KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:48 2014 Check: 00 .. Name: ENSP00000339435/1-340 Len: 340 Check: 9585 Weight: 1.00 Name: ENSBTAP00000005532/1-334 Len: 340 Check: 888 Weight: 1.00 Name: bmy_00186T0/1-258 Len: 340 Check: 3579 Weight: 1.00 Name: BACU018449/1-333 Len: 340 Check: 1332 Weight: 1.00 Name: ENSTTRP00000001103/1-337 Len: 340 Check: 6724 Weight: 1.00 // 1 50 ENSP00000339435/1-340 MCAQYCISFA DVEKAHINIR DSIHLTPVLT SSILNQLTGR NLFFKCELFQ ENSBTAP00000005532/1-334 MCDQYCISFA DVEKAHINIR DFIHLTPVLT SSILNQITGR NLFFKCELFQ bmy_00186T0/1-258 MCDQYCISFA DVEKAHINIR DFIHLTPVLT SSILNQVTGR NLFFK----- BACU018449/1-333 MCDQYCISFA DVEKAHINIR NFIHLTPVLT SSILNQVTGR NLFFKCELFQ ENSTTRP00000001103/1-337 MCDQYCISFA DVEKAHINIR DFIHLTPVLT SSILNQVAGR NLFFKCELFQ 51 100 ENSP00000339435/1-340 KTGSFKIRGA LNAVRSLVPD ALERKPKAVV THSSGNHGQA LTYAAKLEGI ENSBTAP00000005532/1-334 KTGSFKIRGA LNAIRGLISA HPEEKPRAVV AHSSGNHGQA LSFAARLEGI bmy_00186T0/1-258 ---------- ---------- ---------- ---------- --------WI BACU018449/1-333 KTGSFKIRGA LNAIRGLISA TSEEKPKAVV THSSGNHGQA LSYAAKLQGI ENSTTRP00000001103/1-337 KTGSFKIRGA LNAIRGLISA TSEEKPKAVV THSSGNHGQA LSYAAKLQGI 101 150 ENSP00000339435/1-340 PAYIVVPQTA PDCKKLAIQA YGASIVYCEP SDESRENVAK RVTEETEGIM ENSBTAP00000005532/1-334 PAYVIVPETA PNCKKLAIQA YGASIVYSEQ SEESRENITK RIAEETEGIM bmy_00186T0/1-258 PAYIVVPETA PNCKKLAIQG YGASIVYSEQ SDE------- ---------- BACU018449/1-333 PAYIVVPETA PNCKKLAIQG YGASIVYSEQ SDESRENVTK RIVEETKGIM ENSTTRP00000001103/1-337 PAYIVVPETA PNCKKLAIQG YGASIVYSEQ SDESRENVTK RIVEETEGIM 151 200 ENSP00000339435/1-340 VHPNQEPAVI AGQGTIALEV LNQVPLVDAL VVPVGGGGML AGIAITVKAL ENSBTAP00000005532/1-334 VHPNQEPAVI AGQGTIAMEV LNQVPLVDAL VVPVGGGGML AGIAVTVKAL bmy_00186T0/1-258 -----EPAVI AGQGTIAMEV LNQVPLVDAL VVPVGGGGMV AGIAVTVKAL BACU018449/1-333 VHPNQEPAVI AGQGTIAMEV LNQVPLVDAL VVPVGGGGMV AGIAITVKAL ENSTTRP00000001103/1-337 VHPNQEPAVI AGQGTIAMEV LNQVPLVDAL VVPVGGGGMV AGIAITVKAL 201 250 ENSP00000339435/1-340 KPSVKVYAAE PSNADDCYQS KLKGKLMPNL YPPETIADGV KSSIGLNTWP ENSBTAP00000005532/1-334 RPSVKVYAAE PLNADDCYQS KLKGELTPNP YPPETIADGI KSSIGLNTWP bmy_00186T0/1-258 RPSVKVYAAE PLNANDCYQS KLKGELTPNP YPPETIADGV RSSIGLNTWP BACU018449/1-333 RPSVKVYAAE PLNANDCYQS KLKGELTPNP YPPETIADGV RSSIGLNTWP ENSTTRP00000001103/1-337 RPSVKVYAAE PLNANDCYQS KLKGELTPNP YPPETIADGV RSSIGLNTWP 251 300 ENSP00000339435/1-340 IIRDLVDDIF TVTEDEIKCA TQLVWERMKL LIEPTAGVGV AAVLSQHFQT ENSBTAP00000005532/1-334 IIRDLVDDVF TVTEDEIKYA TQLVWERMKL LIEPTAGVGV AVVLSQHFRT bmy_00186T0/1-258 IIRDLVDDVF TVTEDEIKYA TQLVWERMKL LIEPTAGVGV AAVLSRHFQT BACU018449/1-333 IIRDLVDDVF TVTEDEIKYA TQLVWERMKL LIEPTAGVGV AAVLSQHFQT ENSTTRP00000001103/1-337 IIRDLVDDV- TVTEDEIKYA TQLVWERMKL LIEPTAGVGV AAVLSQHFQT 301 350 ENSP00000339435/1-340 VSPEVKNICI VLSGGNVDLT SSITWVKQAE RPASYQSVSV ENSBTAP00000005532/1-334 VPAEVKNICI VLSGGNVDLT -SLTWVKKQD EKAAP----- bmy_00186T0/1-258 VSAEVKNICI VLSGGNVDLT -SLTWVKQAE KPAL------ BACU018449/1-333 VSAEVKNICI VLSGGNVDLT -SLTWVKQAE KPAL------ ENSTTRP00000001103/1-337 VSAEVKNICI VLSGGNVDLT -SLTWVKQAE KPALK-SVSV