KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:31:03 2014 Check: 00 .. Name: ENSTTRP00000002628/1-941 Len: 1025 Check: 1377 Weight: 1.00 Name: ENSP00000475301/1-940 Len: 1025 Check: 3049 Weight: 1.00 Name: ENSBTAP00000007042/1-941 Len: 1025 Check: 2506 Weight: 1.00 Name: BACU017335/1-1008 Len: 1025 Check: 6388 Weight: 1.00 Name: bmy_03251T0/1-878 Len: 1025 Check: 1147 Weight: 1.00 // 1 50 ENSTTRP00000002628/1-941 MAAYLQWRRF VFFDKELVKE PLGNDGAAPG AAPASGPSAS KFLCLPPGIT ENSP00000475301/1-940 MAAYLQWRRF VFFDKELVKE PLSNDGAAPG ATPASGSAAS KFLCLPPGIT ENSBTAP00000007042/1-941 MATYLQWRRF VFFDKELVKE PQGNDGAAPG AAPASGPAAS KFLCLPPGIT BACU017335/1-1008 MAAYLQWRRF VFFDKELVKE PLGNDGAAPG AAPASGPSAS KFLCLPPGIT bmy_03251T0/1-878 ------MEGQ IWF------- ---------- ---------- ----LP---- 51 100 ENSTTRP00000002628/1-941 VCDSGRGSLV FGDMEGQIWF LPRSLQLTGF QAYKLRVTHL YQLKQHNILA ENSP00000475301/1-940 VCDSGRGSLV FGDMEGQIWF LPR-SQLTGF QAYKLRVTHL YQLKQHNILA ENSBTAP00000007042/1-941 VCDSGRGSLV FGDMEGQIWF LPRSLQLTGF QAYKLRVTHL YQLKQHNILA BACU017335/1-1008 VCDSGRG--- ---------- ----SLLTGF QAYKLRVTHL YQLKQHNILA bmy_03251T0/1-878 -----RS--- ---------- ----LQLTGF QAYKLRVTHL YQLKQHNILA 101 150 ENSTTRP00000002628/1-941 SVGEDEEGIN PLVKIWNLEK RDGGNPLCTR IFPAIPGAEP TVVSCLTVHE ENSP00000475301/1-940 SVGEDEEGIN PLVKIWNLEK RDGGNPLCTR IFPAIPGTEP TVVSCLTVHE ENSBTAP00000007042/1-941 SVGEDEEGIN PLVKIWNLEK RDGGNPLCTR IFPAIPGTEP TVVSCLTVHE BACU017335/1-1008 SVGEDEEGIN PLVKIWNLEK RDGGNPLCTR IFPAIPGAEP TVVSCLTVHE bmy_03251T0/1-878 SVGEDEEGIN PLVKIWNLEK RDGGNPLCTR IFPAIPGAEP TVVSCLTVHE 151 200 ENSTTRP00000002628/1-941 NLNFMAIGFT DGSVTLNKGD ITRDRHSKTQ ILHKGNYPVT GLAFRQAGKT ENSP00000475301/1-940 NLNFMAIGFT DGSVTLNKGD ITRDRHSKTQ ILHKGNYPVT GLAFRQAGKT ENSBTAP00000007042/1-941 NLNFMAIGFT DGSVTLNKGD ITRDRHSKTQ ILHKGSYPVT GLAFRQAGKT BACU017335/1-1008 NLNFMAIGFT DGSVTLNKGD ITRDRHSKTQ ILHKGNYPVT GLAFRQAGKT bmy_03251T0/1-878 NLNFMAIGFT DGSVTLNKGD ITRDRHSKTQ ILHKGNYPVT GLAFRQAGKT 201 250 ENSTTRP00000002628/1-941 THLFVVTTEN VQSYIVSGKD YPRVELDTHG CGLRCSALSD PSQDLQFIVA ENSP00000475301/1-940 THLFVVTTEN VQSYIVSGKD YPRVELDTHG CGLRCSALSD PSQDLQFIVA ENSBTAP00000007042/1-941 THLFVVTTEN VQSYIVSGKD YPRVELDTHG CGLRCSALSD PSQDLQFIVA BACU017335/1-1008 THLFVVTTEN VQSYIVSGKD YPRVELDTHG CGLRCSALSD PSQDLQFIVA bmy_03251T0/1-878 THLFVVTTEN VQSYIVSGKD YPRVELDTHG CGLRCSALSD PSQDLQFIVA 251 300 ENSTTRP00000002628/1-941 GDECVYLYQP DERGPCFAFE GHKLIAHWFR GYLVIVSRDR KVSPKSEFTS ENSP00000475301/1-940 GDECVYLYQP DERGPCFAFE GHKLIAHWFR GYLIIVSRDR KVSPKSEFTS ENSBTAP00000007042/1-941 GDECVYLYQP DERGPCFAFE GHKLIAHWFR GYLVIVSRDR KVSPKSEFTS BACU017335/1-1008 GDECVYLYQP DERGPCFAFE GHKLIAHWFR GYLVIVSRDR KVSPKSEFTS bmy_03251T0/1-878 GDECVYLYQP DERGPCFAFE GHKLIAHWFR GYLVIVSRDR KVSPKSEFTS 301 350 ENSTTRP00000002628/1-941 RDSQSSDKQI LNIYDLCNKF IAYSTVFEDV VDVLAEWGSL YVLTRDGRVH ENSP00000475301/1-940 RDSQSSDKQI LNIYDLCNKF IAYSTVFEDV VDVLAEWGSL YVLTRDGRVH ENSBTAP00000007042/1-941 RDSQSSDKQI LNIYDLCNKF IAYSAVFEDV VDVLAEWGSL YVLTRDGRVH BACU017335/1-1008 RDSQSSDKQI LNIYDLCNKF IAYSTVFEDV VDVLAEWGSL YVLTRDGRVH bmy_03251T0/1-878 RDSQSSDKQI LNIYDLCNKF IAYSTVFEDV VDVLAEWGSL YVLTRDGRVH 351 400 ENSTTRP00000002628/1-941 ALQEKDTQTK LE-------- ---------- ---------- ---------- ENSP00000475301/1-940 ALQEKDTQTK LE-------- ---------- ---------- ---------- ENSBTAP00000007042/1-941 ALQEKDTQTK LE-------- ---------- ---------- ---------- BACU017335/1-1008 ALQEKDTQTK LEARPPDSQS WPWAPRRSSR NRLPKSLGQG VSFPLGHLLS bmy_03251T0/1-878 ALQEKDTQTK LE-------- ---------- ---------- ---------- 401 450 ENSTTRP00000002628/1-941 ---MLFKKNL FEMAINLAKS QHLDSDGLAQ IFMQYGDHLY SKGNHDGAVQ ENSP00000475301/1-940 ---MLFKKNL FEMAINLAKS QHLDSDGLAQ IFMQYGDHLY SKGNHDGAVQ ENSBTAP00000007042/1-941 ---MLFKKNL FEMAINLAKS QHLDSDGLAQ IFMQYGDHLY SKGNHDGAVQ BACU017335/1-1008 SVRMLFKKNL FEMAINLAKS QHLDSDGLAQ IFMQYGDHLY SKGNHDGAVQ bmy_03251T0/1-878 ---MLFKKNL FEMAINLAKS QHLDSDGLAQ IFMQYGDHLY SKGNHDGAVQ 451 500 ENSTTRP00000002628/1-941 QYIRTIGKLE PSXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000475301/1-940 QYIRTIGKLE PSYVIRKFLD AQRIHNLTAY LQTLHRQSLA NADHTTLLLN ENSBTAP00000007042/1-941 QYIRTIGKLE PSYVIRKFLD AQRIHNLTAY LQTLHRQSLA NADHTTLLLN BACU017335/1-1008 QYIRTIGKLE PSYVIRKFLD AQRIHNLTAY LQTLHRQSLA NADHTTLLLN bmy_03251T0/1-878 QYIRTIGKLE PSYVIRKFLD AQRIHNLTAY LQTLHRQSLA NADHTTLLLN 501 550 ENSTTRP00000002628/1-941 XXXXXXXXXX XXXXXXTKSE SEVHFDVETA IKVLRQAGYY SHALYLAENH ENSP00000475301/1-940 CYTKLKDSSK LEEFIKKKSE SEVHFDVETA IKVLRQAGYY SHALYLAENH ENSBTAP00000007042/1-941 CYTKLKDSSK LEEFIKTKSE SEVHFDVETA IKVLRQAGYY SHALYLAENH BACU017335/1-1008 CYTKLKDSSK LEEFIKTKSE SEVHFDVETA IKVLRQAGYY SHALYLAENH bmy_03251T0/1-878 CYTKLKDSSK LEEFIKTKSE SEVHFDVETA IKVLRQAGYY SHALYLAENH 551 600 ENSTTRP00000002628/1-941 AHHEWYLKIQ LEDIKNYQEA LRYIGKLPFE QAESNMKRYG KILMHHIPEQ ENSP00000475301/1-940 AHHEWYLKIQ LEDIKNYQEA LRYIGKLPFE QAESNMKRYG KILMHHIPEQ ENSBTAP00000007042/1-941 AHHEWYLKIQ LEDIKNYQEA LRYIGKLPFE QAESNMKRYG KILMHHIPEQ BACU017335/1-1008 AHHEWYLKIQ LEDIKNYQEA LRYIGKLPFE QAESNMKRYG KILMHHIPEQ bmy_03251T0/1-878 AHHEWYLKIQ LEDIKNYQEA LRYIGKLPFE QAESNMKRYG KILMHHIPEQ 601 650 ENSTTRP00000002628/1-941 TTELLKGLCT DYRPSLEGRG DREAPGCRAN SEEFIPIFAN NPRELKAFLE ENSP00000475301/1-940 TTQLLKGLCT DYRPSLEGRS DREAPGCRAN SEEFIPIFAN NPRELKAFLE ENSBTAP00000007042/1-941 TTQLLKGLCT DYRPSLEGRG DREAPGCRAN SEEFIPIFAN NPRELKAFLE BACU017335/1-1008 TTELLKGLCT DYRPNLEGRG DREAPGCRAN SEEFIPIFAN NPRELKAFLE bmy_03251T0/1-878 TTELLKGLCT DYRPNLEGRG DREAPGCRAN SEEFIPIFAN NPRELKAFLE 651 700 ENSTTRP00000002628/1-941 HMSEVQPDSP QGIYDTLLEL RLQNWAHEEE PQVKEKLHAE AISLLKSGRF ENSP00000475301/1-940 HMSEVQPDSP QGIYDTLLEL RLQNWAHEKD PQVKEKLHAE AISLLKSGRF ENSBTAP00000007042/1-941 HMSEVQPDSP QGIYDTLLEL RLQNWAHEED PQVKEKLHAE AISLLKSGRF BACU017335/1-1008 HMSEVQPDSP QGIYDTLLEL RLQNWAHEEE PQVKEKLHAE AISLLKSGRF bmy_03251T0/1-878 HMSEVQPDSP QGIYDTLLEL RLQNWAHEEE PQVKEKLHAE AISLLKSGRF 701 750 ENSTTRP00000002628/1-941 CDVFDKALVL CQMHDFQDGV LYLYEQGKLF QQIMHYHMQH EQYRQVLAVC ENSP00000475301/1-940 CDVFDKALVL CQMHDFQDGV LYLYEQGKLF QQIMHYHMQH EQYRQVISVC ENSBTAP00000007042/1-941 CDVFDKALVL CQMHDFQDGV LYLYEQGKLF QQIMHYHMQH EQYRQVVAVC BACU017335/1-1008 CDVFDKALVL CQMHDFQDGV LYLYEQGKLF QQIMHYHMQH EQYRQVITVC bmy_03251T0/1-878 CDVFDKALVL CQMHDFQDGV LYLYEQGKLF QQIMHYHMQH EQYRQVITVC 751 800 ENSTTRP00000002628/1-941 ERHGEQEPSL WEQALSYFAR KEEDCKQYVA AVLKHIEGKN LMPPLL---- ENSP00000475301/1-940 ERHGEQDPSL WEQALSYFAR KEEDCKEYVA AVLKHIENKN LMPPLL---- ENSBTAP00000007042/1-941 ERHGEQEPSL WEQALSYFAR KEEDCKEYVA AVLKHIESKN LMPPLL---- BACU017335/1-1008 ERHGEQEPSL WEQALSYFAR KEEDCKEYVA AVLKHIESKN LMPPLLGTAE bmy_03251T0/1-878 ERHGEQEPSL WEQALSYFAR KEEDCKEYVA AVLKHIESKN LMPPLL---- 801 850 ENSTTRP00000002628/1-941 ---------- ---------- ---------- ---------V VQTLAHNSTA ENSP00000475301/1-940 ---------- ---------- ---------- ---------V VQTLAHNSTA ENSBTAP00000007042/1-941 ---------- ---------- ---------- ---------V VQTLAHNSTA BACU017335/1-1008 DGEGGWVQAA DSRARAGALQ FYPEGCLVHG LVSSRTPISV VQTLAHNSTA bmy_03251T0/1-878 ---------- ---------- ---------- ---------V VQTLAHNSTA 851 900 ENSTTRP00000002628/1-941 TLSVIRDYLV QKLQKQSQQI AQDELRVRRY REETTRIRQE IQELKASPKI ENSP00000475301/1-940 TLSVIRDYLV QKLQKQSQQI AQDELRVRRY REETTRIRQE IQELKASPKI ENSBTAP00000007042/1-941 TLSVIRDYLV QKLQKQSQQI AQDELRVRRY REETTRIRQE IQELKASPKI BACU017335/1-1008 TLSVIRDYLV QKLQKQSQQI AQDELRVRRY REETTRIRQE IQELKASPKI bmy_03251T0/1-878 TLSVIRDYLV QKLQKQSQQI AQDELRVRRY REETTRIRQE IQELKASPKI 901 950 ENSTTRP00000002628/1-941 FQKTKCSICN SALELPSVHF LCGHSFHQHC FESYSESDAD CPTCLPENRK ENSP00000475301/1-940 FQKTKCSICN SALELPSVHF LCGHSFHQHC FESYSESDAD CPTCLPENRK ENSBTAP00000007042/1-941 FQKTKCSICN SALELPSVHF LCGHSFHQHC FESYSESDAD CPTCLPENRK BACU017335/1-1008 FQKTKCSICN SALELPSVHF LCGHSFHQHC FESYSESDAD CPTCLPENRK bmy_03251T0/1-878 FQKTKCSICN SALELPSVHF LCGHSFHQHC FESYSESDAD CPTCLPENRK 951 1000 ENSTTRP00000002628/1-941 VMDMIRAQEQ KRDLHDQFQH QLKCSNDSFS VIADYFGRGV FNKLTLLTDP ENSP00000475301/1-940 VMDMIRAQEQ KRDLHDQFQH QLKCSNDSFS VIADYFGRGV FNKLTLLTDP ENSBTAP00000007042/1-941 VMDMIRAQEQ KRDLHDQFQH QLKCSNDSFS VIADYFGRGV FNKLTLLTDP BACU017335/1-1008 VMDMIRAQEQ KRDLHDQFQH QLKCSNDSFS VIADYFGRGV FNKLTLLTDP bmy_03251T0/1-878 VMDMIRAQEQ KRDLHDQFQH QLKCSNDSFS VIADYFGRGV FNKLTLLTDP 1001 1050 ENSTTRP00000002628/1-941 PTARLTASLE AGLQRDLLIH ARRGT ENSP00000475301/1-940 PTARLTSSLE AGLQRDLLMH SRRGT ENSBTAP00000007042/1-941 PTARLTASLE AGLQRDLLMH ARRGT BACU017335/1-1008 PTARLTASLE AGLQRDLLIH ARRGT bmy_03251T0/1-878 PTARLTASLE AGLQRDLLIH ARRGT