KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:35 2014 Check: 00 .. Name: ENSP00000365686/1-708 Len: 723 Check: 2943 Weight: 1.00 Name: ENSTTRP00000003148/1-705 Len: 723 Check: 5773 Weight: 1.00 Name: ENSBTAP00000005822/1-705 Len: 723 Check: 8226 Weight: 1.00 Name: BACU017454/1-627 Len: 723 Check: 980 Weight: 1.00 Name: bmy_21496T0/1-672 Len: 723 Check: 8813 Weight: 1.00 // 1 50 ENSP00000365686/1-708 ---------- ----MGMSKS HSFFGYPLSI FFIVVNEFCE RFSYYGMRAI ENSTTRP00000003148/1-705 ---------- ----MGTFSR PSCFGYPVSI FFIVINEFCE RFSYYGMRAI ENSBTAP00000005822/1-705 ---------- ------MSVP KSCFGYPLSI FFIVVNEFCE RFSYYGMRAL BACU017454/1-627 ---------- ---------- -NCFGYPLSI FFIVINEFCE RFSYYGMRAI bmy_21496T0/1-672 LVGEYGPARS LFQTQTVSLC QNCFGYPLSI FFIVINEFCE RFSYYGMRGS 51 100 ENSP00000365686/1-708 LILYFTNFIS WDDNLSTAIY HTFVALCYLT PILGALIADS WLGKF-KTIV ENSTTRP00000003148/1-705 LILYFQSFLH WNDNLSTAIY HTFVALCYLT PILGALIADS WLGKF-KTIV ENSBTAP00000005822/1-705 LILYFQRFLG WNDNLGTAIY HTFVALCYLT PILGALIADS WLGKF-KTIV BACU017454/1-627 LILYFQRFLG WNDNLGTAIY HTFVALCYMT PVLGALIADS WLGKF-KTIV bmy_21496T0/1-672 RSQNFAQCLH AEDR------ ---------- -----ILQQA ALQRFIRTIV 101 150 ENSP00000365686/1-708 SLSIVYTIGQ AVTSVSSIND LTDHNHDGTP DSLPVHVVLS LIGLALIALG ENSTTRP00000003148/1-705 SLSIVYTIGQ VVIAVSSIND LVDFNHDGNP DNISVHVALS MVGLALIALG ENSBTAP00000005822/1-705 SLSIVYTIGQ VVIAVSSIND LTDFNHDGTP DSISVHVALS MIGLVLIALG BACU017454/1-627 SLSIVYTIGQ VVIAVSSIND LTDFNHDGIP DNISVHVRL- IYAFSPLILG bmy_21496T0/1-672 SLSIVYTIGQ AVIAVSSIND LTDFNHDGTP DNISVHVALS MVGLALIALG 151 200 ENSP00000365686/1-708 TGGIKPCVSA FGGDQFEEGQ EKQRNRFFSI FYLAINAGSL LSTIITPMLR ENSTTRP00000003148/1-705 TGGIKPCVSA FGGDQFEKGQ EKQRNRFFSI FYLAINAGSL LSTIITPMLR ENSBTAP00000005822/1-705 TGGIKPCVSA FGGDQFEEGQ EKQRNRFFSI FYLAINAGSL LSTIITPMLR BACU017454/1-627 K--------- ------EIG- ------FQKL WFYA------ ---------- bmy_21496T0/1-672 TGGIKPCVSA FGGDQFEKGQ EKQRNRFFSI FYLAINAGSL LSTIITPMLR 201 250 ENSP00000365686/1-708 VQQCGIHSKQ ACYPLAFGVP AALMAVALIV FVLGSGMYKK FKPQGNIMGK ENSTTRP00000003148/1-705 VQECGIHSKK ACYPLAFGVP AALMAVSLIV FVIGSGMYKK VQPQGNVMAK ENSBTAP00000005822/1-705 VQVCGIHSKQ ACYPLAFGVP AALMAVSLIV FVIGSGMYKK VQPQGNIMSK BACU017454/1-627 ---------R CCVKLAS--- --------VV FVIGSGMYKN VQPQGNVMAK bmy_21496T0/1-672 VQXCGIHSKQ SCYPLAFGVP AALMAVSLIV FVIGSGMYKN VQPQGNVMAK 251 300 ENSP00000365686/1-708 VAKCIGFAIK NRFRHRSKAF PKREHWLDWA KEKYDERLIS QIKMVTRVMF ENSTTRP00000003148/1-705 VARCIGFAIK NRVRHRSKKF PKREHWLDWA NEKYDEQLIS QIKMVTRVMF ENSBTAP00000005822/1-705 VARCIGFAIK NRIRHRSKKF PKREHWLDWA SEKYDERLIS QIKMVTRVMF BACU017454/1-627 VASCVGFAIK NRIRHRSKRF PKREHWLDWA TEKYDERLIS QIKMVTRVMF bmy_21496T0/1-672 VASCVGFAIK NRVRHRSKRF PKREHWLDWA TEKYD----- ---------- 301 350 ENSP00000365686/1-708 LYIPLPMFWA LFDQQGSRWT LQATTMSGKI GALEIQPDQM QTVNAILIVI ENSTTRP00000003148/1-705 LYIPLPMFWA LFDQQGSRWT LQATTMNGKI GIIEIQPDQM QTVNAILIVI ENSBTAP00000005822/1-705 LYIPLPMFWA LFDQQGSRWT LQATTMSGKI GIIEIQPDQM QTVNAILIVI BACU017454/1-627 LYIPLPMFWA LFDQQ----- ---------- GIMEIQPDQM QTVNAILIVI bmy_21496T0/1-672 ---------- -----GSRWT LQATTMSGKI GIMEIQPDQM QTVNAILIVI 351 400 ENSP00000365686/1-708 MVPIFDAVLY PLIAKCGFNF TSLKKMAVGM VLASMAFVVA AIVQVEIDKT ENSTTRP00000003148/1-705 LVPIMDAVVY PLIAKCGFNF TSLKKMTVGM FLASMAFVAA AIVQVEIEKT ENSBTAP00000005822/1-705 MVPIVDAVVY PLIAKCGLNF TSLKKMTVGM FLASMAFVAA AIVQVEIDKT BACU017454/1-627 LVPIMDAVVY PLIAKCGFNF TSLKRMVVGM LLASMAFVAA AIVQVEIEKT bmy_21496T0/1-672 LVPIMDAVVY PLIAKCGFNF TSLKKMIVGM FLASMAFVAA AIVQVEIEKT 401 450 ENSP00000365686/1-708 LPVFPKGNEV QIKVLNIGNN TMNISLPGEM VTLGPMSQTN AFMTFDVNKL ENSTTRP00000003148/1-705 LPVFPKGNEV QIKVLNIGND SMNIYFPGKT EILNPMHQTS DFMTFSADKL ENSBTAP00000005822/1-705 LPVFPKGNEV QIKVLNIGDS NMTVSFPGTT ETYNQMSQPK DFMTFNVDNL BACU017454/1-627 LPVFPKGNEV QIKVLNIGND IMTISFPGTT VTVNQTSPKS EFMTFNADKL bmy_21496T0/1-672 LPVFPKGNEV QIKVLNIGND NMTVSFPGTT VTVGQMSPTS EFMTFNVDEL 451 500 ENSP00000365686/1-708 TRINISSPGS PVTAVTDDFK QGQRHTLLVW APNHYQVVKD GLNQKPEKGE ENSTTRP00000003148/1-705 TSINISSTAS PPTPV--DFE QGHRH-LLVW APNKYQVVKD GLNQKPENGK ENSBTAP00000005822/1-705 S-INISSTGS PVTPVTYNFE SGHRHTLLVW APSNYQVVKD GLNQKPEKGR BACU017454/1-627 TSIYISSTGS PVTLVTHNFE QGHRHTLLVW GPNNYQVVKD GLNQKPEKGQ bmy_21496T0/1-672 SGINISSTGS PVTSVTHNFE QGHRHTLLVW APDHYQVVKD GLNQKPEEGK 501 550 ENSP00000365686/1-708 NGIRFVNTFN ELITITMSGK VYANISSYNA STYQFFPSGI KGFTISSTEI ENSTTRP00000003148/1-705 NGIRFVNTLA ESFSVTMGEE IYENVTSHNA SEYHFFSSGR KSFTINSSEI ENSBTAP00000005822/1-705 NGIRFVNAFG ESFNVTMDGE VYNNVSSHNA SEYLFFSSGV KSFTINSPEI BACU017454/1-627 NGIRFVNALA ESFNVTVDEQ LYENVTSHNA SEYHFFSSGE KSFTINSSEI bmy_21496T0/1-672 NGIRFVNTLA ESFSVTMDGQ LYENVTSHNA SEYHFFSSGK KSFTINSSEI 551 600 ENSP00000365686/1-708 PPQCQPNFNT FYLEFGSAYT YIVQRKNDSC PEVKVFEDIS ANTVNMALQI ENSTTRP00000003148/1-705 AQHCGNEFET SYLGFGSAYT YVITRKDNGC LEPIVVEDIS PNTVSMALQI ENSBTAP00000005822/1-705 SQPCGKEFKT PYLGFGSAFT YVITRKSDGC PEAKAFEDIS PNTVSMALQI BACU017454/1-627 LQHCENKFKT SYLEFGSAYT YVITRKDNSC PTPMIFEDIA PNTVSMALQI bmy_21496T0/1-672 LQHCENEFKT SYLEFGSAYT YVITRKNNSC PEPMEFEDIA PNTISMALQI 601 650 ENSP00000365686/1-708 PQYFLLTCGE VVFSVTGLEF SYSQAPSNMK SVLQAGWLLT VAVGNIIVLI ENSTTRP00000003148/1-705 PQYFLLTCGE VVFSVTGLEF SYSQAPSNMK SVLQAGWLLT VAAGNFIVLI ENSBTAP00000005822/1-705 PQYFLLTCGE VVFSVTGLEF SYSQAPSNMK SVLQAGWLLT VAVGNIIVLI BACU017454/1-627 PQYFLLTCGE VVFSVTGLEF SYSQAPSNMK SVLQAGWLLT VAFGNFIVLI bmy_21496T0/1-672 PQYFLLTCGE VVFSVTGLEF SYSQAPSNMK SVLQAGWLLT VAVGNFIVLI 651 700 ENSP00000365686/1-708 VAGAGQFSKQ WAEYILFAAL LLVVCVIFAI MARFYTYINP AEIEAQFDED ENSTTRP00000003148/1-705 VAGAGSFSEQ WAEYVLFAGL LLVVSVIFAI MARFYTYVSP AEIEAQFDMD ENSBTAP00000005822/1-705 VAGAGQFSEQ WAEYVLFAAL LLVVCVIFAI MARFYTYINP AEVEAQFDKD BACU017454/1-627 VAGAGPFSEQ WAEYVLFAAL LLVVCIIFAI MARFYTYVNP AEIDAQFDTD bmy_21496T0/1-672 VAGAGSFSEQ WAEYVLFAAL LLVVCIIFAI MARFYTYVNP AEIEAQFDTD 701 750 ENSP00000365686/1-708 EKKNRLEKSN PYFMSGANSQ KQM ENSTTRP00000003148/1-705 EKKKYPEESN PYPKLDSDLQ TQL ENSBTAP00000005822/1-705 DKEDYLEKSN PYAKLDSVSQ TQM BACU017454/1-627 EKKKYLEQSN PHPKLDPISQ TQI bmy_21496T0/1-672 EKKKYLEQSN PHPKLDPILQ TQM