KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:25:19 2014 Check: 00 .. Name: BACU015538/1-580 Len: 597 Check: 7628 Weight: 1.00 Name: ENSP00000363616/1-578 Len: 597 Check: 1135 Weight: 1.00 Name: ENSBTAP00000004969/1-578 Len: 597 Check: 9736 Weight: 1.00 Name: bmy_00579T0/1-596 Len: 597 Check: 9016 Weight: 1.00 Name: ENSTTRP00000016124/1-541 Len: 597 Check: 8415 Weight: 1.00 // 1 50 BACU015538/1-580 ----MVRPAR MAPRPTPPTT GSESRPCSTT PTTATWRXXX XX-------- ENSP00000363616/1-578 MPFRLLIPLG LLCALLPQHH GAPG-PDGSA PDPAHYR--- ---------- ENSBTAP00000004969/1-578 MLFRLLVPLG LLCALLPLHH GAPG-PDGTA PDPAHYR--- ---------- bmy_00579T0/1-596 MPFRLLVPFG LLCALLPLHH GAPG-PDGTA PDPAHYRPPT LTCSDPATGL ENSTTRP00000016124/1-541 ---------- ---------- ---------- ---------- ---------- 51 100 BACU015538/1-580 -----XXXXX XXXXXXXXXX XXXXXXXELR PLTCDGHDTW GSFSLTLIDA ENSP00000363616/1-578 -----ERVKA MFYHAYDSYL ENAFPFDELR PLTCDGHDTW GSFSLTLIDA ENSBTAP00000004969/1-578 -----ERVKA MFYHAYDSYL ENAFPYDELR PLTCDGHDTW GSFSLTLIDA bmy_00579T0/1-596 LAEIRERVKA MFYHAYDSYL ENAFPYDELR PLTCDGHDTW GSFSLTLIDA ENSTTRP00000016124/1-541 -----ARVKA MFYHAYDSYL ENAFPYDELR PLTCDGHDTW GSFSLTLIDA 101 150 BACU015538/1-580 LDTLLILGNV SEFQRVVEVL QDNVDFDIDV NASVFETNIR VVGGLLSAHL ENSP00000363616/1-578 LDTLLILGNV SEFQRVVEVL QDSVDFDIDV NASVFETNIR VVGGLLSAHL ENSBTAP00000004969/1-578 LDTLLILGNV SEFQRVVEVL QDNVDFDIDV NASVFETNIR VVGGLLSAHL bmy_00579T0/1-596 LDTLLILGNV SEFQRVVEVL QDNVDFDIDV NASVFETNIR VVGGLLSAHL ENSTTRP00000016124/1-541 LDTLLILGNV SEFQRVVEVL QDNVDFDIDV NASVFETNIR VVGGLLSAHL 151 200 BACU015538/1-580 LSKRAGVEVE AGWPCSGPLL RMAEEAARKL LPAFQTPTGM PYGTVNLLHG ENSP00000363616/1-578 LSKKAGVEVE AGWPCSGPLL RMAEEAARKL LPAFQTPTGM PYGTVNLLHG ENSBTAP00000004969/1-578 LSKKAGVEVE AGWPCSGPLL RMAEEAARKL LPAFQTPTGM PYGTVNLLHG bmy_00579T0/1-596 LSKRAGVEVE AGWPCSGPLL RMAEEAARKL LPAFQTPTGM PYGTVNLLHG ENSTTRP00000016124/1-541 LSKRAGVEVE AGWPCSGPLL RMAEEAARKL LPAFQTPTGM PYGTVN-LHG 201 250 BACU015538/1-580 VNPGETPVTC TAGIGTFIVE FATLSSLTGD PVFEDVARVA LMRLWESRSD ENSP00000363616/1-578 VNPGETPVTC TAGIGTFIVE FATLSSLTGD PVFEDVARVA LMRLWESRSD ENSBTAP00000004969/1-578 VNPGETPVTC TAGIGTFIVE FATLSSLTGD PVFEDVARVA LMRLWESRSD bmy_00579T0/1-596 VNLGETPVTC TAGIGTFIVE FATLSSLTGD PVFEDVARVA LMRLWESRSD ENSTTRP00000016124/1-541 VNPGETPVTC TAGIGTFIVE FATLSSLTGD PVFEDVARVA LMRLWESRSD 251 300 BACU015538/1-580 IGLVGNHIDV LTGKWVAQDA GIGAGVDSYF EYLVKGAILL QDKKLMAMFL ENSP00000363616/1-578 IGLVGNHIDV LTGKWVAQDA GIGAGVDSYF EYLVKGAILL QDKKLMAMFL ENSBTAP00000004969/1-578 IGLVGNHIDV LTGKWVAQDA GIGAGVDSYF EYLVKGAILL QDKKLMAMFL bmy_00579T0/1-596 IGLVGNHIDV LTGKWVAQDA GIGAGVDSYF EYLVKGAILL QDKKLMAMFL ENSTTRP00000016124/1-541 IGLVGNHIDV LTGKWVAQDA GIGAGVDSYF EYLVKGAILL QDKKLMAMFL 301 350 BACU015538/1-580 EYNKAIRNYT RFDDWYLWVQ MYKGTVSMPV FQSLEAYWPG LQTLIGDIDN ENSP00000363616/1-578 EYNKAIRNYT RFDDWYLWVQ MYKGTVSMPV FQSLEAYWPG LQSLIGDIDN ENSBTAP00000004969/1-578 EYNKAIRNYT RFDDWYLWVQ MYKGTVSMPV FQSLEAYWPG LQSLIGDIDN bmy_00579T0/1-596 EYNKAIRNYT RFDDWYLWVQ MYKGTVSMPV FQSLEAYWPG LQTLIGDIDN ENSTTRP00000016124/1-541 EYNKAIRNYT RFDDWYLWVQ MYKGTVSMPV FQSLEAYWPG LQTLIGDIDN 351 400 BACU015538/1-580 AMRTFLNYYT VWKQFGGLPE FYNIPQGYTV EKREGYPLRP ELIESAMYLY ENSP00000363616/1-578 AMRTFLNYYT VWKQFGGLPE FYNIPQGYTV EKREGYPLRP ELIESAMYLY ENSBTAP00000004969/1-578 AMRTFLNYYT IWKQFGGLPE FYNIPQGYTV EKREGYPLRP ELIESAMYLY bmy_00579T0/1-596 AMRTFLNYYT VWKQFGGLPE FYNIPQGYTV EKREGYPLRP ELIESAMYLY ENSTTRP00000016124/1-541 AMRTFLNYYT VWKQFGGLPE FYNIPQGYTV EKREGYPLRP ELIESAMYLY 401 450 BACU015538/1-580 RATGDPTVLE LGRDAVESIE KISKVECGFA TIKDLRDHKL DNRMESFFLA ENSP00000363616/1-578 RATGDPTLLE LGRDAVESIE KISKVECGFA TIKDLRDHKL DNRMESFFLA ENSBTAP00000004969/1-578 RATGDPTLLE LGRDAVESIE KISKVECGFA TIKDLRDHKL DNRMESFFLA bmy_00579T0/1-596 RATGDPTLLE LGRDAVESIE KISKVECGFA TIKDLRDHKL DNRMESFFLA ENSTTRP00000016124/1-541 RATGDPTLLE LGRDAVESIE KISKVECGFA TIKDLRDHKL DNRMESFFLA 451 500 BACU015538/1-580 ETVKYLYLLF DPTNFIHNNG STFDAVITPY GECILGAGGY IFNTEAHPID ENSP00000363616/1-578 ETVKYLYLLF DPTNFIHNNG STFDAVITPY GECILGAGGY IFNTEAHPID ENSBTAP00000004969/1-578 ETVKYLYLLF DPDNFIHNNG STFDAVITPY GECVLGAGGY IFNTEAHPID bmy_00579T0/1-596 ETVKYLYLLF DPTNFIHNNG STFDVVITPY GECILGAGGY IFNTEAHPID ENSTTRP00000016124/1-541 ETVKYLYLLF DPTNFIHNNG STFDAVITPY GECILGAGGY IFNTEAHPID 501 550 BACU015538/1-580 PAALHCCRRL KEEQWEVEDL MREFYSLKRN RSRFQKKTMS SGPWEPPAGP ENSP00000363616/1-578 PAALHCCQRL KEEQWEVEDL MREFYSLKRS RSKFQKNTVS SGPWEPPARP ENSBTAP00000004969/1-578 PAALHCCRRL KEEQWEVEDL MREFYSLKRK RSRFQKKTMS SGPWEPPTGP bmy_00579T0/1-596 PAALHCCRRL KEEQWEVEDL MREFYSLKRN RSRFQKKTMS SGPWEPPAGP ENSTTRP00000016124/1-541 PAALHCCRRL KEEQWEVEDL MREFYSLKRN RSRFQKKTMS SGPWEPPTGP 551 600 BACU015538/1-580 GTLSSPENYD RAREKKPAKQ KIPLLSCPSQ PFTSKLALLG QVFLDSS ENSP00000363616/1-578 GTLFSPENHD QARERKPAKQ KVPLLSCPSQ PFTSKLALLG QVFLDSS ENSBTAP00000004969/1-578 GTFSSPENHE QAREKKPAKQ KIPLLSCPSQ PFTSKLALLG QVFLDSS bmy_00579T0/1-596 GTMSSPENYD RAREKKPAKQ KIPLLSCPSQ PFTSKLALLG QVFLDSS ENSTTRP00000016124/1-541 GTLSSPENYD RAREKKPTKQ KIPLLSCPSQ PFTSKLALLG QVFLDSS