KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:23:33 2014 Check: 00 .. Name: ENSP00000333947/1-561 Len: 561 Check: 645 Weight: 1.00 Name: ENSBTAP00000004287/1-561 Len: 561 Check: 646 Weight: 1.00 Name: ENSTTRP00000006865/1-560 Len: 561 Check: 7638 Weight: 1.00 Name: bmy_20440T0/1-397 Len: 561 Check: 7882 Weight: 1.00 Name: BACU004731/1-561 Len: 561 Check: 409 Weight: 1.00 // 1 50 ENSP00000333947/1-561 MRHCINCCIQ LLPDGAHKQQ VNCQGGPHHG HQACPTCKGE NKILFRVDSK ENSBTAP00000004287/1-561 MRHCINCCIQ LSPDDVQTQQ VSCRGSSHHG RQECPVCKAE NKIVFRVDGK ENSTTRP00000006865/1-560 MRHCINCCIQ LLPDEAHTQQ VSCRGGPHHS RQECPMCKGE NKIVFRVDGK bmy_20440T0/1-397 MRHCINCCIQ LLPDEAHTQQ VSCRGGPHHS RQECPMCKGE NKIVFRVDGK BACU004731/1-561 MRHCINCCIQ LLPDEAHTQQ VSCRGGPHHS RQECPMCKGE NKIVFRVDGK 51 100 ENSP00000333947/1-561 QMNLLAVLEV RTEGNENWGG FLRFKKGKRC SLVFGLIIMT LVMASYILSG ENSBTAP00000004287/1-561 QMNLLAVLEV RADGNESWGG FLRFKKGKRC SLIFGLIIMT LVMASYILSG ENSTTRP00000006865/1-560 QMNLLAVLEV RAEGNESWSG FLRFKKGKRC SLVFGLIIMT LVMASYILSG bmy_20440T0/1-397 QMNLLAVLEV RAEGNESWSG FLRFKKGKRC SLVFGLIIMT LVMASYILSG BACU004731/1-561 QMNLLAVLEV RAEGNESWSG FLRFKKGKRC SLVFGLIIMT LVMASYILSG 101 150 ENSP00000333947/1-561 AHQELLISSP FHYGGFPSNP SLMDSENPSD TKEHHHQSSV NNISYMKDYP ENSBTAP00000004287/1-561 VHQELLISSP FHYGAFPSNP SLMEGENPSD AKEHHHQSSV NNISYMKDYP ENSTTRP00000006865/1-560 VHQELLISSP FHYGALPSNP SLMDGENPSD TKEHHHQPSV NNISYVKDDP bmy_20440T0/1-397 VHQELLISSP FHYGALPSNP SLMDGXNPSD TKEHHHQPSV NNISYVKDYP BACU004731/1-561 VHQELLISSP FHYGALPSNP SLMDGENPSD TKEHHHQPSV NNISYVKDYP 151 200 ENSP00000333947/1-561 SIKLIINSIT TRIEFTTRQL PDLEDLKKQE LHMFSVIPNK FLPNSKSPCW ENSBTAP00000004287/1-561 SIKLIINSIT SRIEFTTRQL PDVEDLKKQE LHMFSVIPHK FLPNSKSPCW ENSTTRP00000006865/1-560 SIKLIISSIT ARIEFTTRQL PDVEDL-MHE LHMFSVIPHK FLPNSKSPCW bmy_20440T0/1-397 SIKLIINSIT ARIEFTTRQL PDVEDLKKQE LHMFSVIPHK FLPNSKSPCW BACU004731/1-561 SIKLIINSIA ARIEFTTRQL PDVEDLKKQE LHMFSVIPHK FLPNSKSPCW 201 250 ENSP00000333947/1-561 YEEFSGQNTT DPYLTNSYVL YSKRFRSTFD ALRKAFWGHL AHAHGKHFRL ENSBTAP00000004287/1-561 YEEFTGRNTT DPYLTNSYVL YSKRFRSTFD TLRKAFWGHL SHAHGKHFRL ENSTTRP00000006865/1-560 YEEFTGRNTT DPYLTNSYVL YSKRFRSTFD ALRKAFWGHL SHAHGKHFRL bmy_20440T0/1-397 YEEFTGRNTT DPYLTNSYVL YSKRFRATFD ALRKAFWGHL SHAHGKHFRL BACU004731/1-561 YEEFTGRNTT DPYLTNSYVL YSKRFRATFD ALRKAFWGHL SHAHGKHFRL 251 300 ENSP00000333947/1-561 RCLPHFYIIG QPKCGTTDLY DRLRLHPEVK FSAIKEPHWW TRKRFGIVRL ENSBTAP00000004287/1-561 RCLPHFYIIG QPKCGTTDLY DRLRLHPEVK FSAIKEPHWW TRKRFGIVRL ENSTTRP00000006865/1-560 RCLPHFYIIG QPKCGTTDLY DRLRLHPEVK FSAIKEPHWW TRKRFGIVRL bmy_20440T0/1-397 RCLPHFYIIG QPKCGTTDLY DRLRLHPEVK FSAIKEPHWW TRKRFGIVRL BACU004731/1-561 RCLPRFYIIG QPKCGTTDLY DRLRLHPEVK FSAIKEPHWW TRKRFGIVRL 301 350 ENSP00000333947/1-561 RDGLRDRYPV EDYLDLFDLA AHQIHQGLQA SSAKEQSKMN TIIIGEASAS ENSBTAP00000004287/1-561 RDGLRDRYPV EDYLDLFDLA AHQIHQGLQA SAAKEPSKMN RIIIGEASAS ENSTTRP00000006865/1-560 RDGLRDRYPV EDYLDLFDLA AHQIHQGLQA SSAKEQSKMN RIIIGEASAS bmy_20440T0/1-397 RDGLRDRYPV EDYLDLFDLA AHQIHQGLQA SSAKEQSKMN RIIIGEASAS BACU004731/1-561 RDGLRDRYPV EDYLDLFDLA AHQIHQGLQA SSAKEQSKTN SIIIGEASAS 351 400 ENSP00000333947/1-561 TMWDNNAWTF FYDNSTDGEP PFLTQDFIHA FQPNARLIVM LRDPVERLYS ENSBTAP00000004287/1-561 TMWDNNAWTL FYDNGTDGEP PFLTQDFIHA FQPDAKLIVM LRDPVERLYS ENSTTRP00000006865/1-560 TMWDNNAWTF FYDNSTDGEP PFLTQDFIHA FQPDVKLIVM LRDPVERLYS bmy_20440T0/1-397 TMWDNNAWTF FYDNSTDGEP PFLTQDFIHA FQPDAKLIVM LRDPVER--- BACU004731/1-561 TMWDNNAWTF FYDNSTDGEP PFLTQDFIHA FQPDAKLIVM LRDPVERLYS 401 450 ENSP00000333947/1-561 DYLYFASSNK SADDFHEKVT EALQLFENCM LDYSLRACVY NNTLNNAMPV ENSBTAP00000004287/1-561 DYLYFASSNK SADDFHEKVT EALQLFENCM LDYSLRACVY NNTLNNAMPV ENSTTRP00000006865/1-560 DYLYFASSNK SADDFHEKVT EALQLFETCV LGYSLRACVY NNTLNNAMPV bmy_20440T0/1-397 ---------- ---------- ---------- ---------- ---------- BACU004731/1-561 DYLYFASSNK SADDFHEKVT EALQLFETCM LGYSLRACVY NNTLNNAMPV 451 500 ENSP00000333947/1-561 RLQVGLYAVY LLDWLSVFDK QQFLILRLED HASNVKYTMH KVFQFLNLGP ENSBTAP00000004287/1-561 RLQVGLYAVY LLDWLTVFNK EQFLILRLED HASNVKDTMH RVFQFLSLGP ENSTTRP00000006865/1-560 RLQVGLYAVY LLDWLTVFNK EQFLILRLED HASNVKHTMH RVFQFLSLGP bmy_20440T0/1-397 ---------- ---------- ---------- ---------- ---------- BACU004731/1-561 RLQVGLYAVY LLDWLTVFNK EQFLILRLED HASNVKYTMH RVFQFLNLGP 501 550 ENSP00000333947/1-561 LSEKQEALMT KSPASNARRP EDRNLGPMWP ITQKILRDFY RPFNARLAQV ENSBTAP00000004287/1-561 LSEKQEALMT KSPASNTRRP EDRDLGPMWP VTQRLLRDFY GPFNARLAQV ENSTTRP00000006865/1-560 LSEKQEALMT KSPASNARRP EDRNLGPMWP VTQRLLRDFY GPFNARLAQV bmy_20440T0/1-397 ---------- ---------- ---------- ---------- ---------- BACU004731/1-561 LSEKQEALMT KSPASNARRP EDRNLGPMWP VTQRLLRDFY GPFNARLAQV 551 600 ENSP00000333947/1-561 LADEAFAWKT T ENSBTAP00000004287/1-561 LADEAFLWRK T ENSTTRP00000006865/1-560 LADEAFLWKK T bmy_20440T0/1-397 ---------- - BACU004731/1-561 LADEAFLWKK T