KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:29:14 2014 Check: 00 .. Name: ENSP00000438378/1-1583 Len: 1588 Check: 3405 Weight: 1.00 Name: ENSBTAP00000006354/1-835 Len: 1588 Check: 6566 Weight: 1.00 Name: ENSTTRP00000011038/1-1133 Len: 1588 Check: 2674 Weight: 1.00 Name: bmy_14274T0/1-765 Len: 1588 Check: 2789 Weight: 1.00 Name: BACU010004/1-1475 Len: 1588 Check: 475 Weight: 1.00 // 1 50 ENSP00000438378/1-1583 MAGPGGWRDR EVTDLGHLPD PTGIFSLDKT IGLGTYGRIY LGLHEKTGAF ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 MAGPGGWRDK EVTDLGHLPD PTGIFSLDKT IGLGTYGRIY LGLHEKTGAL bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000438378/1-1583 TAVKVMNARK TPLPEIGRRV RVNKYQKSVG WRYSDEEEDL RTELNLLRKY ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 TAVKVMNARK TPLPEIGRRV RVNKYQKSVG WRYSDEEEDL RTELNLLKKY bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 -----MNARK TPLPEIGRRV RVNKYQKSVG WRYSDEEEDL RTELNLLKKY 101 150 ENSP00000438378/1-1583 SFHKNIVSFY GAFFKLSPPG QRHQLWMVME LCAAGSVTDV VRMTSNQSLK ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 SFHKNIVSFY GAFFKLSPPG QRHQLWXXXX XXXXXXXXXX XXXXXXXXXX bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 SFHKNIVSFY GAFFKLSPPG QRHQLWMVME LCAAGSVTDV VRMTRNQSLK 151 200 ENSP00000438378/1-1583 EDWIAYICRE ILQGLAHLHA HRVIHRDIKG QNVLLTHNAE VKLVDFGVSA ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 XXXXXXXXXX XXXGLAHLHA HRVIHRDIKG QNVLLTHNAE VKLVDFGVSA bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 EDWIAYICRE ILQGLAHLHA HRVIHRDIKG QNVLLTHNAE VKLVDFGVSA 201 250 ENSP00000438378/1-1583 QVSRTNGRRN SFIGTPYWMA PEVIDCDEDP RRSYDYRSDV WSVGITAIEM ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 QVSRTNG-RN SFIGTPYWMA PEVIDCDEDP RRSYDYRXXX XXXXXXXXXX bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 QVSRTNGRRN SFIGTPYWMA PEVIDCDEDP RRSYDYRSDV WSVGITAIEM 251 300 ENSP00000438378/1-1583 AEGAPPLCNL QPLEALFVIL RESAPTVKSS GWSRKFHNFM EKCTIKNFLF ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 XXXXXXLCNL QPLEALFVIL RESAPKVKSS GWSRKFHNFM EKCMIKNFLF bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---MIQN--- BACU010004/1-1475 AEGAPPLCNL QPLEALFVIL RESAPKVKSS GWSRKFHNFM EKCMIKNFLF 301 350 ENSP00000438378/1-1583 RPTSANMLQH PFVRDIKNER HVVESLTRHL TGIIKKRQKK KGIPLIFERE ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 RPTSANMLHH PFVRNIKNEG HVVESLKKHL TGIIKKRQ-K ---------- bmy_14274T0/1-765 ---STKVLHC IF-------- ---------- ---------- ---------- BACU010004/1-1475 RPTSANMLHH PFVRNIKNEG HVVESLKKHL TGIIKKRQ-K KGIPLIFERE 351 400 ENSP00000438378/1-1583 EAIKEQYTVR RFRGPSCTHE LLRLPTSSRC RPLRVLHGEP SQPRWLPDRE ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 EAIKEQYTMR RFRGPSCTHE LLRLPTSSRC RPLRVLHGEP SQPRWLPDRE 401 450 ENSP00000438378/1-1583 EPQVQALQQL QGAARVFMPL QALDSAPKPL KGQAQAPQRL QGAARVFMPL ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 EPQVQALQHL QGAARVFMPL QAHDSAPRPL QGQAQAPQRL QGAARVFMPL 451 500 ENSP00000438378/1-1583 QAQVKAKASK PLQMQIKAPP RLRRAARVLM PLQAQVRAPR LLQVQSQVSK ENSBTAP00000006354/1-835 ---------- ---------- ---------- --------XR PQQVQTQVSK ENSTTRP00000011038/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 QAQVKAKASR PLQMQMKAPP RLRRTAWMLM PLQTQVKAPR PLQVEAQVPK 501 550 ENSP00000438378/1-1583 KQQAQTQ--- TSEPQDLDQV PEEFQGQDQV PE-QQRQGQA PEQQQRHNQV ENSBTAP00000006354/1-835 KQQAQGQPQA SGEPQDLDQV PEEFQRQDQV PEQQQRHGRV PEQQQRQNHI ENSTTRP00000011038/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 EQQDQAQPQA SGEPQDLDQV PEEFQGQDQV PEQQQRQGQV PEQQQRQNQV 551 600 ENSP00000438378/1-1583 PEQELEQNQA PEQPEVQEQA AEPAQAETEA EEPESLRVNA QVFLPLLSQD ENSBTAP00000006354/1-835 PEQPLQQNGA PEQPEVQEQA AEPTQAEMEA EEPESLRVHA QVFLPLLSQN ENSTTRP00000011038/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 PEQQLEQNRA PEQPEVQEQA AEPTQAETEA EEPESLRVHA QVFLPLLSQN 601 650 ENSP00000438378/1-1583 HHVLLPLHLD TQVLIPVEGQ TEGSPQAQAW TLEPPQAIGS VQALIEGLSR ENSBTAP00000006354/1-835 HHVLLPLHLD TQVLVPVEGQ TEGSPQAQAW ALDPTQAVGS VQALIEGLSR ENSTTRP00000011038/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 HHVLLPLHLD TQVLIPVEGQ NERSPQAQAW ALEPTQAVGS VQALIEGLSR 651 700 ENSP00000438378/1-1583 DLLRAPNSNN SKPLGPLQTL MENLSSNRFY SQPEQAREKK SKVSTLRQAL ENSBTAP00000006354/1-835 DLLRAPNAHN SKPLGPLQIL MENLASDVFY SQPEQARKKK SKVSSLRQAL ENSTTRP00000011038/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 DLLRAPNSHN SKPLGLLQTL MENLSSDVFY SQPEQARKKK SKVSSLRQAL 701 750 ENSP00000438378/1-1583 AKRLSPKRFR AKSSWRPEKL ELSDLEARRQ RRQRRWEDIF NQHEEELRQV ENSBTAP00000006354/1-835 AKRLSPKRFR AKLSRRPEAF ELSDLEAHRQ RRQCRWEDIF NQQEEELRQV ENSTTRP00000011038/1-1133 ---------- ---------- ---------- ---------- ---------- bmy_14274T0/1-765 ---------- ---------- ---------- ---------- ---------- BACU010004/1-1475 AKRLSPKRFR AKLSRRPEEY ELSDLEAHRQ RRQRRWEDIF NQHEEELRQV 751 800 ENSP00000438378/1-1583 DKDKEDESSD NDEVFHSIQA EVQIEPLKPY ISNPKKIEVQ ERSPSVPNNQ ENSBTAP00000006354/1-835 ANDKEDESSD NDEAFHSIQA EVQIEPLQPY IPEPKENEVQ ERSASMPHNK ENSTTRP00000011038/1-1133 ---------- ---------- ---------- -------KVQ ERSISMPYNQ bmy_14274T0/1-765 ---------- ---------- ---------- -------KIQ ERSISIPYNQ BACU010004/1-1475 ANEKEDESSD NDEVFHSIQA EVQIEPLQPY IPNPKENEIQ ERSISIPYNQ 801 850 ENSP00000438378/1-1583 DHAHHVKFSS SVPQRSLLEQ AQKPIDIRQR SSQNRQNWLA ASESSSEEES ENSBTAP00000006354/1-835 DRVHRVKFSS SVPQRSVLEQ AQKPIDIRQR SSQNPQNCPA ASESSSEEAS ENSTTRP00000011038/1-1133 DRVHRVKFSS SVPQRSLLEQ AQKPIDMRQR SSQNPQNCPA ASESSSEES- bmy_14274T0/1-765 DRVHRVKFSS SVPQRSLLEQ AQKPIDIRQR SSQNPQNCPA ASESSSEEES BACU010004/1-1475 DRVHRVKFSS SVPQRSLLEQ AQKPIDIRQR SSQNPQNCPA ASESSSEEES 851 900 ENSP00000438378/1-1583 PVTGRRSQSS PPYSTIDQKL LVDIHVPDGF KVGKISPPVY LTNEWVGYNA ENSBTAP00000006354/1-835 PVIRRRSQSS PPYSTIDQSL LVDIHVPDGF KVGKISPPVY LTNEWVGYNA ENSTTRP00000011038/1-1133 PVT-RRSQSS PPYST--DKV LMN-HVPDGF KVGKISPPVY LTNEWVGYNA bmy_14274T0/1-765 PVTRRRSQSS PPYSTIDQRL LVDIHVPDGF KVGKISPPVY LTNEWVGYNA BACU010004/1-1475 PVTRRRSQSS PPYSTIDQRL LVDIHVPDGF KVGKISPPGY LTNEWVGYNA 901 950 ENSP00000438378/1-1583 LSEIFRNDWL TPAPVIQPPE EDGDYVELYD ASADTDGDDD DESNDTFEDT ENSBTAP00000006354/1-835 LSEIFRNDWL TPAPVVQPPE EDGDYVELYD AGADTDGDDD --SNDAYEDS ENSTTRP00000011038/1-1133 LSEIFRNDWL TPAPVIQPPE EDGDYVELYD AGADTDGDDD D-SNDAYEDT bmy_14274T0/1-765 LSEIFRNDWL TPAPVIQPPE EDGDYVELYD AGADTDGDDD D-SNDAYEDT BACU010004/1-1475 LSEIFRNDWL TPAPVIQPPE EDGDYVELYD AGADTDGDDD D-SNDAYEDT 951 1000 ENSP00000438378/1-1583 YDHANGNDDL DNQVDQANDV CKDH-DDDNN KFVDDVNNNY YEAPSCPRAS ENSBTAP00000006354/1-835 YDHDNGSDEL NDQLDQANDV GEDHYDDDND EVIDDKGNNP DDASSWPRPS ENSTTRP00000011038/1-1133 YDHDNGCDEL DNQVDQANDA GEDQDDDDND EVVDDKGNSR DDAPSWPRPS bmy_14274T0/1-765 YDHDNGCDEL DNQVDQANDA GEDQDDDDND EVVDDKGNNR DDAPSWPRPS BACU010004/1-1475 YDHDNGCDEL DNQVDQANDA GEDQDDDDND DDVDDKGNNR DDAPSWPRPS 1001 1050 ENSP00000438378/1-1583 YGRDGSCKQD GYDGSRGKEE AYRGYGSHTA NRSHGGSAAS EDNAAIGDQE ENSBTAP00000006354/1-835 CGRGRSYKQD GKDGSDRGEG SFSSYGSQRV NRSHGGSAAS GDSAAIGDHE ENSTTRP00000011038/1-1133 CGRGGSYKQD GKDGSDGGEG TFSSNGSQRA SRSHGGSTAI RGSEAIGDHE bmy_14274T0/1-765 CGRGGSYKQD GKDGSDGGEG TFSSNGSQRA SRSHGGSTAI GGSVAIGDHE BACU010004/1-1475 CGRGGSYKQD GKDGSDRGEG TFGSNGSQRA SRSHGESTAI GGSAAIGDHE 1051 1100 ENSP00000438378/1-1583 EHAANIGSER RGSEGDGGKG VVRTSEESGA LGLNGEENCS ETDGPGLKRP ENSBTAP00000006354/1-835 EHTANVGSGR RGKESNGNEG VSGTNEESEA QELNGGENCS ETDDPILERP ENSTTRP00000011038/1-1133 GHRANTGSGR RGKESNGNEG ISGTNEESEA LELNGEENCS EIHDPVLERP bmy_14274T0/1-765 GHRANTGSGR XCKDGNGNEG VSGTNEESEA LELNGEENCS EIDDPVLERP BACU010004/1-1475 GHRANTDSGR RRKEGNGNEG VSGTNEESEA LELNGEENCS EIDDPVLERP 1101 1150 ENSP00000438378/1-1583 ASQDFEYLQE EPGGGNEASN AIDSGAAPSA PDHESDNKDI SESSTQSDFS ENSBTAP00000006354/1-835 VFQEFEHQLE ESGGRSEASN AIAPGAAPAV PDAENDTVDI SEVSTESGFS ENSTTRP00000011038/1-1133 ASQEFEHKPE ELGGRSEASN AVASGAAPAA PGDENDTVDI SEVSTESGFS bmy_14274T0/1-765 VSQEFEHKPE ESGGRSEASN AVASGAAPAA PGDENDAMDI SEVSTESGFS BACU010004/1-1475 VSQEFEHKPE ESGGRSEASN AFASGAAPAA PGDENDTMDI SEVSTESGFS 1151 1200 ENSP00000438378/1-1583 ANHSSPSKGS GMSADANFAS AILYAGFVEV PEESPKQPSE VNVNPLYVSP ENSBTAP00000006354/1-835 ANHSSPSNDS ERTANADFAS AILYAGLVEV PEKSSKRPSD VNVNPLYVSY ENSTTRP00000011038/1-1133 ASHSSPSKGS EGAANADFAS TILYAGLVEV PEKSSKQPSE VNVNPLYVSP bmy_14274T0/1-765 ASHSSPSNGS EGAANADFAS AILHAGLVEV PEKSSKQPSE VNVNPLYVSP BACU010004/1-1475 ASHSSPSNGS EGAANADFAS AILYAGLVEV PEKSSKQPSE VNVNPLYVSP 1201 1250 ENSP00000438378/1-1583 ACKKPLIHMY EKEFTSEICC GSLWGVNLLL GTRSNLYLMD RSGKADITKL ENSBTAP00000006354/1-835 ECKKPLIHMY EKEFTSEICC GSLWGVNLLL GTRSNLYLMD RSGKADITKL ENSTTRP00000011038/1-1133 ECKKPLIHMY EKEFTSEICC GSLWGVNLLL GTRSNLYLMD RSGKADITKL bmy_14274T0/1-765 ECKKPLIHMY EKEFTSEICC GSLWGVNLLL GTRSNLYLMD RSGKADITKL BACU010004/1-1475 ECKQPLIHMY EKEFTSEICC GSLWGVNLLL GTRSNLYLMD RSGKADITKL 1251 1300 ENSP00000438378/1-1583 IRRRPFRQIQ VLEPLNLLIT ISGHKNRLRV YHLTWLRNKI LNNDPESKRR ENSBTAP00000006354/1-835 IKRRPFRQIQ VVEPLNLLIT ISGRKNRLRV YHLTWLRNKI LNDDPESKRR ENSTTRP00000011038/1-1133 IKRRPFRQIQ VVEPLNLLIT ISGHKNRLRV YHLTWLRNKI LNDDPESKRR bmy_14274T0/1-765 IKRRPFRQIQ VVEPLNLLIT ISGHKNRLRV YHLTWLRNKI LNDDPESKRR BACU010004/1-1475 IKRRPFRQIQ VVEPLNLLIT ISGHKNRLRV YHLTWLRNKI LNDDPESKRR 1301 1350 ENSP00000438378/1-1583 QEEMLKTEEA CKAIDKLTGC EHFSVLQHEE TTYIAIALKS SIHLYAWAPK ENSBTAP00000006354/1-835 QEEMLKTEEA CKSIDKLTGC EHFSV----- ---------- ---------- ENSTTRP00000011038/1-1133 QEEMLKTEEA CKAIDKLTGC EHFSVLQHEE TTYIAIALKS SIHLYAWAPK bmy_14274T0/1-765 QEEMLKTEEA CKAIDKLTGC EHFSVLQHEE TTYIAIALKS SIHLYAWAPK BACU010004/1-1475 QEEMLKTEEA CKAIDKLTGC EHFSVLQHEE TTYIAIALKS SIHLYAWAPK 1351 1400 ENSP00000438378/1-1583 SFDESTAIKV CIDQSADSEG DYMSYQAYIR ILAKIQAADP VNRFKRPDEL ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 SFDESTAIKV CIDQSADSEG DYMSYEAYIR ILAKIQAADP ANRFKRPDEL bmy_14274T0/1-765 SFDESTAI-- ---------- ---------- ---------- ---------- BACU010004/1-1475 SFDESTAI-- ---------- ---------- ---------- ---------- 1401 1450 ENSP00000438378/1-1583 LHLLKLKVFP TLDHKPVTVD LAIGSEKRLK IFFSSADGYH LIDAESEVMS ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 LHLLKLKVFP TLGHKPVTVD LAIGSEKRLK IFFSSADGYH IIDAESEVMS bmy_14274T0/1-765 ------KVFP TLGHKPVTVD LAIGSEKRLK IFFSSADGYH IIDAESEVIS BACU010004/1-1475 ------KVFP TLGHKPVTVD LAIGSEKRLK IFFSSADGYH IIDAESEVMS 1451 1500 ENSP00000438378/1-1583 DVTLPKNPLE IIIPQNIIIL PDCLGIGMML TFNAEALSVE ANEQLFKKIL ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 DVTLPNNPLE IIIPQNIIIL PDSLGIGMML TFNAEALSME ANEQLFKKIL bmy_14274T0/1-765 DVTLPNNPLE IIIPQNIIIL PDSLGIGMML TFNAEALSME ANEQLFKKIL BACU010004/1-1475 DVTLPNN--- -----NIIIL PDSLGIGMML TFNAEALSME ANEQLFKKIL 1501 1550 ENSP00000438378/1-1583 EMWKDIPSSI AFECTQRTTG WGQKAIEVRS LQSRVLESEL KRRSIKKLRF ENSBTAP00000006354/1-835 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000011038/1-1133 EVWKDIPSSV AYECSQRATG WGQKAIEVRS LQSRVLESEL KRRSIKKLRF bmy_14274T0/1-765 EVWKDIPSSV AYECSQRATG WGQKAIEVRS LQSRVLESEL KRRSIKKLRF BACU010004/1-1475 EVWKDIPSSV AYECSQRATG WGQKAIEVRS LQSRVLESEL KSRSIKKLRF 1551 1600 ENSP00000438378/1-1583 LCTRGDKLFF TSTLRNHHSR VYFMTLGKLE ELQSNYDV ENSBTAP00000006354/1-835 ---------- ---------- ---------- -------- ENSTTRP00000011038/1-1133 LCTRGDKLFF TSILRNRHSR VYFMTLGKLE ELQSTYGV bmy_14274T0/1-765 LCTRGDKLFF TSILRNRHSR VYFMTLGKLE ELQSNYGV BACU010004/1-1475 LCTRGDKLFF TSILRNRHSR VYFMTLGKLE ELQSNYGV