KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:35 2014 Check: 00 .. Name: ENSP00000381758/1-739 Len: 803 Check: 341 Weight: 1.00 Name: ENSBTAP00000004690/1-741 Len: 803 Check: 9791 Weight: 1.00 Name: ENSTTRP00000006535/1-614 Len: 803 Check: 9383 Weight: 1.00 Name: bmy_00033T0/1-542 Len: 803 Check: 2576 Weight: 1.00 Name: BACU015816/1-718 Len: 803 Check: 1002 Weight: 1.00 // 1 50 ENSP00000381758/1-739 MLYSPGPSLP ESAESLDGSQ EDKPRGSCAE PTFTDTGMVA HINNSRLKAK ENSBTAP00000004690/1-741 CLHAPPDPRP EVASSHISHA SGKASASPSP ETVFDRGIAA RISQNRLKAK ENSTTRP00000006535/1-614 ---------P EAAEN-VGRW GHRPRG-LGE TVFTNKGMAA HISQNRLKAK bmy_00033T0/1-542 ---------- ---------- ---------- ---------- ---------- BACU015816/1-718 ---------- ---------- ---------- -------MAA HISQNRLKAK 51 100 ENSP00000381758/1-739 GVGQHDNAQN FGNQSFEELR AACLRKGELF EDPLFPAEPS SLGFKDLGPN ENSBTAP00000004690/1-741 GMGQHHNAQN YNNQSFEELR ALCLRRGELF EDPFFPAEPT SLGFKELAPN ENSTTRP00000006535/1-614 GMGQHHNAQN YNNQSFEELQ ALCLRKGQLF KDPFFPAEPS SLGFKELGPN bmy_00033T0/1-542 ---------N YNNQSFEELR ALCLRKGELF KDPFFPAEPS SLGFKELGPN BACU015816/1-718 GMGQHHNALN YNNQSFEELR ALCLRKGELF KDPFFPAEPS SLGFKELGPN 101 150 ENSP00000381758/1-739 SKNVQNISWQ RPKDIINNPL FIMDGISPTD ICQGILGDCW LLAAIGSLTT ENSBTAP00000004690/1-741 SKHVQNISWQ RPSQITSNPQ FIVNGVSPTD ICQGVLGDCW LLAAIGSLTA ENSTTRP00000006535/1-614 SKHVQNISWQ RPRQITSNPQ FIVNGVSPTD ICQGVLGDCW LLAAIGSLTV bmy_00033T0/1-542 SKHVQNISWQ RPSQITSNPQ FIVNGVSPTD ICQGVLGDCW LLAAIGSLTV BACU015816/1-718 SKH------- ---QITSNPQ FIVNGVSPTD ICQGVLGDCW LLAAIGSLTA 151 200 ENSP00000381758/1-739 CPKLLYRVVP RGQSFKKNYA GIFHFQIWQF GQWVNVVVDD RLPTKNDKLV ENSBTAP00000004690/1-741 YPKLLSRVVP KGQSFKKNYA GIFHFQIWQF GEWMDVVVDD RLPTKNGKLV ENSTTRP00000006535/1-614 YPELLYRVVP RGQSFKKNYA GIFHFQIWQF GQWMDVVVDD RLPTKNGKLV bmy_00033T0/1-542 YPKLLYRVVP RGQSFKKNYA GIFHFQIWQF GQWVDVVVDD RLPTKNGKLV BACU015816/1-718 YPKLLYRVVP RGQSFKKNYA GIFHFQIWQF GQWVDVVVDD RLPTKNGKLV 201 250 ENSP00000381758/1-739 FVHSTERSEF WSALLEKAYA KLSGSYEALS GGSTMEGLED FTGGVAQSFQ ENSBTAP00000004690/1-741 FVHSAERTEF WSALLEKAYA KLNGSYEALS GGNTVEGFED FTGGVTQSFQ ENSTTRP00000006535/1-614 FVHSAERTEF WSALLEKAYA KLNGSYEALS GGNTVEGFED FTGGVTQSFQ bmy_00033T0/1-542 FVHSAECTEF WSALLEKAYA KLNGSYEALS GGSTVEGFED FTGG------ BACU015816/1-718 FVHSAECTEF WSALLEKAYA KLNGSYEALS GGNTVEGFED FTGG------ 251 300 ENSP00000381758/1-739 LQRPPQNLLR LLRKAVERSS LMG--CSIEV TSDSELESMT DKMLVRGHAY ENSBTAP00000004690/1-741 LQNPPRNLQR ILRKAVERSS LMGALCVLQV THEHELESLT QGMLVRGHAY ENSTTRP00000006535/1-614 LRKPPPNLLR MLRKAIERSS LMG--CSIEI NSQSDLESLT ERMLVKGHAY bmy_00033T0/1-542 ---------- ---------- ---------I NSQSDLESLT QRMLVRGHAY BACU015816/1-718 ---------- ---------- ---------I NSQSDLESLT QRMLVRGHAY 301 350 ENSP00000381758/1-739 SVTGLQDVHY RGKMETLIRV RNPWGRIEWN GAWSDSAREW EEVASDIQMQ ENSBTAP00000004690/1-741 SVTGLQDVSY QGRTETLIRV RNPWGRIEWN GAWSDNAKEW EEVAPDVQRQ ENSTTRP00000006535/1-614 SVTG-QDVLY RGRMETLIRV RNPWGRIEWN GAWSDNAKEW EEVAPDVQRQ bmy_00033T0/1-542 SVTGLQDVLY RGRMETLIRV RNPWGRIEWN GAWSDK---- ---------- BACU015816/1-718 SVTGLQDVLY RGRMETLIRV RNPWGRIEWN GAWSDNAKEW EEVAPDVQRQ 351 400 ENSP00000381758/1-739 LLHKTEDGEF WMSYQDFLNN FTLLEICNLT PDTLSGDYKS YWHTTFYEGS ENSBTAP00000004690/1-741 LLHRKEDGEF WMSYQDFLGN FTLLEICNVI PDTLSGDYKS CWHTTFYEGS ENSTTRP00000006535/1-614 LLHRKEDGEF V--------- ---------- ---------- ---------- bmy_00033T0/1-542 ---------- -MSYQDFLDN FTLLEICNLI PDTLCGDYKR CWHTTFYEGS BACU015816/1-718 LLHRKEDGEF WMSYQDFLDN FTLLEICNLI PDTLCGDYKR CWHTTFYEGS 401 450 ENSP00000381758/1-739 WRRGSSAGGC RNHPGTFWTN PQFKISLPEG DDPEDDAEGN VVVCTCLVAL ENSBTAP00000004690/1-741 WRRGSTAGGC RSYLDTFWTN PQFKICLPEK DDDIEDDEA- --VCTCLVAL ENSTTRP00000006535/1-614 ---------- ---------- -------PKE ---------- ---------- bmy_00033T0/1-542 WRRGSTAGGC RSYTDTFWTN PQFKISLPEE DDAPEDDEA- --VCTCLVAL BACU015816/1-718 WRKGSTAGGC RSYTDTFWTN PQFKISLPEE DDAPEDDEA- --VCTCLVAL 451 500 ENSP00000381758/1-739 MQKNWRHARQ QGAQLQTIGF VLYAVPKE-- ---------- ---------- ENSBTAP00000004690/1-741 MQKNWRRTRP HGAQLETIGF VIYSIPKE-- ---------- ---------- ENSTTRP00000006535/1-614 ---------- ---------- ---------- ---------- ---------- bmy_00033T0/1-542 MQKNWRRARP QGAQLQTIGF VIYS------ ---------- ---------- BACU015816/1-718 MQKNWRRARP QGAQLQTIGF VIYSVPKEVQ KTWGLILGRH PPCSWHVDGQ 501 550 ENSP00000381758/1-739 ---------- ------FQNI QDVHLKKEFF TKYQDHGFSE IFTNSREVSS ENSBTAP00000004690/1-741 ---------- ------FQNL QDVHLKKDFF VKYQDLGFSE IFTNSREVSS ENSTTRP00000006535/1-614 ---------- ------FQNL QDVHLKKDFF VKYQDLGFSE IFTNSREVSS bmy_00033T0/1-542 ---------- ------FQNL QDVHLKKDFF VKYQDLGFSE IFTNSREVSS BACU015816/1-718 GVEFGEGFWG PPGHVQFQNL QDVHLKKDFF VKYQDLGFSE IFTHSREVSS 551 600 ENSP00000381758/1-739 QLRLPPGEYI IIPSTFEPHR DADFLLRVFT EKHSESWELD EVNYAEQLQE ENSBTAP00000004690/1-741 QFQLPPGEYI IIPSTFEPHK DADFLLRVFT EKHSESWELD EANYAELLQE ENSTTRP00000006535/1-614 HLRLPPGEYI IIPSTLEPHK DADFLLRVFT EKHSESWELD EANIAELLQE bmy_00033T0/1-542 HLRLPPGEYI IIPSTFEPHK DADFLLR--- ---------- ---------- BACU015816/1-718 HLRLPPGEYI IIPSTLEPHK DADFLLRVFT EKHSESWELD EANFAELLQE 601 650 ENSP00000381758/1-739 EKVSEDDMDQ DFLHLFKIVA -GEGKEIGVY ELQRLLNRMA IKFKSFKTKG ENSBTAP00000004690/1-741 ESISETDIDQ DFVRLFHIVA GGEGKEIGMY ELQKLLNKVV SRFKNFKTKG ENSTTRP00000006535/1-614 ENISENDIDQ DFIRLFHIVA GGEDKEVGIY ELQKLLNKVF SEVKNLKTKG bmy_00033T0/1-542 ENISENDIDQ DFIRLFHIVA GGEDKEVGMY ELQKLLNKVV SKVKNLKTKG BACU015816/1-718 ENVSENDIDQ DFIRLFHIVA GGEDKEVGMY ELQKLLNKVV SKVKNLKTKG 651 700 ENSP00000381758/1-739 FGLDACRCMI NLMDKDGSGK LGLLEFKILW KKLKKWMDIF RECDQDHSGT ENSBTAP00000004690/1-741 FSLDVCRCMV NLLDKDGSGK LGLREFQVLW RKIKKWTDIF RECDQDQSGT ENSTTRP00000006535/1-614 FSLDVCRCMV NLLDKDGSGK LGLQEFQILW RKIKKWTDIF RECDQDHSGT bmy_00033T0/1-542 FSLDVCRCMV NLLD------ ---------- -------DIF RECDQDHSGT BACU015816/1-718 FSLDVCRCMV NLLDKDGSGK LGLQEFQILW RKIKKWTDIF RECDQDHSGT 701 750 ENSP00000381758/1-739 LNSYEMRLVI EKAGIKLNNK VMQVLVARYA DDDLIIDFDS FISCFLRLKT ENSBTAP00000004690/1-741 LNSYEMRLAV EKAGIKLNNK VTQVLVARYA NDSLIMEFDS FISCFLRLKA ENSTTRP00000006535/1-614 LNSYEMRLAI EKAGIKLNNK VTQVLVARYA NDEMIMDFDS FISCFLRLKA bmy_00033T0/1-542 LNSYEMRLAI EKAGIKLNNK VTQVLVARYA NDEMIMDFDS FISCFLRLKA BACU015816/1-718 LNSYEMRLAI EKAGIKLNNK VTQVLVARYA NDEMIMDFDS FISCFLRLKA 751 800 ENSP00000381758/1-739 MF-------- ---------- -----TFFLT MDPKNTGHIC LSLEQWLQMT ENSBTAP00000004690/1-741 MF-------- ---------- ---KTAYFLT MDPENTGQIS LDLNQWLQIT ENSTTRP00000006535/1-614 MF-------- ---------- -----TYFLT MDPNNTGQIC LNLNQWLQIT bmy_00033T0/1-542 MF-------- ---------- ---------- ---------- ---------- BACU015816/1-718 MFIGKGSCRP LTELPTLLPC LLLETAYFLT MDPNNTGQIC LNLNQWLQIT 801 850 ENSP00000381758/1-739 MWG ENSBTAP00000004690/1-741 MWG ENSTTRP00000006535/1-614 MWG bmy_00033T0/1-542 --- BACU015816/1-718 MWG