KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:54 2014 Check: 00 .. Name: bmy_00072T0/1-318 Len: 319 Check: 5308 Weight: 1.00 Name: ENSP00000418221/1-246 Len: 319 Check: 7761 Weight: 1.00 Name: ENSBTAP00000005214/1-247 Len: 319 Check: 3529 Weight: 1.00 Name: BACU017980/1-256 Len: 319 Check: 6924 Weight: 1.00 Name: ENSTTRP00000006589/1-247 Len: 319 Check: 1630 Weight: 1.00 // 1 50 bmy_00072T0/1-318 MSSSRRVGKM AEEEPRKKIP LVPENLLKKR KAYQALKATQ AKQALLQRKE ENSP00000418221/1-246 ---------M AEQE-QRKIP LVPENLLKKR KAYQALKATQ AKQALLAKKE ENSBTAP00000005214/1-247 ---------M AEEEPRRKIP LVPENLLKKR KAYQALKATQ AKQALLQKKE BACU017980/1-256 MSSSRRVGKM AEEEPRKKIP LVPENLLKKR KAYQALKATQ AKQALLQRKE ENSTTRP00000006589/1-247 ---------M AEEEPRKKIP LVPENLLKKR KAYQALKATQ AKQALLQRKE 51 100 bmy_00072T0/1-318 QRKGKEIKFK RLEWFLHDSW RQLRDRVRLR RLEVKPHGLE VPDKHSLAFV ENSP00000418221/1-246 QKKGKGLRFK RLESFLHDSW RQKRDKVRLR RLEVKPHALE LPDKHSLAFV ENSBTAP00000005214/1-247 QRKGKQVKFK RLEWFVHDSW RQLRDRVRLR RLTVKPHGLE VPDKHSLAFV BACU017980/1-256 QRKGKEIKFK RLEWFLRDSW RQLRDRGRLR RLEVKPHGLE VPDKHSLAFV ENSTTRP00000006589/1-247 QRKGKEIKFK RLEWFLHDSW RQLRDKVRLR RLEVKPHGLE VPDKHSLAFV 101 150 bmy_00072T0/1-318 LRIERINGVS LLVQRTIARL RLNKIFSGVF MQVTPQTIKT LRIVEPYVTW ENSP00000418221/1-246 VRIERIDGVS LLVQRTIARL RLKKIFSGVF VKVTPQNLKM LRIVEPYVTW ENSBTAP00000005214/1-247 VRIERINGVS SLVQRTIARL RLNKIFSGVF VKVTPETIKT LRIVEPYVTW BACU017980/1-256 LRIERINGVS LLVQRTIARL RLKKIFSGVF MQVTPQTIKT LRIVEPYVTW ENSTTRP00000006589/1-247 LRIERINGVS LLVQRTIARL RLSKIFSGVF MQVTPRTIKT LRIVEPYVTW 151 200 bmy_00072T0/1-318 GFPNLKSVRE LILKRGQAKV KNKIIPLTDN TVIEEHLAYL KAQCIRSMCF ENSP00000418221/1-246 GFPNLKSVRE LILKRGQAKV KNKTIPLTDN TVIEEHLGKF GVICLEDLIH ENSBTAP00000005214/1-247 GFPNLKSVRE LILKRGQAKV KNKVIPLTDN TVIEEHLGKF DVICLEDLIH BACU017980/1-256 GFPNLKSVRE LILKRGQAKV KNKIIPLTDN TVIEEHLGKF GVICLEDLIH ENSTTRP00000006589/1-247 GFPNLKSVRE LILKRGQAKV KNKIIPLTDN TVIEEHLGKF GVICLEDLIH 201 250 bmy_00072T0/1-318 CIMELLPSIF KQDYFLLYLQ KPEGKGQGKD GDVQGRHFSS HFSSKKKFLC ENSP00000418221/1-246 EI-------- ---------- ---------- -AFPGKHFQE I----SWFLC ENSBTAP00000005214/1-247 EI-------- ---------- ---------- -AFPGKNFLA I----SRFLR BACU017980/1-256 EI-------- ---------- ---------- -AFPGKNFQV I----SGFLR ENSTTRP00000006589/1-247 EI-------- ---------- ---------- -AFPGKNFQV I----SGFLR 251 300 bmy_00072T0/1-318 VFCKD-RRPP LKPAKDLCHG GGSPVLSHLS WDLMLVNERI PTYEYKTAVD ENSP00000418221/1-246 PFHLSVARHA TKNRVGFLKE MGTPGYR--- ------GERI ---------- ENSBTAP00000005214/1-247 PFQLSVARHA TKNRVGFLKE VGSPGYR--- ------GERI ---------- BACU017980/1-256 PFQLSVARHA TKNRVGFLKE VGSPGYR--- ------GERI ---------- ENSTTRP00000006589/1-247 PFQLSVARHA TKNRVGFLKE VGSPGYR--- ------GERI ---------- 301 350 bmy_00072T0/1-318 QAQGHIEPGV SKGLVLERT ENSP00000418221/1-246 ---------- -NQLIRQLN ENSBTAP00000005214/1-247 ---------- -NELIRQLN BACU017980/1-256 ---------- -NQLIRQLN ENSTTRP00000006589/1-247 ---------- -NQLIRQLN