KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:13 2014 Check: 00 .. Name: ENSP00000230588/1-746 Len: 756 Check: 8597 Weight: 1.00 Name: ENSBTAP00000005686/1-752 Len: 756 Check: 3888 Weight: 1.00 Name: ENSTTRP00000008007/1-748 Len: 756 Check: 9966 Weight: 1.00 Name: bmy_00010T0/1-664 Len: 756 Check: 526 Weight: 1.00 Name: BACU015834/1-752 Len: 756 Check: 2086 Weight: 1.00 // 1 50 ENSP00000230588/1-746 MAWIRSTCIL FFTLLFAHIA AVPIKYLPEE NVHDADFGEQ KDISEIN--- ENSBTAP00000005686/1-752 MIWTRLACII PFILFFAHIA AVSINHLSKG NVYDGDFDEQ KDISEINLDP ENSTTRP00000008007/1-748 MIWTRSACIL SFILFFAHIA AVSIKHLSKG NVHDGEFDEQ KAISEIN--- bmy_00010T0/1-664 MIWTRSACIL SFILFFAHIA AVSIKHLSKG NVHDGEFDEQ KDISEIN--- BACU015834/1-752 MIWTRPACIL SFILFFAHIA AVSIKHLSKG NVHDGEFDEQ KDISEIN--- 51 100 ENSP00000230588/1-746 -LAAGLDLFQ GDILLQKSRN GLRDPNTRWT FPIPYILADN LGLNAKGAIL ENSBTAP00000005686/1-752 HLAAGLDLFE GDILLQNSRN GLRDPSSRWK FPIPYILADN LALNAKGAIL ENSTTRP00000008007/1-748 -LAAGLDLFQ GDIFLQNSRN GLRDPSARWK FPIPYILADN LALNAKGAIL bmy_00010T0/1-664 -LAAGLDLFQ GDIFLPNSRN GLRDPNTRWK FPIPYILADS LALNAKGAIL BACU015834/1-752 -LAAGLDLFQ GDIFLPNSRN GLRDPNTRWK FPIPYILADS LALNAKGAIL 101 150 ENSP00000230588/1-746 YAFEMFRLKS CVDFKPYEGE SSYIIFQQFD GCWSEVGDQH VGQNISIGQG ENSBTAP00000005686/1-752 YAFEMFRLKS CVDFKPYEGE SSYIIFQEFS GCWSEVGDQH VGQNLSIGQG ENSTTRP00000008007/1-748 YAFEMFRLKS CVDFKPYEGE SSYIIFQQFD GCWSEVGDRH VGQNLSIGQG bmy_00010T0/1-664 YAFEMFRLKS CVDFKPYEGE SSYIIFQKFN GCWSEVGNRH VGQNLSIGQG BACU015834/1-752 YAFEMFRLKS CVDFKPYEGE SSYIIFQKFD GCWSEVGNRH VGQNLSIGQG 151 200 ENSP00000230588/1-746 CAYKAIIEHE ILHALGFYHE QSRTDRDDYV NIWWDQILSG YQHNFDTYDD ENSBTAP00000005686/1-752 CDYKAIVEHE ILHALGFYHE QSRTDRDDYV NIWWDEILPG YQHNFNTYDD ENSTTRP00000008007/1-748 CDYKAIIEHE ILHALGFYHE QSRTDRDDYV KIWWDEILPG YQHNFNTYDD bmy_00010T0/1-664 CDYKAIIEHE ILHALGFYHE QSRMDRDDYV NIWWDEILPG YQHNFNIYDD BACU015834/1-752 CDYKAIIEHE ILHALGFYHE QSRTDRDDYV NIWWDEILPG YKHNFNTYDD 201 250 ENSP00000230588/1-746 SLITDLNTPY DYESLMHYQP FSFNKNASVP TITAKIPEFN SIIGQRLDFS ENSBTAP00000005686/1-752 NFITDLNTPY DYESLMHYRP LSFNKNDSIP TITAKIPEFN SIIGQRVDFS ENSTTRP00000008007/1-748 NFITDLNTPY DYESLMHYEP LSFNKNASVP TITAKIPEFN SIIGQRLDFS bmy_00010T0/1-664 KIVTDLNTPY DYESLMHYEP FSFNKSASVP TITAKIPEFN SIIGQRLDFS BACU015834/1-752 SVVTDLNTPY DYESLMHYEP FSFNKNASLP TITAKIPEFN SIIGQRLDFS 251 300 ENSP00000230588/1-746 AIDLERLNRM YNCTTTHTLL DHCTFEKANI CGMIQGTRDD TDWAHQDSAQ ENSBTAP00000005686/1-752 AIDLERLNRM YNCTTTHTFL DHCDFEKANI CGMIQGTRDD TDWVHENNAQ ENSTTRP00000008007/1-748 DIDLERLNRM YNCTTTHTLL DHCDFEKANI CGMIQSTRDT ADWVHGDSTQ bmy_00010T0/1-664 AIDLERLNRM YNCTTTHTLL DHCDFEKANI CGMIQSTRND ADWVHEDSTQ BACU015834/1-752 AIDLERLNRM YNCTTTHTLL DHCDFEKANI CGMIQSTGND AGWVYEDSTK 301 350 ENSP00000230588/1-746 AGEVDHTLLG QCTGAGYFMQ FSTSSGSAEE AALLESRILY PKRKQQCLQF ENSBTAP00000005686/1-752 PGQADHTLAG QCTGAGYFMY LNTSFGAAED AAMLESRILY PKRKQQCLQF ENSTTRP00000008007/1-748 PGQADHTLEG RCTGAGYFMY FSTSLGIAEE AALLESRILY PKRKQQCLQF bmy_00010T0/1-664 PGQADHTLVG QCTGAGYFMY FNTSLGIAEE AALLESRILY PKRKQQCLQF BACU015834/1-752 PGQADHTLVG QCTGAGYFMY FNTSLGIAEE AALLESRILY PKRKQQCLQF 351 400 ENSP00000230588/1-746 FYKMTGSPSD RLVVWVRRDD STGNVRKLVK VQTFQGDDDH NWKIAHVVLK ENSBTAP00000005686/1-752 FYKMSGSPSD RLVVWIRRDD STGNVRKLVK LKTFQGDFDH NWKIAHVTLR ENSTTRP00000008007/1-748 FYKMTGSPSD RLTIWVRRDD GTGNVRKLVK VKTFQGDLDQ NWKIAHVTLR bmy_00010T0/1-664 FYKMTGSPSD RLIVWVKRDD STGNIRKLVK ---------- ---------- BACU015834/1-752 FYKMTGSPSD RLIVWVKRDD STGNIRKLVK VKTFQGDFDQ NWKIAHVTLR 401 450 ENSP00000230588/1-746 EEQKFRYLFQ GTKGDPQNST GGIYLDDITL TETPCPTGVW TVRNFSQVLE ENSBTAP00000005686/1-752 EEKKFRYLFQ GTKGDPQNSS GGIYLDDITL TETPCPAGVW TVRNFSQVLQ ENSTTRP00000008007/1-748 EEKKFRYIFQ GTKGDPQNLS GGISLDDITL TETPCPAGVW TVRKFSQVLQ bmy_00010T0/1-664 ---------- GTKGDPQNSS GGIYLDDITL TETPCPAGVW TVRKFSQVLQ BACU015834/1-752 EEKKFRYLFQ GTKGDPQNSS GGVYLDDITL TETPCPAGVW TVRKFSQVLQ 451 500 ENSP00000230588/1-746 NTSKGDKLQS PRFYNSEGYG FGVTLYPNSR ESS---GYLR LAFHVCSGEN ENSBTAP00000005686/1-752 NTVKGDKLHS PRFYNSEGYG LGLTLYPQGR TSSGSSGYLG LTFHLCSGEN ENSTTRP00000008007/1-748 NAVKGDKLQS PRFYNSEGYG LGLTLYPHGR TTSRSSGYLG LAFHLCSGEN bmy_00010T0/1-664 NTVKGDKLQS PRFYNSEGYG LGLTLYPHGR TSSGSSGYLG LAFHLCSGEN BACU015834/1-752 NTVKGDKFQS PRFYNSEGYG LGLTLYPHGR TGSGSSGYLG LAFHLCSGEN 501 550 ENSP00000230588/1-746 DAILEWPVEN RQVIITILDQ EPDVRNRMSS SMVFTTSKSH TSPAINDTVI ENSBTAP00000005686/1-752 DAVLEWPVEN RQVIMTILDQ EADVRERMSS SMVFTTSKTQ TSTAINGSVI ENSTTRP00000008007/1-748 DAVLEWPVEN RQVIMTILDQ EPDVRKRMSS SMVFTTSKSQ TSTAVNGSVI bmy_00010T0/1-664 DAVLEWPVEN RQVIMTILDQ EPDVRKRMSS SMVFTTSKSQ TST------- BACU015834/1-752 DAVLEWPVEN RQVIMTILDQ EPDVRKRMSS SMVFTTSKSQ TSTAINGSVI 551 600 ENSP00000230588/1-746 WDRPSRVGTY HTDCNCFRSI DLGWSGFISH QMLKRRSFLK NDDLIIFVDF ENSBTAP00000005686/1-752 WDRPSVVGSY DNSCECFRSI DWGWSAVISH QMLKRRSFLK NDDLIIFVDF ENSTTRP00000008007/1-748 WDRPSVVGSY DKSCACFRSI DWGWGAIISH QMLKRRSYLK NDDLILFVDF bmy_00010T0/1-664 ---------- ---------- ---------- ---------- ---------- BACU015834/1-752 WDRPSVMGSY DNNCACFRSI DWGWDAIISH QMLKRRSFLK NDDLIMFVDF 601 650 ENSP00000230588/1-746 EDITHLSQTE VPTKGKRLSP QGLILQGQEQ QVSEEGSGKA MLEEALPVSL ENSBTAP00000005686/1-752 EDITHLNQTE VQVQNSRLTP QGLVLHCQEQ PTSEEDSRKA PLEPALPSSL ENSTTRP00000008007/1-748 EDITHLEQTE VHIEDSRLVP QSLVLQGQEQ PASEEGSGKA SLEKDLLGSL bmy_00010T0/1-664 -DITHLNQTE VRIKDSRLIP QSLVLQGQEQ PASEEGSGKA SLEKALLGSL BACU015834/1-752 EDITHLNQTE VHIKDSRLIP QSLVLQGQEQ PASEEGSGKA SLEKALLGSL 651 700 ENSP00000230588/1-746 SQGQPSRQKR SVENTGPLED HNWPQYFRDP CDPNPCQNDG ICVNVKGMAS ENSBTAP00000005686/1-752 ARGQSSRQKR SVDNTGPL-D HNWPQYFRDP CDPNPCQNEG ICVNVKGMVS ENSTTRP00000008007/1-748 DQGHRSRQKR SVDNTGPMED HNWPQYFRDP CDPNPCQNEG ICVKVKGMAS bmy_00010T0/1-664 DQGQRSRQKR SVDNTGPMED HNWPQYFRDP CDPNPCQNEG ICVNVKGMAS BACU015834/1-752 DQGQRSRQKR SVDNAGPMED HNWPQYFRDP CDPNPCQNEG ICVNVKGMAS 701 750 ENSP00000230588/1-746 CRCISGHAFF YTGERCQAVQ VHGSVLGMVI GGTAGVIFLT FSIIAILSQR ENSBTAP00000005686/1-752 CRCTSGHAFF YTGERCQALQ VHSSVLGLLI GGVAGVVFLT FTVISILYQR ENSTTRP00000008007/1-748 CRCVSGHAFF YTGERCQAVQ VHGSLLGLMI GGAASMVLLT FTILSILRQR bmy_00010T0/1-664 CRCVSGHAFF YTGERCQAMQ VHGSLLGLMI GGTASMVFLT FTIISILRQR BACU015834/1-752 CRCVSGHAFF YTGERCQAMQ VHGSLLGLMI GGTASMVFLT FTIISILRQR 751 800 ENSP00000230588/1-746 PRK--- ENSBTAP00000005686/1-752 SRQ--- ENSTTRP00000008007/1-748 RQ---- bmy_00010T0/1-664 PGSDAR BACU015834/1-752 PGSDAR