KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:20 2014 Check: 00 .. Name: ENSTTRP00000008893/1-389 Len: 815 Check: 2564 Weight: 1.00 Name: ENSP00000362116/1-388 Len: 815 Check: 3323 Weight: 1.00 Name: ENSBTAP00000004973/1-308 Len: 815 Check: 8170 Weight: 1.00 Name: bmy_00094T0/1-398 Len: 815 Check: 1393 Weight: 1.00 Name: BACU017995/1-814 Len: 815 Check: 4262 Weight: 1.00 // 1 50 ENSTTRP00000008893/1-389 ---------- ---------- ---------- ---------- --MKWMVVAL ENSP00000362116/1-388 ---------- ---------- ---------- ---------- --MKWMVVVL ENSBTAP00000004973/1-308 ---------- ---------- ---------- ---------- --MKWMVLAL bmy_00094T0/1-398 ---------- ---------- ---------- -----MPPNN SIKTLPYPPW BACU017995/1-814 MGFQPTFLLS ECSRPPQLPE NVFLRVCYSI SDVGNDKPGI GIMKWMVVAL 51 100 ENSTTRP00000008893/1-389 ICLQTLE-AA VIKVPVKKLK SIRETMKEKG ILEDFLRTHK YDPAQRYHFS ENSP00000362116/1-388 VCLQLLE-AA VVKVPLKKFK SIRETMKEKG LLGEFLRTHK YDPAWKYRFG ENSBTAP00000004973/1-308 VCLQALEAAA LVKIPLKKFK SIREIMKEKG LLEDFLRTYK HDPAQKYRFG bmy_00094T0/1-398 GPPPAPEGKP FCRVPVKKLK SIRETMKEKG ILEDFLRTHK YDPAQKYRFN BACU017995/1-814 VCLQTLE-AA VIKVPVKKLK SIRETMKEKG ILEDFLRTHK YDPAQKYRFN 101 150 ENSTTRP00000008893/1-389 DFSVASEPMD YMDAAYFGEI SIGTPPQNFL VLFDTGSSNL WVPSVYCQSQ ENSP00000362116/1-388 DLSVTYEPMA YMDAAYFGEI SIGTPPQNFL VLFDTGSSNL WVPSVYCQSQ ENSBTAP00000004973/1-308 DFIVATEPMD YMDAAYFGEI SIGTPPQNFL VLFDTGSSNL WVPSVYCQSQ bmy_00094T0/1-398 DFSVASEPMD YMDAAYFGEI SIGTPPQNFL VLFDTGSSNL WVPSVYCQSQ BACU017995/1-814 DFSVASEPMD YMDAAYFGEI SIGTPPQNFL VLFDTGSSNL WVPSVYCQSQ 151 200 ENSTTRP00000008893/1-389 ACTSHTRFNP SLSSTYSTNG QTFSLQYGSG SLTGFFGYDT LTVQGIKVPN ENSP00000362116/1-388 ACTSHSRFNP SESSTYSTNG QTFSLQYGSG SLTGFFGYDT LTVQSIQVPN ENSBTAP00000004973/1-308 ACTSHTRFNH SLSSTYSTNE QTFSLQYGSG SLTGILGYDT LTVQGIKVPN bmy_00094T0/1-398 ACTSHARFNP SLSSTYSSNG QIFSLQYGSG SLTGFFGYDT LTVQGIKVPN BACU017995/1-814 ACTSHTRFNP SLSSTYFSNG QTFSLQYGSG SLTGFFGYDT LTVQGIKVPN 201 250 ENSTTRP00000008893/1-389 QEFGLSEKEP GTNFLYAKFD GIMGMAYPAL SMGGARTALQ GMLQEGALTS ENSP00000362116/1-388 QEFGLSENEP GTNFVYAQFD GIMGLAYPAL SVDEATTAMQ GMVQEGALTS ENSBTAP00000004973/1-308 QEFGLSKTEP GTNFLYAKFD GIMGMAYPSL SVDGATTVLQ GMLQEGALTS bmy_00094T0/1-398 QEFGLSENEP GTNFLYAKFD GIMGMAYPAL SMGRATTALQ GMLQEGALTS BACU017995/1-814 QEFGLSENEP GTNFLYAKFD GIMGMAYPAL SMGRATTALQ GMLQEGALTS 251 300 ENSTTRP00000008893/1-389 PVFSFYLGXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XX-XXXXXXX ENSP00000362116/1-388 PVFSVYLSNQ QGS-SGGAVV FGGVDSSLYT GQIYWAPVTQ ELYWQIGIEE ENSBTAP00000004973/1-308 PVFSFYLSSQ QGSQDGGAVI FGGVDNCLYT GQIYWAPVTQ ELYWQIGFEE bmy_00094T0/1-398 PVFSFYLSSQ QGSQDGGAVI FGGVDSSLYT GQIYWAPVTQ ELYWQIGIEE BACU017995/1-814 PVFSFYLSSQ QGSQDRGAVI FGGVDSSLYT GQIYWAPVTQ ELYWQIGIEE 301 350 ENSTTRP00000008893/1-389 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXF ENSP00000362116/1-388 FLIGGQASGW CSEGCQAIVD TGTSLLTVPQ QYMSALLQAT GAQEDEYGQF ENSBTAP00000004973/1-308 FLIGDQATGW CSTGCQAIVD TGTSLLTVPQ QFLSALLQAT GAQEDQYGQV bmy_00094T0/1-398 FLIGDQATGW CSQGCQAIVD TGTSLLTVPQ QFMSSLLQAT GAKEDQYGQF BACU017995/1-814 FLIGDQATGW CSQGCQAIVD TGTSLLTVPQ QFMSSLLQAT GAKEDQYGQF 351 400 ENSTTRP00000008893/1-389 LVDCNSIQSL PTLTFIINGV QFPLSPASYI LNYDDSFCML GVEPTYVPSQ ENSP00000362116/1-388 LVNCNSIQNL PSLTFIINGV EFPLPPSSYI LSN-NGYCTV GVEPTYLSSQ ENSBTAP00000004973/1-308 ---------- ---------- ---------- ---------- ---------- bmy_00094T0/1-398 LVDCSNIQSL PTLTFVINGV QFPLPPASYI LNNDDSFCMV GVEATYLPSQ BACU017995/1-814 LVDCSNIQSL PTLTFIINGV QFPLPPTSYI LNNDDSFCMV GVEATYLPSQ 401 450 ENSTTRP00000008893/1-389 NGQPLWILGD VFLRSYYSVY DLGNNR---- ---------- ---------- ENSP00000362116/1-388 NGQPLWILGD VFLRSYYSVY DLGNNR---- ---------- ---------- ENSBTAP00000004973/1-308 ---------- ---------- ---------- ---------- ---------- bmy_00094T0/1-398 NGQPLWILGD VFLRSYYSVY DLGNNR---- ---------- ---------- BACU017995/1-814 NGQPLWILGD VFLRSYYSVY DLGNNRYIAG PLWSQFPWSP RKWAGLADTR 451 500 ENSTTRP00000008893/1-389 ---------- ---------- ---------- ---------- ---------- ENSP00000362116/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004973/1-308 ---------- ---------- ---------- ---------- ---------- bmy_00094T0/1-398 ---------- ---------- ---------- ---------- ---------- BACU017995/1-814 DPFHSCFPAL AGCSLRAGAA SYSALDSALG DPSAASPSVP GNLGTMGPGE 501 550 ENSTTRP00000008893/1-389 ---------- ---------- ---------- ---------- VGFATAV--- ENSP00000362116/1-388 ---------- ---------- ---------- ---------- VGFATAA--- ENSBTAP00000004973/1-308 ---------- ---------- ---------- ---------- ---------- bmy_00094T0/1-398 ---------- ---------- ---------- ---------- VGFATAA--- BACU017995/1-814 SPPKTGGCSS GTLPHLTLQL PLSSSHLNVY SGDPQVTTSL VGVTSSSCPA 551 600 ENSTTRP00000008893/1-389 ---------- ---------- ---------- ---------- ---------- ENSP00000362116/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004973/1-308 ---------- ---------- ---------- ---------- ---------- bmy_00094T0/1-398 ---------- ---------- ---------- ---------- ---------- BACU017995/1-814 DLTQKRELTD AESRALAKER QKKDNHNLIE RRRRFNINDR IKELGMLIPK 601 650 ENSTTRP00000008893/1-389 ---------- ---------- ---------- ---------- ---------- ENSP00000362116/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004973/1-308 ---------- ---------- ---------- ---------- ---------- bmy_00094T0/1-398 ---------- ---------- ---------- ---------- ---------- BACU017995/1-814 ANDLDVRWNK GTILKASVDY IRRMQKDLQK SRELENHSRR LEMTNKQLWL 651 700 ENSTTRP00000008893/1-389 ---------- ---------- ---------- ---------- ---------- ENSP00000362116/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004973/1-308 ---------- ---------- ---------- ---------- ---------- bmy_00094T0/1-398 ---------- ---------- ---------- ---------- ---------- BACU017995/1-814 RIQELEMQAR VHGLPTTSPS GMNMAELAQQ VVKQELPSEE GPREALLLGA 701 750 ENSTTRP00000008893/1-389 ---------- ---------- ---------- ---------- ---------- ENSP00000362116/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004973/1-308 ---------- ---------- ---------- ---------- ---------- bmy_00094T0/1-398 ---------- ---------- ---------- ---------- ---------- BACU017995/1-814 EVPDPEPLPA LPAQAQLPPP AQPAQPPSPF HHLDFSHSLS FGGGGNEGPP 751 800 ENSTTRP00000008893/1-389 ---------- ---------- ---------- ---------- ---------- ENSP00000362116/1-388 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000004973/1-308 ---------- ---------- ---------- ---------- ---------- bmy_00094T0/1-398 ---------- ---------- ---------- ---------- ---------- BACU017995/1-814 GYPEPLGPEH GSPFPNLSKK DLDLMLLDDS LLPLASDPLF STMSPEASKA 801 850 ENSTTRP00000008893/1-389 ---------- ----- ENSP00000362116/1-388 ---------- ----- ENSBTAP00000004973/1-308 ---------- ----- bmy_00094T0/1-398 ---------- ----- BACU017995/1-814 SSRRSSFSME EGDVL