KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:24:00 2014 Check: 00 .. Name: ENSTTRP00000015092/1-856 Len: 862 Check: 2261 Weight: 1.00 Name: bmy_13775T0/1-584 Len: 862 Check: 4937 Weight: 1.00 Name: BACU011543/1-828 Len: 862 Check: 4590 Weight: 1.00 Name: ENSP00000322775/1-856 Len: 862 Check: 7162 Weight: 1.00 Name: ENSBTAP00000004463/1-830 Len: 862 Check: 8402 Weight: 1.00 // 1 50 ENSTTRP00000015092/1-856 MASADKNGES VSSVSSSRLQ SRKPPNLSIA IPPP--GTPD PSEQASMLPQ bmy_13775T0/1-584 MASADKNGES VSSVSSSRLQ SRKPPNLSIT IPLP--ETPA PSEQASMLPQ BACU011543/1-828 MASADENGES VSSVSSSRLQ SRKPPNLSIT IPPP--ETPA PSEQASVLPQ ENSP00000322775/1-856 MASADKNGGS VSSVSSSRLQ SRKPPNLSIT IPPPEKETQA PGEQDSMLPE ENSBTAP00000004463/1-830 MASDDKNGER VSSVSSSRLQ SRKPPNLSIT IPPP--ETSA PSEQASMLPQ 51 100 ENSTTRP00000015092/1-856 GLHIGPEQSQ PGIWAAGITA HAPARCPQRP RNPAFLKSVS LQEPRAQWQE bmy_13775T0/1-584 ---------- ---------- ---------V REQL------ ---------- BACU011543/1-828 ---------- ---------- ---------A REPS-LPAVS LQEPRARWQE ENSP00000322775/1-856 GFQNRRLKKS QPRTWAAHTT ACPPSFLPKR KNPAYLKSVS LQEPRSRWQE ENSBTAP00000004463/1-830 ---------- ---------- ---ESGGQRH RNPALLKSVS LQEPRGRWQE 101 150 ENSTTRP00000015092/1-856 GGSEKRPGFR RRQTSLSQSI RXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13775T0/1-584 --GARRPAI- S--------- ---------- ---------- ------HRCA BACU011543/1-828 GGSEKRPGF- RRQASLSHSI RKGAAQWFGV SGDWELKRQH WQRRSLHHCS ENSP00000322775/1-856 -SSEKRPGF- RRQASLSQSI RKGAAQWFGV SGDWEGQRQQ WQRRSLHHCS ENSBTAP00000004463/1-830 GSPEKRPGF- RRQASLSQSI RKGAAQWFGV SGDWELKRQH WQRRSLHHCS 151 200 ENSTTRP00000015092/1-856 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_13775T0/1-584 ---------- ---------- ---------- ---------- PMAPFGQFHF BACU011543/1-828 VRYGRLKASC QRDLELPSQE VPSFQGTESP RPCKMPKIVD PLARGRAFRH ENSP00000322775/1-856 MRYGRLKASC QRDLELPSQE APSFQGTESP KPCKMPKIVD PLARGRAFRH ENSBTAP00000004463/1-830 VRYGRLKASC QRDLELPSQE VPSFQDTESP KPCKMPKIVD PLARGRAFRH 201 250 ENSTTRP00000015092/1-856 XXX-XXXXXX XXXXXXXXXX XXXXXXXXXX XYSHLPHRKR ISVAHMSFQA bmy_13775T0/1-584 PEEGLLEPQL PCGP------ ---------- ---------- ---------- BACU011543/1-828 PDE-VDRPHA LHAPLTPGVL SLTSFTSVRS GYSHLPHRKR ISVAHMSFQA ENSP00000322775/1-856 PEE-MDRPHA PHPPLTPGVL SLTSFTSVRS GYSHLPRRKR MSVAHMSLQA ENSBTAP00000004463/1-830 PDE-VDRPHA PHPPLTPGVL SLTSFTSVRS GYSHLPRRKR ISVAHMSFQA 251 300 ENSTTRP00000015092/1-856 ATAFLKGRSV MDAAGQRCRV VKRSFAYPSF LEEDAVDGAE TFYSSFFSKE bmy_13775T0/1-584 -----AGRSV LDATGQQCRV VKRSFAYPSF LEEDA----- ---------E BACU011543/1-828 ATAFLKGRSV LDATGQRCRV VKRSFAYPSF LEEDAVDGAE TFYSSFFSKA ENSP00000322775/1-856 AAALLKGRSV LDATGQRCRV VKRSFAFPSF LEEDVVDGAD TFDSSFFSKE ENSBTAP00000004463/1-830 AAALLKGRSV LEATGQRSRV VKCSFAYPSS LEEDVVDGAE TFDSSFFSKE 301 350 ENSTTRP00000015092/1-856 EMSSVPDDVF ESPPLSASYF RGIPRSASPV SPEEVQIPLK ESDRAPVPAA bmy_13775T0/1-584 EMSSVPDDVF ESPPLSASYF RGIPRSASPV SPEEVQIPLR ESDRAPVPAA BACU011543/1-828 SMGSVPDDVF ESPPLSASYF RGIPRSASPV SPEEVQIPLK ESDRALVPAA ENSP00000322775/1-856 EMSSMPDDVF ESPPLSASYF RGIPHSASPV SPDGVQIPLK EYGRAPVPGP ENSBTAP00000004463/1-830 EMSSMPDDVF ESPPLSASYF RGIPHSASPV SPD--QIPLK ESSRAPVPPT 351 400 ENSTTRP00000015092/1-856 KRGKRIASKV KHFAFDRKKR HYGLGVVGNW L---NRSYRR SISSTVQRQL bmy_13775T0/1-584 KRGKRIAFKV KHFALDRKKR HYGLGVVGNW L---NRSYRR SISSTVQRQL BACU011543/1-828 KRGKRIASKV KHFALDRKKR HYGLGVVGNW LNXXNRSYRH SISSTVQRQL ENSP00000322775/1-856 RRGKRIASKV KHFAFDRKKR HYGLGVVGNW L---NRSYRR SISSTVQRQL ENSBTAP00000004463/1-830 KRGKRIASKV KHFAFDRKKR HYGLGVVGNW L---NRTYRR SISSTVQRQL 401 450 ENSTTRP00000015092/1-856 ESFDSHRPYF TYWLTFVHVI ITLLVICTYG IAPVGFAQHV TTQLVLRNRG bmy_13775T0/1-584 ESFDSHRPYF TYWLTFVHII ITLLVICTYG IAPVGFAQHV TTELVLRNKG BACU011543/1-828 ESFDSHRPYF TYWLTCVHII ITLLVICTYG IAPVGFAQHV TTELVLRNKG ENSP00000322775/1-856 ESFDSHRPYF TYWLTFVHVI ITLLVICTYG IAPVGFAQHV TTQLVLRNKG ENSBTAP00000004463/1-830 ESFDSHRPYF TYWLTFVHVI ITLLVIGTYG IAPVGFAQHI TTQLVLRNKG 451 500 ENSTTRP00000015092/1-856 VYESMKYIQQ ENFWIGPSSI DLIHLGAKFS PCIRKDQQIE QLVLRERDLE bmy_13775T0/1-584 VYESVKCIQQ ENFWIGPSSI DLIHLGAKFS PCIRKDQQIK QLVLRERELE BACU011543/1-828 VYESVKCIQQ ENFWIGPSSI DLIHLGAKFS PCIRKDRQIE RLVLRERDLE ENSP00000322775/1-856 VYESVKYIQQ ENFWVGPSSI DLIHLGAKFS PCIRKDGQIE QLVLRERDLE ENSBTAP00000004463/1-830 VYESVKYIQQ ENFWIGPSSI DLIHLGAKFS PCIRKDQQIE QLVLRERDLE 501 550 ENSTTRP00000015092/1-856 RDSGCCVQND HSGCIQTLQQ DCSETLATFV KWQDDTGPPM DKSALGQKRT bmy_13775T0/1-584 RDSGCCVQND HSGCIQTQEQ DC-------- ---------- --SGLGPSRI BACU011543/1-828 RDSGCCVQND HSGCIQTQEQ DCSETLATFV KWRDDTGPPM DKSALGQKRT ENSP00000322775/1-856 RDSGCCVQND HSGCIQTQRK DCSETLATFV KWQDDTGPPM DKSDLGQKRT ENSBTAP00000004463/1-830 RDSGCCVQND RSGCIQTQRK DCSETLATFV KWQDDTGPPM DKSDLGQKRT 551 600 ENSTTRP00000015092/1-856 SGAVCNQDPR ICEEPASSGA HIWPDDITKW PICTEQAKSN RSGFPHMDCQ bmy_13775T0/1-584 PGTDCHALTH RC-------- -------TAW TRCVG----- ---------- BACU011543/1-828 SGAVCNQDPR TCEEPASSGA HIWPDDITKW PICTEQTRSN RSGFPHMDCQ ENSP00000322775/1-856 SGAVCHQDPR TCEEPASSGA HIWPDDITKW PICTEQARSN HTGFLHMDCE ENSBTAP00000004463/1-830 SGAVCNQDPR TCEEPASSGA HIWPDDITKW PICTEQAKSN RSGFPHMDCQ 601 650 ENSTTRP00000015092/1-856 IRGRPCCIGT KGSCEVTTRE YCEFVHGYFH EEATLCSQVH CLDKVCGLLP bmy_13775T0/1-584 -----CC--- ---------- ---------- PSSILRSQIS STGSGC---- BACU011543/1-828 IRGRPCCIGT KGSCEITTRE YCEFMHGYFH EEATLCSQVH CLDKVCGLLP ENSP00000322775/1-856 IKGRPCCIGT KGSCEITTRE YCEFMHGYFH EEATLCSQVH CLDKVCGLLP ENSBTAP00000004463/1-830 IRGRPCCIGT KGSCEITTRE YCEFMHGYFH EKATLCSQVH CLDKVCGLLP 651 700 ENSTTRP00000015092/1-856 FLNPEVPDQF YRLWLSLFLH AGVVHCLVSV IFQMTILRDL EKLAGWHRIA bmy_13775T0/1-584 ---------- ---LCSFTLG KSVVHCLVSV IFQMTILRDL EKLAGWHRIA BACU011543/1-828 FLNPEVPDQF YRLWLSLFLH AGVVHCLVSV IFQMTILRDL EKLAGWHRIA ENSP00000322775/1-856 FLNPEVPDQF YRLWLSLFLH AGVVHCLVSV VFQMTILRDL EKLAGWHRIA ENSBTAP00000004463/1-830 FLNPEVPDQF YRLWLSLFLH AGVIHCLVSV IFQMTILRDL EKLAGWHRIS 701 750 ENSTTRP00000015092/1-856 IIFILSGITG NLASAIFLPY RAEVGPAGSQ FGLLACLFVE LFQSWQLLER bmy_13775T0/1-584 IIFILSGITG NLASAIFLPY RAEVGPAGSQ FGLLACLFVE LFQSWQLLER BACU011543/1-828 IIFVLSGITG NLASAVFLPY RAEVGPAGSQ FGLLACLFVE LFQSWQLLER ENSP00000322775/1-856 IIFILSGITG NLASAIFLPY RAEVGPAGSQ FGLLACLFVE LFQSWPLLER ENSBTAP00000004463/1-830 IIFILSGITG NLASALFLPY RAEVGPAGSQ FGLLACLFVE LFQSWQLLER 751 800 ENSTTRP00000015092/1-856 PWKAFLNLSA IVLFLFICGL LPWIDNIAHI FGFLSGLLLA FAFLPYITFG bmy_13775T0/1-584 PWKAFLNLSA IVLFLFICGL LPWIDNIAHI FGFLSGLLLA FAFLPYITFG BACU011543/1-828 PWKAFLNLSA IVLFLFICGL LPWIDNIAHI FGFLSGLLLA FAFLPYITFG ENSP00000322775/1-856 PWKAFLNLSA IVLFLFICGL LPWIDNIAHI FGFLSGLLLA FAFLPYITFG ENSBTAP00000004463/1-830 PWKAFLNLSA IVLFLFICGL LPWIDNIAHI FGFLSGLLLA FAFLPYITFG 801 850 ENSTTRP00000015092/1-856 TSDKYRKRAL ILVSLLVFAG LFASLVIWLY VYPIHWPWIE YLTCFPFTSH bmy_13775T0/1-584 TSDKYRKRAL ILVSLLVFAG LFTSLVIWLY VYPIHWPWIE YLTCFPFTSR BACU011543/1-828 TSDKYRKRAL ILVSLLVFAG LFTSLVIWLY VYPIHWPWIE YLTCFPFTSH ENSP00000322775/1-856 TSDKYRKRAL ILVSLLAFAG LFAALVLWLY IYPINWPWIE HLTCFPFTSR ENSBTAP00000004463/1-830 TSDKYRKRAL ILVSLVVFAG LFASLVIWLY IYPIHWPWVE YLTCFPFTSR 851 900 ENSTTRP00000015092/1-856 FCEKYELDQV LH bmy_13775T0/1-584 FCEKYELVQV LH BACU011543/1-828 FCEKYELDQV LH ENSP00000322775/1-856 FCEKYELDQV LH ENSBTAP00000004463/1-830 FCEKYELDQV LH