFKVKKTV GEAPDGPASA bmy_00068T0/1-900 GGLGDRALCC P--------- ---------- ---------- -EAPP-PARG ENSBTAP00000007275/1-980 VQEGD-VLCV PTVGQVEILE ASPEKLPRWQ EMFFKVKRTV GEAPDGQARA ENSTTRP00000006606/1-959 XXXXX-XXXX XXXXXXXXXX XXXXXXXXWR EMFFKVKKTV GEAPDGPTRA BACU017976/1-879 VQEGD-VLCV PTVGQVEILE GSPEKLPRWR EMFFKVKKTV GEAPDGPTRA 401 450 ENSP00000303511/1-980 YLADTTHTSL YMVGSTLSPV PWLPSEESTL WSSLSPPGLE ALVSELCAVL bmy_00068T0/1-900 CPADRNRQC- ---------- ---------- -PSTGPPG-- -QWEDHCSCC ENSBTAP00000007275/1-980 YLADSAHTSL YLVGSTLSLV PRLPSGDSTP WSSLSPPGLE ALVTELCTAL ENSTTRP00000006606/1-959 YVADTTHTSL YLVGSTLSLV PRLPSGESTP WSSLSPPGLE GLVTELCAAL BACU017976/1-879 YVADTTHTSL YLVGSTLSLV PRLPSGESTP WSSLSPPGLE GLVTELCAAL 451 500 ENSP00000303511/1-980 KPRLQPGGAL LTGTSSVLLR GPPGCGKTTV VAAACSHLGL HLLKVPCSSL bmy_00068T0/1-900 RLQL-PRAPL TEGPS----- GPPP------ ---------- ---QVPCSSL ENSBTAP00000007275/1-980 KPRLQPGGAL LTGTGSVLLR GPPGSGKTTA VAAACSRLGL HLLKVPCSSL ENSTTRP00000006606/1-959 KPRLQPGGAL LTGTGSVLLR GPPGSGKTTA VAAACSCLGL HLLKVPCSSL BACU017976/1-879 KPRLQPGGAL LTGTGSVLLR GPPGSGKTTA VAAACNCLGL HLLKVPCSSL 501 550 ENSP00000303511/1-980 CAESSGAVET KLQAIFSRAR RCRPAVLLLT AVDLLGRDRD GLGEDARVMA bmy_00068T0/1-900 CADSSGAVET KLQATFSRAG RCRPVVLLLT AVDLLGRDRD GLGEDARVVA ENSBTAP00000007275/1-980 CADSSGAVET KLQAAFSRAR RCRPVVLLLT AVDLLGRDRD GLGEDARVVA ENSTTRP00000006606/1-959 CADSSGAVET KLQATFSRAG RCRPVVLLLT AVDLLGRDR- --GEDA---- BACU017976/1-879 CADSSGAVET KLQATFSRAG RCRPVVLLLT AVDLLGRDRD GL-------- 551 600 ENSP00000303511/1-980 VLRHLLLNED PLNSCPPLMV VATTSRAQDL PADVQTAFPH ELEVPALSEG bmy_00068T0/1-900 TLRRLLLDED PLTSCPPLMV VATTSRAQDL PVDVQTAFPH ELEVPVLSEG ENSBTAP00000007275/1-980 TLRHLLLDED PLASCPPLMV VATTSRAQDL PADVQTAFPH ELEVPVLAEA ENSTTRP00000006606/1-959 ---------- ----CPPLMV VATTSRAQDL PVDVQTAFPH ELEVPVLSEG BACU017976/1-879 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000303511/1-980 QRLSILRALT AHLPLGQEVN LAQLARRCAG FVVGDLYALL THSSRAACTR bmy_00068T0/1-900 QRLSILRALT AHLPLGQEVN LAQLARRCAG FVVGDLYALL THSSRAACTR ENSBTAP00000007275/1-980 QRLSVLRALT AHLPLGQEVN LAQLARRCAG FVVGDLFALL THSSRAACTR ENSTTRP00000006606/1-959 QRLSILRALT AHLPLGQEVN LAQLARRCAG FVVGDLYALL THSSRAACTR BACU017976/1-879 ---------- -----GEDAR VVATLRR--- --------LL LDEDPL---- 651 700 ENSP00000303511/1-980 IKNSGLAGGL TEEDEGELCA AGFPLLAEDF GQALEQLQTA HSQAVGAPKI bmy_00068T0/1-900 IKNSGWAGGL SEEDEGELCA AGFPLLAEDF GQALEQLQSA HSQAVGAPKI ENSBTAP00000007275/1-980 IKNSGWAGGL SEEDEGELCA AGFPLLAEDF GQALEQLQAA HSQAIGAPRI ENSTTRP00000006606/1-959 IKNSGWAGGL SAEDEGELCA AGFPLLAEDF GQALEQLQSA HSQAVGAPKI BACU017976/1-879 ---TSWAGGL SEEDEGELCA AGFPLLAEDF GQALEQLQSA HSQAVGAPKI 701 750 ENSP00000303511/1-980 PSVSWHDVGG LQEVKKEILE TIQLPLEHPE LLSLGLRRSG LLLHGPPGTG bmy_00068T0/1-900 PLVSWHDVGG LQEVKKEILE TIQLPLEHPE LLSLGLRRSG LLLHGPPGTG ENSBTAP00000007275/1-980 PSVSWHDVGG LQEVKKEILE TIQLPLEHPE LLSLGLRRSG LLLHGPPGTG ENSTTRP00000006606/1-959 PLVSWHDVGG LQEVKKEILE TIQLPLEHPE LLSLGLRRSG LLLHGPPGTG BACU017976/1-879 PLVSWHDVGG LQEVKKEILE TIQLPLEHPE LLSLGLRRSG LLLHGPPGTG 751 800 ENSP00000303511/1-980 KTLLAKAVAT ECSLTFLSVK GPELINMYVG QSEENVREVF ARARAAAPCI bmy_00068T0/1-900 KTLLAKAVAT ECSLTFLSVK GPELINMYVG QSEENVREVF ARARAAAPCV ENSBTAP00000007275/1-980 KTLLAKAVAT ECSLTFLSVK GPELINMYVG QSEENVREVF ARARAAAPCI ENSTTRP00000006606/1-959 KTLLAKAVAT ECSLTFLSVK GPELINMYVG QSEENVRHVF ARARAAAPCI BACU017976/1-879 KTLLAKAVAT ECSLTFLSVK GPELINMYVG QSEENVREVF ARARAAAPCI 801 850 ENSP00000303511/1-980 IFFDELDSLA PSRGRSGDSG GVMDRVVSQL LAELDGLHST QDVFVIGATN bmy_00068T0/1-900 IFFDELDSLA PSRGRSGDSG GVMDRVVSQL LAELDGLHST QDVFVIGATN ENSBTAP00000007275/1-980 IFFDELDSLA PNRGRSGDSG GVMDRVVSQL LAELDGLHST QDVFVIGATN ENSTTRP00000006606/1-959 IFFDELDSLA PSRGRSGDSG GVMDRVVSQL LAELDGLHST QDVFVIGATN BACU017976/1-879 IFFDELDSLA PSRGRSGDSG GVMDRVVSQL LAELDGLHST QDVFVIGATN 851 900 ENSP00000303511/1-980 RPDLLDPALL RPGRFDKLVF VGANEDRASQ LRVLSAITRK FKLEPSVSLV bmy_00068T0/1-900 RPDLLDPALL RPGRFDKLVF VGVSEDRASQ LRVLSAITRK FRLEPSVSLV ENSBTAP00000007275/1-980 RPDLLDPALL RPGRFDKLVF VGVNEDRASQ LRVLSAITRK FRLEPSVSLV ENSTTRP00000006606/1-959 RPDLLDPALL RPGRFDKLVF VGVSEDRASQ LRVLSAITRK FRLEPSVSLV BACU017976/1-879 RPDLLDPALL RPGRFDKLVF VGVSEDRASQ LRVLSAITRK FRLEPSVSLV 901 950 ENSP00000303511/1-980 NVLDCCPPQL TGADLYSLCS DAMTAALKRR VHDLEEGLEP GSSALMLTME bmy_00068T0/1-900 DVLDHCPPQL TGADLYSLCS DAMTAALKRR VRDLEEGLEP GSSALLLTME ENSBTAP00000007275/1-980 DVLDHCPPQL TGADLYSLCS DAMTAALKRR VRDLEEGLEP GSSALLLTME ENSTTRP00000006606/1-959 DVLDHCPPQL TGADLYSLCS DAMTAALKRR VRDLEEGLEP GSSALLLTTE BACU017976/1-879 DVLDHCPPQL TGADLYSLCS DAMTAALKRR VQDLEEGLEP GSSALLLTME 951 1000 ENSP00000303511/1-980 DLLQAAARLQ PSVSEQELLR YKRIQRKFAA C bmy_00068T0/1-900 DLLQAAARLQ PSVSEHELFR YKSIQRKFAA C ENSBTAP00000007275/1-980 DLLQAAARLQ PSVSEQELLR YKRIQRKFAA C ENSTTRP00000006606/1-959 DLLQAAARLQ PSVSEHELLR YKSIQRKFAA C BACU017976/1-879 DLLQAAARLQ PSVSEHELLR YKSIQRKFAA C