KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:23 2014 Check: 00 .. Name: ENSP00000412724/1-845 Len: 935 Check: 3969 Weight: 1.00 Name: ENSBTAP00000007200/1-914 Len: 935 Check: 7114 Weight: 1.00 Name: ENSTTRP00000004854/1-846 Len: 935 Check: 6519 Weight: 1.00 Name: bmy_15491T0/1-725 Len: 935 Check: 7870 Weight: 1.00 Name: BACU010935/1-919 Len: 935 Check: 3555 Weight: 1.00 // 1 50 ENSP00000412724/1-845 MATIAAAAFE ALMDGVTCWD VPRGPIPSEL LLIGEAAFPV MVNDKGQVLI ENSBTAP00000007200/1-914 MATTPAAAFE ALMDGVTSWE LPEGPVPSEL LLTGEAAFPV MVNDKGQVLI ENSTTRP00000004854/1-846 MATTPAAAFE ALMDGVTSWD VPKGPIPSEL LLTGEAAFPV MVNDQGQVLI bmy_15491T0/1-725 ---------- ---------- ---------- ---------- ---------- BACU010935/1-919 MATTPAAAFE ALMDGVTSWD VPKGPIPSEL LLTGEAAFPV MVNDQGQVLI 51 100 ENSP00000412724/1-845 AASSYGRGRL VVVSHEGYLS HTGLAPFLLN AVSWLCPCPG APVGVHPSLA ENSBTAP00000007200/1-914 AASFYGRGRL VVVSHEGYLL DAGLARFLLN AVRWLSPSPG APVGVHPSLA ENSTTRP00000004854/1-846 AASSYGRGRL VVVSHEGYLL DAGLAPFLLN AVGWLCPSPG APVGVHPSLA bmy_15491T0/1-725 ---------- ---------- ---------- ---------- ---------- BACU010935/1-919 AASSYGRGRL VVASHEGYLL DAGLAPFLLN AAGWLSPSPG APVGVHPSLA 101 150 ENSP00000412724/1-845 PLVNILQDAG LEAQVKPEPG EPLGVYCINA YNDTLTATLI QFVKHGGGLL ENSBTAP00000007200/1-914 SLAHILEGSG VEAQVHPEPA EPLGVYCISA YNDTMTAELI QFVKRGGGLL ENSTTRP00000004854/1-846 SLANILQGSG VEAQIQPEPR EPLGVYCINA YNDTMTAELI QFVKRGGGLL bmy_15491T0/1-725 ---------- ---------- ---------- ---------- ---------- BACU010935/1-919 SLANILQGSG VEAQIQPEPR EPLGVYCINA YNDTMTAELI QFVKRGGGLL 151 200 ENSP00000412724/1-845 IGGQAWYWAS QHGPDKVLSR FPGNKVTSVA GVYFTDTYGD RDRFKVSKKV ENSBTAP00000007200/1-914 IGGQAWHWAS QHGSDQVLSE FPGNQVTSVA GVYFTDTYGV KGRFKVSKKV ENSTTRP00000004854/1-846 MGGQAWYWAS QHGRDKVLSK FPGNQVTSVA GVYFTDTCGD RSRFKVSKKV bmy_15491T0/1-725 ---------- ---------- ---------- ---------- ---------- BACU010935/1-919 MGGQAWYWAS QHGHDKVLSK FPGNQVTSVA GVYFTDTCGD RSRFKVSKKV 201 250 ENSP00000412724/1-845 PKIPLHVRYG EDVRQDQQQL LEGISELDIR TGGVPSQLLV HGALAFPLGL ENSBTAP00000007200/1-914 PKIPLQVRCG EDLRQDQQQL LEGISELDIG TKGLPSQLLV HGALAFPLGL ENSTTRP00000004854/1-846 PKIPLQVXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15491T0/1-725 --------FG EDLRQHQQEL LEGVSELDIK AGGIPSQLLV HGALAFPLGL BACU010935/1-919 PKIPLQVRFG EDLRQHQQEL LEGVSELDIK TGGIPSQLLV HGALAFPLGL 251 300 ENSP00000412724/1-845 DASLNCFLAA AHYGRGRVVL AAHECLLCAP KMGPFLLNAV RWLARGQTGK ENSBTAP00000007200/1-914 DASLRCFLAA ARYGRGRVVL AAHEGMLSAP SLGPFLLNAV RWLAKGQTGK ENSTTRP00000004854/1-846 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXAV RWLARGQMRK bmy_15491T0/1-725 DASLGCFLAA ARYGRGRVVL AAHEGMLCTP KMGPFLLNAV RWLARGQTSK BACU010935/1-919 DASLGCFLAA ARYGRGRVVL AAHEGMLCTP KMGPFLLNAV RWLARGQTSK 301 350 ENSP00000412724/1-845 VGVNTNLKDL CPLLSEHGLQ CSLEPHLNSD LCVYCCKAYS DKEAKQLQEF ENSBTAP00000007200/1-914 VGVNTSLEKL HTLLLEHGLE CSLEPHLTSG VCVYCCTAYS DKEAKQLQEF ENSTTRP00000004854/1-846 VGVNTRLKNL CALLSEHGLE CSLEPRLTAD LSVYCCVAYS DKEAKQLQEF bmy_15491T0/1-725 VGVNTHLKNL CALLSERGLE CSLEPHLTAD LSVYCCVAYS DKEAKQLQEF BACU010935/1-919 VGVNTRLKNL CALLSERGLE CSLEPRLTAD LSVYCCAAYS DTEAKQLHEF 351 400 ENSP00000412724/1-845 VAEGGGLLIG GQAWWWASQN PGHCPLAGFP GNIILNCFGL SILPQTLKAG ENSBTAP00000007200/1-914 VAEGGGLLIG GHAWWWASQN PGRSALADFP GNVILNSFGL SILPWTLDPG ENSTTRP00000004854/1-846 VAEGGGLLIG GQAWWWASQN PGRSTLASFP GNVILNCFGL SILARTLEPG bmy_15491T0/1-725 VAEGGGLLIG GQAWWWASQN PGRSTLASFP GNVILNCFGL SILARTLDPG BACU010935/1-919 VAEGGGLLIG GQAWWWASQN PGRSTLASFP GNVILNCFGL SILARTLDPG 401 450 ENSP00000412724/1-845 CFPVPTPEMR SYHFRKALSQ FQAILNHENG NLEKSCLAKL RVDGAAFLQI ENSBTAP00000007200/1-914 CFPVPSADSL NYHFRKALSE FQATLNLEGG NLEKNWLAKL RVDGAAFLQI ENSTTRP00000004854/1-846 CFPVPNPEKQ SYHFRKALSE FQLIVNRGGG NLEKSWLAKL GADAASFLQI bmy_15491T0/1-725 CFPVPTPEKQ SYHFRKALSE FQLIVNHGGG NLEESWLAKL GADGAGFLQI BACU010935/1-919 CFPVPTPEKQ SYHFRKALSE FQLIVNHGGG SLEKSWLAKL GADGAGFLQI 451 500 ENSP00000412724/1-845 PAEGVPAYIS LHRLLRKM-- LRGSGLPAVS RENPVASDSY EAAVLSLATG ENSBTAP00000007200/1-914 PAEGVPAYAS LHRLLRKQLR LRLSGFPAVS RENPVAGDSC EAVVLCLATE ENSTTRP00000004854/1-846 PAEGVPAYAS LHRLLRKM-- LHVSGLPAVS REKPVASDSY EAALLCLATE bmy_15491T0/1-725 PAEGVPAYAS VHRLLRKM-- LHLSGLPAVS RENPVASDSY EAALLCLATE BACU010935/1-919 PAEGVPAYAS LHRLLRKM-- LHLSGLPAVS RENPVASDSY EAALLCLATE 501 550 ENSP00000412724/1-845 LAHSGTDCSQ LAQGLGTWTC SSSLYPSKHP ITVEINGINP GNNDCWVSTG ENSBTAP00000007200/1-914 LARSGTDCSE LAQGLGAWSC SSNLCPSEH- -TVEINARNP -SDDAWMSTG ENSTTRP00000004854/1-846 LARSGTDCSQ LAQGLGTWSC SSSSYPSEHA ITVEIDGSNP GSGDSWVSTG bmy_15491T0/1-725 LARSGTDCSQ LAQGLGTWSC SSGSYPSEHA ITVEIDGSNP GSGDSWVSTG BACU010935/1-919 LARSGTDCSQ LAQGLGTWSC SSGSYPSEHA ITVEIDGSNP GSGDSWVSTG 551 600 ENSP00000412724/1-845 LYLLEGQNAE VSLSEAAASA GLR------- -------VQI GCHTDDLTKA ENSBTAP00000007200/1-914 LYLPNGQLTE VCLCEAAACA GLK------- -------LQI GCHTDNLMSA ENSTTRP00000004854/1-846 LYLPNGQNAE VSLSEAAVFA GLK------- -------VQI GCHTDDLTSA bmy_15491T0/1-725 LYLPNGQNAE VSLSEAAVFA GLKYHTPTAH MVESPLQVQI GCHTDDLTSA BACU010935/1-919 LYLPNGQNAE VSLSEAAVFA GLK------- -------VQI GCHTDDLTRA 601 650 ENSP00000412724/1-845 RKLSRAPVVT HQCWMDRTER SVSCLWGGLL YVIVPKGSQL GPVPVTIRGA ENSBTAP00000007200/1-914 SKLSRAPVVT HQCHMDRTEQ LVSNLWGGLL YVIVPTGCNL GPMSITIKRA ENSTTRP00000004854/1-846 SKLSRAPVVT HQCCMDRTKL SVSCLWGGLL YVIVPKGSKL GPVSVTIKRA bmy_15491T0/1-725 SKLSRAPVVT HQCCMDKTKL SVSCLWGGLL YVIVPKGSKL GPVSVTIKRA BACU010935/1-919 SKLSRAPVVT HQCCMDRTKR SVSCLWGGLL YVIVPKGSKL GPVSVTIKRA 651 700 ENSP00000412724/1-845 VPAPYYKLGK TSLEEWKRQM QENLAPWGEL ATDNIILTVP TTNLQALKDP ENSBTAP00000007200/1-914 VPAPYYKLGE TSLEAWRSCI QESPAPWGEL ATDNIILTVP TADLRALEDP ENSTTRP00000004854/1-846 VPAPYYRLGK TSLEEWKWRI QESTAPWGEL ATDNIILTVP TADLQALEDP bmy_15491T0/1-725 VPAPYYRLGK TSLEEWERSI QESTAPWGEL ATDNIILTVP TADLQALEDP BACU010935/1-919 VPAPYYRLGK TSLEEWKRHI QESTAPWGEL ATDNIILTVP TADLQALEDP 701 750 ENSP00000412724/1-845 EPVLRLWDEM MQAVARLAAE PFPFRRPERI VADVQISAGW MHSGYPIMCH ENSBTAP00000007200/1-914 EPLLRLWDEM MEAIARLAAQ PFPFRRPERI VADVQISAGW MHSGYPIMCH ENSTTRP00000004854/1-846 ESLLHLWDEM MRAIARLAAQ PFPFLRPERI VADVQISAGW MHSGYPIMCH bmy_15491T0/1-725 ESLLHLWDEM MRAIARLAAQ PFPFLRPERI VADVQISAGW MHSGYPIMCH BACU010935/1-919 ESLLHLWDEM MRAIARLAAQ PFPFLRPERI VADVQISAGW MHSGYPIMCH 751 800 ENSP00000412724/1-845 LESVKEIINE MDMRSRGVWG PIHELGHNQQ RHGWEFPPHT TEATCNLWSV ENSBTAP00000007200/1-914 LESVSELIDE TGMRSRGLWG PVHELGHNQQ REQWEFPPHT TEATCNLWSV ENSTTRP00000004854/1-846 LQSVQELISE MGMRSRGLWG AIHELGHNQQ RHGWEFPPHT TEATCNLWSV bmy_15491T0/1-725 LQSVQELISE MGMRSRGLWG AIHELGHNQQ RHGWEFPPHT TEATCNLWSV BACU010935/1-919 LQSVQELISE MGIRSRGLWG SIHELGHNQQ RHGWEFPPHT TEATCNLWSV 801 850 ENSP00000412724/1-845 YVHETVLGIP RAQAHEALSP PERERRIKAH LGKGAPLCDW NVWTALETYL ENSBTAP00000007200/1-914 YVHETVLGIP RAQAHPALSP PERENRIKTH LEKGAPLCDW KVWTALETYL ENSTTRP00000004854/1-846 YVHETVLHIP RAQAHPALSP PEREKRIKTH LGKGAPLNDW NVWTALETYL bmy_15491T0/1-725 YVHETVLHIP RAQAHPALSP PEREKRIKTH LGKGAPLNNW NVWTALETYL BACU010935/1-919 YVHETVLHIP RAQAHPALSP PERDKRIKTH LGKGAPLNDW NVWTALETYL 851 900 ENSP00000412724/1-845 Q--------- ---------- ---VLSRNSG RRG------- ---------- ENSBTAP00000007200/1-914 QLQEAFGWEP FTQLFAEYQT LSDIPNDNPG KMNLWVRKFS EKVQKNLAPF ENSTTRP00000004854/1-846 K--------- ---------- ---VLNRNSG R--------- ---------- bmy_15491T0/1-725 KLQEAFGWEP FTQLFAEYQT LSDIPKDNTG KMNLWVKKFS ERVQKNLAPF BACU010935/1-919 KLQEAFGWEP FTQLFAEYQT LSDIPKDNTG KMNLWVKKFS ERVQKNLAPF 901 950 ENSP00000412724/1-845 ---------- ---------- ---------- ----- ENSBTAP00000007200/1-914 FEAWGWPVEK EVASSLACLP EWEENPMRMY I---- ENSTTRP00000004854/1-846 ---------- -------CGP ---------- ----- bmy_15491T0/1-725 FEAWGWPVQK EVAASLACLP EWQENPVQMY IQTED BACU010935/1-919 FEAWGWPVQK EVAASLACLP KWQENPMQMY IQTED