KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:27:06 2014 Check: 00 .. Name: ENSTTRP00000014457/1-1267 Len: 1354 Check: 3949 Weight: 1.00 Name: ENSBTAP00000005656/1-1257 Len: 1354 Check: 3229 Weight: 1.00 Name: bmy_14206T0/1-937 Len: 1354 Check: 2644 Weight: 1.00 Name: ENSP00000375836/1-1268 Len: 1354 Check: 7088 Weight: 1.00 Name: BACU011041/1-1340 Len: 1354 Check: 5657 Weight: 1.00 // 1 50 ENSTTRP00000014457/1-1267 ---------- MSSVAVL--- -TQESFAEHR SG-----LVP QQIKVATLNS ENSBTAP00000005656/1-1257 ---------- MSSVAVL--- -TQESFAEHR SG-----LVP QQIKVATLTS bmy_14206T0/1-937 ---------- MSSVAVL--- -TQESFAEHR SG-----LVP QQIKVATLNS ENSP00000375836/1-1268 ---------- MSSVAVL--- -TQESFAEHR SG-----LVP QQIKVATLNS BACU011041/1-1340 MLPGPLLFLT PINVTLLGGV PVRKSWQADR GGLRTDLLAT DRFAVATLNS 51 100 ENSTTRP00000014457/1-1267 EEESDPPTYK DAFPPLPEKA ACLENAQEPA GVWNNKIRPI KASVITQVFH ENSBTAP00000005656/1-1257 EEESDPPTYK DAFPPLPEKA ACLENAQEPA GAWSNKIRPI KASVITQVFH bmy_14206T0/1-937 EEESDPPTYK DAFPPLPEKT ACLENAQEPA GVWNNKIRPI KASVITQVFH ENSP00000375836/1-1268 EEESDPPTYK DAFPPLPEKA ACLESAQEPS GAWGNKIRPI KASVITQVFH BACU011041/1-1340 EEESDPPTYK DAFPPLPEKA ACLENAQEPA GVWNNKIRPI KASVITQVFH 101 150 ENSTTRP00000014457/1-1267 VPLEERKYKD MNQFGEGEQA KICLEIMQRT GAHLELSLAK DQGLSIMVSG ENSBTAP00000005656/1-1257 VPLEERKYKD MNQFGEGEQA KICLEIMQRT GAHLELSLAK DQGLSIMVSG bmy_14206T0/1-937 VPLEERKYKD MNQFGEGEQA KICLEIMQRT GAHLELSLAK DQGLSIMVSG ENSP00000375836/1-1268 VPLEERKYKD MNQFGEGEQA KICLEIMQRT GAHLELSLAK DQGLSIMVSG BACU011041/1-1340 VPLEERKYKD MNQFGEGEQA KICLEIMQRT GAHLELSLAK DQGLSIMVSG 151 200 ENSTTRP00000014457/1-1267 KLDAVMKARK DIVARLQTQA SATVAIPKEH HRFVIGKNGE KLQDLELKTA ENSBTAP00000005656/1-1257 KLDAVMKARK DIVARLQTQA SATVAIPKEH HRFVIGKNGE KLQDLELKTA bmy_14206T0/1-937 KLDAVMKARK DIVARLQTQA SATVAIPKEH HRFVIGKNGE KLQDLELKTA ENSP00000375836/1-1268 KLDAVMKARK DIVARLQTQA SATVAIPKEH HRFVIGKNGE KLQDLELKTA BACU011041/1-1340 KLDAVMKARK DIVARLQTQA SATVAIPKEH HRFVIGKNGE KLQDLELKTA 201 250 ENSTTRP00000014457/1-1267 TKIQIPRPDD ASNQIRITGT KEGIEKARHE VLLISAEQDK RAVERLEVEK ENSBTAP00000005656/1-1257 TKIQIPRPDD ASNQIRITGT KEGIEKARHE VLLISAEQDK RAVERLEVEK bmy_14206T0/1-937 TKIQIPRPDD ASNQIRITGT KEGIEKARHE VLLISAEQDK RAVERLEVEK ENSP00000375836/1-1268 TKIQIPRPDD PSNQIKITGT KEGIEKARHE VLLISAEQDK RAVERLEVEK BACU011041/1-1340 TKIQIPRPDD ASNQIRITGT KEGIEKARHE VLLISAEQDK RAVERLEVEK 251 300 ENSTTRP00000014457/1-1267 AFHPFIAGPY NRLVSEIMQE TGTRINIPPP SVNRTEIVFT GEKEQLAQAV ENSBTAP00000005656/1-1257 AFHPFIAGPY NRLVSEIMQE TGTRINIPPP SVSRTEIVFT GEKEQLAQAV bmy_14206T0/1-937 AFHPFIAGPY NRLVSEIMQE TGTRINIPPP SVSRTEIVFT GEKEQLAQAV ENSP00000375836/1-1268 AFHPFIAGPY NRLVGEIMQE TGTRINIPPP SVNRTEIVFT GEKEQLAQAV BACU011041/1-1340 AFHPFIAGPY NRLVSEIMQE TGTRINIPPP SVSRTEIVFT GEKEQLAQAV 301 350 ENSTTRP00000014457/1-1267 ARVKKVYEEK KKRTTTIAVE VRKSQHKYVI GPKGNSLQEI LERTGVSVEI ENSBTAP00000005656/1-1257 ARVKKIYEEK KKKTTTIAVE VKKSQHKYVI GPKGNSLQEI LERTGVSVEI bmy_14206T0/1-937 ARIRKIYEEK KKKTTTIAVE VKKSQHKYVI GPKGNSLQEI LERTGVSVEI ENSP00000375836/1-1268 ARIKKIYEEK KKKTTTIAVE VKKSQHKYVI GPKGNSLQEI LERTGVSVEI BACU011041/1-1340 ARIRRVYEEK KKKTTTIAVE VKKSQHKYVI GPKGNSLQEI LERTGVSVEI 351 400 ENSTTRP00000014457/1-1267 PPSDSTSETV ILRGEPEKLG QALTEVYAKA NSFTVSSVSA PSWLHRFIIG ENSBTAP00000005656/1-1257 PPSDSASETV ILRGEPEKLG QALTEVYAKA NSFTVSSVSA PSWLHRFIIG bmy_14206T0/1-937 PPSDSISETV ILRGEPEKLG QALTEVYAKA NSFTVSSVSA PSWLHRFIIG ENSP00000375836/1-1268 PPSDSISETV ILRGEPEKLG QALTEVYAKA NSFTVSSVAA PSWLHRFIIG BACU011041/1-1340 PPSDSISETV ILRGEPEKLG QALTEVYAKA NSFTVSSVSA PSWLHRFIIG 401 450 ENSTTRP00000014457/1-1267 KKGQNLAKIT QQMPKVHIEF TEGEDRITLE GPTEDVNVAQ EQIEAMVKDL ENSBTAP00000005656/1-1257 KKGQNLAKIT QQMPKVHIEF TEGEDRITLE GPTEDVSVAQ EQIEAMVKDL bmy_14206T0/1-937 KKGQNLAKIT QQMPKVHIEF TEGEDRITLE GPTEDVNVAQ EQIEAMVKDL ENSP00000375836/1-1268 KKGQNLAKIT QQMPKVHIEF TEGEDKITLE GPTEDVNVAQ EQIEGMVKDL BACU011041/1-1340 KKGQNLAKIT QQMPKVHIEF TEGEDRITLE GPTEDVNVAQ EQIEAMVKDL 451 500 ENSTTRP00000014457/1-1267 INRMDYVEIN IDHKFHRHLI GKSGAN---- -----INRIK DQYKVSVRIP ENSBTAP00000005656/1-1257 INRMDYVEIN IDHRFHRHLI GKSGAN---- -----INRIK DQCKVSVRIP bmy_14206T0/1-937 ITRMDYVEIN IDHKFHRHLI GKSGAN---- -----INRIK DQYKVSVRIP ENSP00000375836/1-1268 INRMDYVEIN IDHKFHRHLI GKSGAN---- -----INRIK DQYKVSVRIP BACU011041/1-1340 INRMDYVEIN IDHKFHRHLI GKSXXXXXXX XXXXVINRIK DQYKVSVRIP 501 550 ENSTTRP00000014457/1-1267 PDSEKSNLIR IEGDPQGVQQ AKRELLELAS RMENERTKDL IIEQRFHRTI ENSBTAP00000005656/1-1257 PDSEKSSLIR IEGDPQGVRQ AKRELLELAS RMENERTKDL IIEQRFHRTI bmy_14206T0/1-937 PDSEKSNLIR IEGDPQGVQQ AKRELLELAS RMENERTKDL IIEQRFHRTI ENSP00000375836/1-1268 PDSEKSNLIR IEGDPQGVQQ AKRELLELAS RMENERTKDL IIEQRFHRTI BACU011041/1-1340 PDSEKSNLIR IEGDPQGVQQ AKRELLELAS RMENERTKDL IIEQRFHRTI 551 600 ENSTTRP00000014457/1-1267 IGQKGERIRE IRDKFPEVII NFPDPAQKSD IVQLRGPKNE VEKCTKYMQK ENSBTAP00000005656/1-1257 IGQKGERIRE IRDKFPEVII NFPDPAQKSD IVQLRGPKNE VEKCTKYMQK bmy_14206T0/1-937 IGQKGERIRE IRDKFPEVII NFPDPAQKSD IVQLRGPKNE VEKCTKYMQK ENSP00000375836/1-1268 IGQKGERIRE IRDKFPEVII NFPDPAQKSD IVQLRGPKNE VEKCTKYMQK BACU011041/1-1340 IGQKGERIRE IRDKFPEVII NFPDPAQKSD IVQLRGPKNE VEKCTKYMQK 601 650 ENSTTRP00000014457/1-1267 VAADLXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000005656/1-1257 MVADLVENSY SISVPIFKQF HKNIIGKGGA NIKKIREESN TKIDLPAENS bmy_14206T0/1-937 MVADLVENSY SISVPIFKQF HKNIIGKGGA NIKKIREESN TKIDLPAENS ENSP00000375836/1-1268 MVADLVENSY SISVPIFKQF HKNIIGKGGA NIKKIREESN TKIDLPAENS BACU011041/1-1340 MVADLVENSY SISVPIFKQF HKNIIGKGGA NIKKIREESN TKIDLPAENS 651 700 ENSTTRP00000014457/1-1267 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX-XXXX -XXXXXXXXX ENSBTAP00000005656/1-1257 NSETIVITGK RANCEAARSR ILSIQKDLRV QFEFYCVSAP RGPRHSTLGG bmy_14206T0/1-937 NSETIIITGK RANCEAARSR ILSIQKDLAN IAEVE-VSIP -AKLHNSLIG ENSP00000375836/1-1268 NSETIIITGK RANCEAARSR ILSIQKDLAN IAEVE-VSIP -AKLHNSLIG BACU011041/1-1340 NSETIIITGK RANCEAARSR ILSIQKDLAN IAEVE-VSIP -AKLHNSLIG 701 750 ENSTTRP00000014457/1-1267 XXXXXXXXXX --XXXXXXXX XXXXXXXXX- -----XXXXX XXXXXXXXXX ENSBTAP00000005656/1-1257 PKGRIIRNVR THDLCHFARV VLPSASSAST LCFMPDTIVT HAPSSETAKP bmy_14206T0/1-937 TKGRLIRSIM --EECGGVHI HFPVEGSGS- -----DTVVI RGPSSDVEKA ENSP00000375836/1-1268 TKGRLIRSIM --EECGGVHI HFPVEGSGS- -----DTVVI RGPSSDVEKA BACU011041/1-1340 TKGRLIRSIM --EECGGVHI HFPVEGSGS- -----DTVVI RGPSSDVEKA 751 800 ENSTTRP00000014457/1-1267 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000005656/1-1257 TKAVSDHGTR AQEKSRTSDL AERSS----- -GRGSAELKR TLPQADKPTG bmy_14206T0/1-937 RKQLLHLAEE KQTKSFTVDI RAKPEYHKFL IGKGGGKIRK VRDSTGARVI ENSP00000375836/1-1268 KKQLLHLAEE KQTKSFTVDI RAKPEYHKFL IGKGGGKIRK VRDSTGARVI BACU011041/1-1340 RKQLLHLAEE KQTKSFTVDI RAKPEYHKFL IGKGGGKIRK VRDSTGARVI 801 850 ENSTTRP00000014457/1-1267 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXX-XXX XXXXXXXXXX ENSBTAP00000005656/1-1257 FPAASDLARE SLP---REEL GLQVQPYLLR LRFPLECSLI LKQPHVKGPP bmy_14206T0/1-937 FPTAEDKDQD LITIIGKEDA VREAQKELEA LIQNLD-NVV EDYMLVDPKH ENSP00000375836/1-1268 FPAAEDKDQD LITIIGKEDA VREAQKELEA LIQNLD-NVV EDSMLVDPKH BACU011041/1-1340 FPTAEDKDQD LITIIGKEDA VREAQRELEA LIQSLD-NVV EDCMLVDPRH 851 900 ENSTTRP00000014457/1-1267 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000005656/1-1257 LTHAASSRGR GL----EGRR GAWLVRPVRS EPRAPVSSRG LRPPGRCCLG bmy_14206T0/1-937 HRHFVIRRGQ VLREIAEEYG GVMVSFPRSG TQSDKVTLKG AKDCVEAAKK ENSP00000375836/1-1268 HRHFVIRRGQ VLREIAEEYG GVMVSFPRSG TQSDKVTLKG AKDCVEAAKK BACU011041/1-1340 HRHFVIRRGQ VLREIAEEYG GVMVSFPRSG TQSDKVTLKG AKDCVEAAKK 901 950 ENSTTRP00000014457/1-1267 XXXXXXXXXE AQVTIECAIP QKFHRSVMGP KGSKIQQITR DYNVQIKFPD ENSBTAP00000005656/1-1257 RLRLCSCLLD AVLLHECPF- -----VVLVT SGSRVEPLDP ASRCQ---PQ bmy_14206T0/1-937 RIQEIIEDL- ---------- -------VGA REAR------ ---------- ENSP00000375836/1-1268 RIQEIIEDLE AQVTLECAIP QKFHRSVMGP KGSRIQQITR DFSVQIKFPD BACU011041/1-1340 RIQEIIEDLE AQVTIECAIP QKFHRSVMGP KGSKIQQITR DYNVQIKFPD 951 1000 ENSTTRP00000014457/1-1267 REENPVHSVE PAVQENGDDA GEGRDGKEAE PGSPRRCDII VISGRKEKCE ENSBTAP00000005656/1-1257 RACTVRHSVE PAVHENGEDA AEGREGKEAE PGSPRRCDII VISGRKEKCE bmy_14206T0/1-937 ---------- ---------Q GSGPQG---- ---------- ---------- ENSP00000375836/1-1268 REENAVHSTE PVVQENGDEA GEGREAKDCD PGSPRRCDII IISGRKEKCE BACU011041/1-1340 REENPVHSVE PAVQENGDDA GEGRDGKEAE PGSPRRCDII VISGRKEKCE 1001 1050 ENSTTRP00000014457/1-1267 AAKEALEALV PVTIEVEVPF DLHRYIIGQK GSGIRKMMDE FEVNIHVPAP ENSBTAP00000005656/1-1257 AAKEALEALV PVTIEVEVPF DLHRYIIGQK GSGIRKMMDE FEVNIHVPAP bmy_14206T0/1-937 ---------- ---------- ---------- ---------- ---------- ENSP00000375836/1-1268 AAKEALEALV PVTIEVEVPF DLHRYVIGQK GSGIRKMMDE FEVNIHVPAP BACU011041/1-1340 AAKEALEALV PVTIEVEVPF DLHRYIIGQK GSGIRKMMDE FEVNIHVPAP 1051 1100 ENSTTRP00000014457/1-1267 ELQSDIIAIT GLAANLDRAK AGLLERVKEL QAEQEDRALR SFKLSVTVDP ENSBTAP00000005656/1-1257 ELQSDIIAIT GLAAHLDRAK AGLLERVKEL QAEQEDRALR SFKLSVTVDP bmy_14206T0/1-937 ---------- GWASHKDRPP QG-------- -----ERS-- ---------- ENSP00000375836/1-1268 ELQSDIIAIT GLAANLDRAK AGLLERVKEL QAEQEDRALR SFKLSVTVDP BACU011041/1-1340 ELQSDIIAIT GLAANLDRAK AGLLERVKEL QAEQEDRALR SFKLSVTVDP 1101 1150 ENSTTRP00000014457/1-1267 KYHPKIIGRK GAVITQIRLE HDVNIQFPDK DDGN------ ---------- ENSBTAP00000005656/1-1257 KYHPKIIGRK GAVITQIRLE HDVNIQFPDK DDGS------ ---------- bmy_14206T0/1-937 ---------- ---------- -------PEK GGGF------ ---------- ENSP00000375836/1-1268 KYHPKIIGRK GAVITQIRLE HDVNIQFPDK DDGN------ ---------- BACU011041/1-1340 KYHPKIIGRK GAVITQIRLE HDVNIQFPDK DDGNQAQPLG GDLGPPAPRP 1151 1200 ENSTTRP00000014457/1-1267 ---------- ---------- --------QP QDQITITGYE KNTEAARDAI ENSBTAP00000005656/1-1257 ---------- ---------- --------QP QDQITITGYE KNTEAARDAI bmy_14206T0/1-937 ---------- ---------- ---------- ---------- ---------- ENSP00000375836/1-1268 ---------- ---------- --------QP QDQITITGYE KNTEAARDAI BACU011041/1-1340 AFLSSRPLTA LESAPGLLTD PDPDPPPPQP QDQITITGYE KNTEAARDAI 1201 1250 ENSTTRP00000014457/1-1267 LKIVGELEQM VSEDVPLDHR VHARIIGARG KAIRKIMDEF KVDIRFPQSG ENSBTAP00000005656/1-1257 LKIVGELEQM VSEDVPLDHR VHARIIGARG KAIRKIMDEF KVDIRFPQSG bmy_14206T0/1-937 ------LKQ- -----PLEPR ---------- ---------- ---------- ENSP00000375836/1-1268 LRIVGELEQM VSEDVPLDHR VHARIIGARG KAIRKIMDEF KVDIRFPQSG BACU011041/1-1340 LKIVGELEQM VSEDVPLDHR VHARIIGARG KAIRKIMDEF KVDIRFPQSG 1251 1300 ENSTTRP00000014457/1-1267 APDPNCVTVT GLPENVEEAI DHILNLEEEY LADVVDSEAL QLYVKPAPHE ENSBTAP00000005656/1-1257 APDPNCVTVT GLPENVEEAI DHILNLEEEY LADVVDSEAL QLYLKPPAHE bmy_14206T0/1-937 ---------- ---------- ---------- ---------- ------PPRG ENSP00000375836/1-1268 APDPNCVTVT GLPENVEEAI DHILNLEEEY LADVVDSEAL QVYMKPPAHE BACU011041/1-1340 APDPNCVTVT GLPENVEEAI DHILNLEEEY LADVVDSEAL QLYVKPAPHE 1301 1350 ENSTTRP00000014457/1-1267 ESKAPSRGFV VRDAPWTASS SEKAPDMSSS EEFPSFGA-V APKTLPWGPK ENSBTAP00000005656/1-1257 ESKAPSKGFV VRDAPWTASS SEKAPDMSSS EEFPSFGAQV APKTLPWGPK bmy_14206T0/1-937 SARPP----- --DVLWPL-- ---------- ---------- ------WPRL ENSP00000375836/1-1268 EAKAPSRGFV VRDAPWTASS SEKAPDMSSS EEFPSFGAQV APKTLPWGPK BACU011041/1-1340 ESRAPSKGFV VRDAPWTASS SEKAPDMSSS EEFPSFGAQV APKTLPWGPK 1351 1400 ENSTTRP00000014457/1-1267 R--- ENSBTAP00000005656/1-1257 R--- bmy_14206T0/1-937 RDGT ENSP00000375836/1-1268 R--- BACU011041/1-1340 R---