KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:26:26 2014 Check: 00 .. Name: BACU002370/1-170 Len: 358 Check: 1907 Weight: 1.00 Name: ENSP00000232854/1-338 Len: 358 Check: 4642 Weight: 1.00 Name: ENSBTAP00000005382/1-321 Len: 358 Check: 6610 Weight: 1.00 Name: bmy_15929T0/1-347 Len: 358 Check: 484 Weight: 1.00 Name: ENSTTRP00000006526/1-340 Len: 358 Check: 1734 Weight: 1.00 // 1 50 BACU002370/1-170 ------MLRA LLSGLGWRGG IWGCTFSSQQ PHLPPARLLN ATELVSHWTV ENSP00000232854/1-338 MELWGRMLWA LLSGPGRRGS TRGWAFSSWQ PQPPLAGLSS AIELVSHWTG ENSBTAP00000005382/1-321 ------MLRA LLSGLGWRKG IWGCAFSSWQ PHQPPAGL-S ATEVVSHWTV bmy_15929T0/1-347 MERRGRMLRA LLSGLGWRGG IWGCTFSSQQ PHLPPARLLN ATELVSHWTV ENSTTRP00000006526/1-340 VGHRGRMLRA LLSGLGWRGG IWGCTFSSRQ PHLPPARLLS ATELVSHWTV 51 100 BACU002370/1-170 VFKKRGIPEA RESSEYIVAH VLGAKT---- ---------- ---VKC---- ENSP00000232854/1-338 VFEKRGIPEA RESSEYIVAH VLGAKTFQSL RPALWTQPLT SQQLQCIREL ENSBTAP00000005382/1-321 VFEEKGIPEA RESSEYIVAH VLGAKTFQSL RPALRTQPLT PWQLQCIQEL bmy_15929T0/1-347 VFEKRGIPEA RESSEYIVAH VLGAKT---- -------PLT PWQLQYVQEL ENSTTRP00000006526/1-340 VFEKRGIPEA RESSEYIVAH VLGAKTFQSL RPGLWTQPLT PWQLQYVQEL 101 150 BACU002370/1-170 ---------- ---------- ---------- ---------- ---------- ENSP00000232854/1-338 SSRRLQRMPV QYILGEWDFQ GLSLRMVPPV FIPRPETEEL VEWVLEEVAQ ENSBTAP00000005382/1-321 SSYRLQRMPV QYILGEWDFQ GLNLKMAPPV FIPRPETEEL VEWVLEEVTQ bmy_15929T0/1-347 SSYRLQRMPV QYILGEWDFQ GLSLKMAPPV FIPRPETEEL VEWVLEEVTQ ENSTTRP00000006526/1-340 SSYRLQRMPV QYILGEWDFQ GLSLKMAPPV FIPRPETEEL VEWVLEEVTQ 151 200 BACU002370/1-170 ---------- SVVKRAGSGG RE-------- ---------D SGEETSRLFH ENSP00000232854/1-338 RSHAVGSPGS PLILEVGCGS GAISLSLLSQ LPQSRVIAVD KREAAISLTH ENSBTAP00000005382/1-321 GPRVVGAEGG PLILEVGCGS GAISLSLLSR LPQSRVTAVD KGEAAICLTH bmy_15929T0/1-347 GPHVVGAQGG PLILEVGCGS GAISLSLLSK LPQSRVIAVD KGEAAICLAH ENSTTRP00000006526/1-340 GPRVVGAQGG PLILEVGCGS GAISLSLLSK LPQSRVIAVD KGEAAICLAR 201 250 BACU002370/1-170 STE-----SA ELRMMRF--- ---FWRNVL- -GRYLFIHPA NYYSVCQALG ENSP00000232854/1-338 ENAQRLRLQD RIWIIHLDMT SERSWTH-LP WGPMDLIVSN PPYVFHQDME ENSBTAP00000005382/1-321 ENAQRLRLQA RIQIVTFDVT LVESWAHLLP WGPVDLVVSN PPYVFHRDME bmy_15929T0/1-347 ENAQRLQLQD RIRIIPFDVT LEGSWAHLLP WGPVDLVVSN PPYVFHRDME ENSTTRP00000006526/1-340 ENAQRLRLQD RIRIIPFDVT LDGSWAHLLP WGPVDLVVSN PPYVFHRDME 251 300 BACU002370/1-170 VQGSPRWPVL DPLALSTKET ---------- ---------- ---------- ENSP00000232854/1-338 QLAPEIRSYE DPAALDGGEE GMDIITHILA LAPRLLKDSG SIFLEVDPRH ENSBTAP00000005382/1-321 NLAPEILRYE DPVALDGGEE GMDIITHILA LAPQLLKDSG SIFLEVDPRH bmy_15929T0/1-347 KLAPEILSYE DPLALDGGEE GMDIITHILA LAPRLLKDSG SIFLEVDSRH ENSTTRP00000006526/1-340 KLAPEILSYE DPLALDGGEE GMDIITHILA LAPRLLKDSG SIFLEVDPRH 301 350 BACU002370/1-170 ------WVRG ASHSH----S LWGSFRA--- ---------- ---------- ENSP00000232854/1-338 PELVSSWLQS RPDLYLNLVA VRRDFCGRPR FLHIRRSGP- ---------- ENSBTAP00000005382/1-321 PELVGSWLQS QPDLPLNLVA VRRDFRGR-- ---------- ---------- bmy_15929T0/1-347 PELVGSWLQS QPDLSLNLVA VRRDFCGRPR FLHIRRCGPQ HGCPVDAWPG ENSTTRP00000006526/1-340 PELVGSWLQS QPDLSLNLVA VRRDFCGRPR FLHIRRCGPQ ---------- 351 400 BACU002370/1-170 -------- ENSP00000232854/1-338 -------- ENSBTAP00000005382/1-321 -------- bmy_15929T0/1-347 PQLARVPG ENSTTRP00000006526/1-340 --------