KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:29:49 2014 Check: 00 .. Name: ENSP00000330485/1-409 Len: 435 Check: 9106 Weight: 1.00 Name: ENSBTAP00000006547/1-429 Len: 435 Check: 1962 Weight: 1.00 Name: bmy_03444T0/1-435 Len: 435 Check: 5137 Weight: 1.00 Name: ENSTTRP00000000165/1-356 Len: 435 Check: 3777 Weight: 1.00 // 1 50 ENSP00000330485/1-409 MTQKGSMKPV KKKKTEEPEL EPLCCCEYID RNGEKNHVAT CLCDCQDLDE ENSBTAP00000006547/1-429 ------MKPV KKTKAEEPEL EPLCCCEYID RNGEKNHVAA CLCDCQDLDE bmy_03444T0/1-435 MTKKGSMKPG KKNKAEEPEL EPLCCCEYID RNGEKNHVAA CLCDCQDLDE ENSTTRP00000000165/1-356 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000330485/1-409 GCDRWITCKS LQPETCERIM DTISDRLRIP WLRGAKKVNI SIIPPLVLLP ENSBTAP00000006547/1-429 GCDRWITCKS VQPETCEKIM DTISDRLRIP WLRGAKKVNI SILPPLFLLP bmy_03444T0/1-435 GCDRWITCKS VQPETYERIM DTISDRLRIP WLRGARKVNI SLLPPLFLLP ENSTTRP00000000165/1-356 ----WITCKS VQPETYERIM DTISDRLRIH WLRGARKVNI SLLPPLFLLP 101 150 ENSP00000330485/1-409 VFLHVASWHF LLGVVVLTSL PVLALWYYYL THRRKEQTLF FLSLGLFSLG ENSBTAP00000006547/1-429 VFLRVASWHF LLGVVVLTSL PVLALWYYYL THRRKEQTLF FLSLGLFSLG bmy_03444T0/1-435 VFLRVASWHF LLGVVVLTSL PVLALWYYYL THRRKEQTLF FLSLGLFSLG ENSTTRP00000000165/1-356 VFLRVASWHF FLGVVVLTSL PVLALWYYYL THRRKEQTLF FLSLGLFSLG 151 200 ENSP00000330485/1-409 YMYYVFLQEV VPKGRVGPVQ LAVLTCGLFL ILLALHRAKK NPGYLSNPAS ENSBTAP00000006547/1-429 YMYYVFLQEV VPKGRVGPTR LALLTCGLLL ILFALYRAKK NPGYLRNPAH bmy_03444T0/1-435 YMYYVFLQEV VPRGRVGPTQ LALLTCGLLL ILLALCRAKK DPGYLRNPAN ENSTTRP00000000165/1-356 YMYYVFLQEV VPRGRVGPTQ LALLTCGLLL ILLALWRAKK DPGYLRNPAN 201 250 ENSP00000330485/1-409 GDRSLSSSQL ECLSRKGQEK TKGFPGADMS GSLNNRTTKD DPKGSSKMPA ENSBTAP00000006547/1-429 NDRALSGSQV ECLNRKGPEK PKGFPSADLS GGLNNRAPKD ETKDSPRTSA bmy_03444T0/1-435 GDRSLSGSHT EYLNRTGPEK PKGFPGADPA GGLNNRAPKD EPKGCPRTSA ENSTTRP00000000165/1-356 DDRSLSGSQT EYLNRTGPEK PKGFPGADPA GGLNNRGPKD EPKGCPGTLA 251 300 ENSP00000330485/1-409 GSPTKAKEDW CAKCQLVRPA RAWHCRICGI CVRRMDHHCV WINSCVGESN ENSBTAP00000006547/1-429 GSPAKGKDDW CAKCQLVRPA RAWHCRICGI CVRRMDHHCV WINSCVGESN bmy_03444T0/1-435 GSPATGKEDW CAKCRLVRPA RAWHCRICGV CVRRMDHHCV WINSCVGESN ENSTTRP00000000165/1-356 GSPATGKEDW CAKCRLVRPA RAWHCRICGV CVRRMDHHCV WINSCVGESN 301 350 ENSP00000330485/1-409 HQAFILALLI FLLTSVYGIT LTLDTICRDR SVFTALFYCP GVYANYSSAL ENSBTAP00000006547/1-429 HQAFILALLV FLLTSVYGIT LTLDTICTDR SVFTALFYCP GVYANYSSAL bmy_03444T0/1-435 HQAFMLALLI FLLTSVYGIT LTLDTICTDR SVFTALFYCP GVYANYSSAL ENSTTRP00000000165/1-356 HQAFMLALLV FLLTSVYGVT LTLDTICTDR SVFTALFYCP GVYANYSSAL 351 400 ENSP00000330485/1-409 SFTCVWYSVI ITAGMAYIFL IQLINISYNV TEREVQQALR QKTGRRLLCG ENSBTAP00000006547/1-429 CFTCVWYSVI ITGSMAYIFL IQLINISYNV TEREVQQALR QKTGRRLLCG bmy_03444T0/1-435 CFTCVWYSVI IVGGMAYIFL IQLINISYNV TEREVQQALR QKMGRRLLCG ENSTTRP00000000165/1-356 CFTCVWYSVI IMGGMAYIFL IQLINISYNV TEREVQQALR QKTGRRLLCG 401 450 ENSP00000330485/1-409 LIVDTG---- --LLG----- ---------- ----- ENSBTAP00000006547/1-429 LIVDTGQYNR GFLRNWHQFS TLGAHPFHHP AEDIV bmy_03444T0/1-435 LIVDTGQYNR GFLRNWHQFS TLGTHPFHHP AEDIV ENSTTRP00000000165/1-356 LIVDTG---- --LPGW---- ---------- -----