KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:47 2014 Check: 00 .. Name: BACU006778/1-232 Len: 333 Check: 7079 Weight: 1.00 Name: bmy_13960T0/1-315 Len: 333 Check: 9961 Weight: 1.00 Name: ENSP00000367770/1-331 Len: 333 Check: 162 Weight: 1.00 Name: ENSTTRP00000008783/1-331 Len: 333 Check: 9075 Weight: 1.00 Name: ENSBTAP00000004376/1-331 Len: 333 Check: 9414 Weight: 1.00 // 1 50 BACU006778/1-232 MRPAF--AVG LVFAGCCSNV IFLELLARKH PGCGNIVTFA QFLFIAVEGF bmy_13960T0/1-315 MSEEFFCLVD LLLTVTVEDS PAL----KKH PGCGNIVTFA QFLFIAVEGF ENSP00000367770/1-331 MRPAL--AVG LVFAGCCSNV IFLELLARKH PGCGNIVTFA QFLFIAVEGF ENSTTRP00000008783/1-331 MRPAF--AVG LVFAGCCSNV IFLELLVRKH PGCGNIVTFA QFLFIAVEGF ENSBTAP00000004376/1-331 MRPAF--AVG LVFAGCCSNV IFLELLARKH PGCGNIVTFA QFLFIAVEGF 51 100 BACU006778/1-232 LFEADLGRKH PVIPIRYYAV MVTMFFTVSV VNNYALNLNI AMPLHMIFRS bmy_13960T0/1-315 LFEADLGRKH PVIPIRYYAI MVTMFFTVSV VNNYALNLNI AMPLHMIFRS ENSP00000367770/1-331 LFEADLGRKP PAIPIRYYAI MVTMFFTVSV VNNYALNLNI AMPLHMIFRS ENSTTRP00000008783/1-331 LFEADLGRKH PAIPIRYYAI MVTMFFTVSV VNNYALNLNI AMPLHMIFRS ENSBTAP00000004376/1-331 LFEADLGRKR PAIPIRYYAV MVTMFFTVSV VNNYALNLNI AMPLHMIFRS 101 150 BACU006778/1-232 ---------- ---------- -------IQC IQIY------ ---------- bmy_13960T0/1-315 GSLIANMILG IIILKKRYSV FKYTSIALVS VGIFICTFMS AKQVTSQSSS ENSP00000367770/1-331 GSLIANMILG IIILKKRYSI FKYTSIALVS VGIFICTFMS AKQVTSQSSL ENSTTRP00000008783/1-331 GSLIANMILG IIILKKRYSV FKYTSIALVS VGIFICTFMS AKQVTSQSSS ENSBTAP00000004376/1-331 GSLIANMILG IIILKKRYSI FKYTSIALVS VGIFVCTFMS AKQVTSQSSS 151 200 BACU006778/1-232 ---------- ---------- ---------- ---------- ---------- bmy_13960T0/1-315 S--------- -----IGALT FALLMSARMG IFQETLYKQF GKHSKEALFY ENSP00000367770/1-331 SENDGFQAFV WWLLGIGALT FALLMSARMG IFQETLYKRF GKHSKEALFY ENSTTRP00000008783/1-331 GENDGFQAFA WWFLGIGALT FALLMSARMG IFQETLYKQF GKHSKEALFY ENSBTAP00000004376/1-331 TENDGFQAFA WWLLGIGALT FALLMSARMG IFQETLYKQF GKHSKEALFY 201 250 BACU006778/1-232 ---LHCPG-- -VCGDIYLHF HVSKAGELYQ VPVVGVIVPI MWFYLLMNVI bmy_13960T0/1-315 NHALPLPGFI FLASDIYDHA VLFNNSELYQ VPVVGVIVPI MWFYLLMNVI ENSP00000367770/1-331 NHALPLPGFV FLASDIYDHA VLFNKSELYE IPVIGVTLPI MWFYLLMNII ENSTTRP00000008783/1-331 NHALPLPGFI FLASDIYDHA VLFNNSELYQ VPVVGVIVPI MWFYLLMNVI ENSBTAP00000004376/1-331 NHALPLPGFI FLASDIYDHA VLFNNSELYQ VPVVGVTVPI MWFYLLMNVI 251 300 BACU006778/1-232 TQYVCIWGVF ILTTECASLT VTLVVTLRKF VSLIFSILYF QNPFTLWHWL bmy_13960T0/1-315 TQYVCIWGVF ILTTECASLT VTLVVTLRKF VSLVFSILYF QNPFTLWHWL ENSP00000367770/1-331 TQYVCIRGVF ILTTECASLT VTLVVTLRKF VSLIFSILYF QNPFTLWHWL ENSTTRP00000008783/1-331 TQYVCIRGVF ILTTECASLT VTLVVTLRKF VSLIFSILYF QNPFTRWHWL ENSBTAP00000004376/1-331 TQYVCIRGVF ILTTECASLT VTLVVTLRKF VSLIFSILYF QNPFTLWHWL 301 350 BACU006778/1-232 GTLFVFTGTL MYTEVWNNLG TTKGQPQKEA KKN bmy_13960T0/1-315 GTLFVFIGTL MYTEVWNNLG TTKGQPQKEA KKN ENSP00000367770/1-331 GTLFVFIGTL MYTEVWNNLG TTKSEPQKDS KKN ENSTTRP00000008783/1-331 GTLFVFIGTL MYTEVWNTLG ATKGQPQKEA KKS ENSBTAP00000004376/1-331 GTLFVFIGTL MYTEVWNNLG ATKGQPQKEE KKN