KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:52 2014 Check: 00 .. Name: ENSBTAP00000004035/1-1061 Len: 1064 Check: 4294 Weight: 1.00 Name: ENSP00000217086/1-1053 Len: 1064 Check: 2547 Weight: 1.00 Name: ENSTTRP00000007329/1-1005 Len: 1064 Check: 2991 Weight: 1.00 Name: bmy_00263T0/1-993 Len: 1064 Check: 668 Weight: 1.00 Name: BACU011321/1-953 Len: 1064 Check: 4196 Weight: 1.00 // 1 50 ENSBTAP00000004035/1-1061 MSRRKQAKPQ HINSEEDQGE RQPQQPAPEC ADAAPAAPAA GAPGAPMNYL ENSP00000217086/1-1053 MSRRKQAKPQ HINSEEDQGE QQPQQQTPEF ADAAPAAPAA GELGAPVNHP ENSTTRP00000007329/1-1005 ---------- ---------- ---------- ---------- ----TPMNPP bmy_00263T0/1-993 ---------- ---------- ---------- ---------- ------MNPP BACU011321/1-953 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000004035/1-1061 GGRGNDELNG DGAGIKRPRR EETHVCEKCC AEFFSFSEFL DHKKNCTKTP ENSP00000217086/1-1053 G--NDEVASE DEATVKRLRR EETHVCEKCC AEFFSISEFL EHKKNCTKNP ENSTTRP00000007329/1-1005 G--SGDDVNV DGAGIKRPRR EETHICEKCC AEFFSFSEFL DHKKNRTKHP bmy_00263T0/1-993 G--SGDDVNV DGAGIKRPRR EETHICEKCC AEFFSFSEFL DHKKNCTKNP BACU011321/1-953 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000004035/1-1061 PVLILKDSEG PMSSEDLSGT VLSPQPPSPG RREGHRDNGS GGGAPGDLRE ENSP00000217086/1-1053 PVLIMNDSEG PVPSEDFSGA VLSHQPTSPG SKDCHREN-- -GGSSEDMKE ENSTTRP00000007329/1-1005 PVLIMNDSEG PVPSEDFSGA VLSHQSHSPS RKDGHRED-- -DGSSGDTKE bmy_00263T0/1-993 PVLIMNDSEG PVPSEDFSGA VLSHQPRSPS RKDGHRED-- -GGSSGDTRE BACU011321/1-953 ----MNDSEG PVPSEDFSGA LLSHQPRSPS RKDGHRED-- -GGSSGDTRE 151 200 ENSBTAP00000004035/1-1061 KPGAESVLYL KTEAALPPAP QDISYLPKGK VANTNVTLQA LRGTKVAVNQ ENSP00000217086/1-1053 KPDAESVVYL KTETALPPTP QDISYLAKGK VANTNVTLQA LRGTKVAVNQ ENSTTRP00000007329/1-1005 KP-AESVVYF KTEAALPPTP QDISYLPKGK VANTNVTRQA PRGTKAAVNR bmy_00263T0/1-993 KPGAESVVYL KTEAALPPTP QDISYLPKGK VANTNVTLQA LRGTKVAVNQ BACU011321/1-953 KPGAESVVYL KTEAALPPTP QDISYLPKGK VANTNVTLQA LRGTKVAVNQ 201 250 ENSBTAP00000004035/1-1061 RSADVPPAPV PGAGSLPWVL EQILCLQQQQ LQQIQLTEQI RVQVNMWASH ENSP00000217086/1-1053 RSADALPAPV PGANSIPWVL EQILCLQQQQ LQQIQLTEQI RIQVNMWASH ENSTTRP00000007329/1-1005 RSADAPPALL PGASSIPWVL EQILCLQQ-- -QQIQLAEQI CMQVNLWTSH bmy_00263T0/1-993 RGADAPPAPL PGASSIPWVL EQILCLQQQQ LQQIQLTEQI RVQVNLWASH BACU011321/1-953 RDTDAAPAPL PGASSIPWVL EQIQCLQQQQ LQQIQLTEQI RVQVNLWASH 251 300 ENSBTAP00000004035/1-1061 ALHAG--HAA DSLKTLGGHV SQQVSAAVAL LSQKAGSAGL PLDALKPAKL ENSP00000217086/1-1053 ALHSSG-AGA DTLKTLGSHM SQQVSAAVAL LSQKAGSQGL SLDALKQAKL ENSTTRP00000007329/1-1005 ALNSSGVAGA DSLKTLGGHV SQQVSAAVAL LSQKAGSPAL PLDTLKPAKL bmy_00263T0/1-993 ALHSSGVAGA DSLKTLGGHV SQQVSAAVAL LSQKAGSPAL PLDTLKPAKL BACU011321/1-953 ALHSSGVAGA DSLKTLGGHV SQQVSAAVAL LSQKVGSPAL PLNTLKPAKL 301 350 ENSBTAP00000004035/1-1061 PHANVPSAGG SASPGLPPFA LKPDATRVLP GVLSRLPGAL LPQAQGSVLF ENSP00000217086/1-1053 PHANIPSATS SLSPGLAPFT LKPDGTRVLP NVMSRLPSAL LPQAPGSVLF ENSTTRP00000007329/1-1005 PHTSIPSAAS SVSPGLTPFA LKPDGTRVLP NVLSRLPGAL LPQAPGSVLF bmy_00263T0/1-993 PHTSIPSAAS SVSPGLTPFA LKPDGTRVLP NVLSRLPGAL LPQAPGSVLF BACU011321/1-953 PHTSIPSTAS SVSPGLTPFA LKPDGTRVLP NVLSHLPGAL LPQAPGSVLF 351 400 ENSBTAP00000004035/1-1061 QSPFSAVALD PSKKGKGKPP SVSPVEVKLK DE-ALCRHKC KYCSKVFGTD ENSP00000217086/1-1053 QSPFSTVALD TSKKGKGKPP NISAVDVKPK DEAALYKHKC KYCSKVFGTD ENSTTRP00000007329/1-1005 QSPFSAVALD PSKKGKGKPP SVSPIDVKPK DE-VLYKHKC KYCSKVFGTD bmy_00263T0/1-993 QSPFSAVALD PSKKGKGKPP SVSPVDVKPK DE-VLYKHKC KYCSKVFGTD BACU011321/1-953 QSPFSAVALD PSKKGKGKPP SVSPVDVKPK DE-VLYKHKC KYCSKVFGTD 401 450 ENSBTAP00000004035/1-1061 SSLQIHLRSH TGERPFVCSV CGHRFTTKGN LKVHFHRHPQ VKANPQLFAD ENSP00000217086/1-1053 SSLQIHLRSH TGERPFVCSV CGHRFTTKGN LKVHFHRHPQ VKANPQLFAE ENSTTRP00000007329/1-1005 SSLQIHLRSH TGERPFVCSV CGHRFTTKGN LKVHFHRHPQ VKANPQLFAE bmy_00263T0/1-993 SSLQIHLRSH TGERPFVCSV CGHRFTTKGN LKVHFHRHPQ VKANPQLFAE BACU011321/1-953 SSLQIHLRSH TGERPFVCSV CGHRFTTKGN LKVHFHRHPQ VKANPQLFAE 451 500 ENSBTAP00000004035/1-1061 FHDKTAVGGG LPFALAGPVP LEEAGLSLDS KPALAAGTPS VVGLAQNLPS ENSP00000217086/1-1053 FQDKVAAGNG IPYALSVPDP IDEPSLSLDS KPVLVTTS-- -VGLPQNLSS ENSTTRP00000007329/1-1005 FHDKMAAGSG LPYALSGPVP VDESGLSLDN KPVLATGTPN -VGLSQNLSS bmy_00263T0/1-993 FHDKMAAGSG LPYALSGPVP IDESGLSLDN KPVLATGTPN -VGLPQNLSS BACU011321/1-953 FHDKMAAGSG LPYALSGPVP VDESGLSLDN KPVLATGTPN -VGLPQNLSS 501 550 ENSBTAP00000004035/1-1061 GPHPKDVAGG PLPGDLQPGP SPESEDGSIL PGVGPTHPSP RVGGFPGGGP ENSP00000217086/1-1053 GTNPKDLTGG SLPGDLQPGP SPESEGGPTL PGVGPNYNSP RAGGFQGSGT ENSTTRP00000007329/1-1005 GTNSKDLMGG PLPSDLQPGP SPESEDGCIL PGVGPNLNSP RVGGFQGSGT bmy_00263T0/1-993 GTNPKDLMGG PLPNDLQPGP SPESEDGSIL PGVGLNHNSP RVGAFQGSGT BACU011321/1-953 GTNPKDLMGG PLPSDLQPAP SPESEDGSIL PGVGLNHNSP RVGAFQGSGT 551 600 ENSBTAP00000004035/1-1061 PEPGSETLKL QRLVENIDKA TTDPNECLIC HRVLSCQSSL KMHYRTHTGE ENSP00000217086/1-1053 PEPGSETLKL QQLVENIDKA TTDPNECLIC HRVLSCQSSL KMHYRTHTGE ENSTTRP00000007329/1-1005 PEPGSETLKL QQLVENIDKA TTDPNECLIC HRVLSCQSSL KMHYRTHTGE bmy_00263T0/1-993 PEPGSETLKL QQLVENIDKA TIDPNECLIC RRVLSCQSSL KMHYRTHTGE BACU011321/1-953 PEPGSETLKL QQLVENIDKA TIDPNECLIC RRVLSCQSSL KMHYRTHTGE 601 650 ENSBTAP00000004035/1-1061 RPFPCKVCGR AFSTKGNLKT HLGVHRTSAS VKTQHSCPIC QKKFTNAVLL ENSP00000217086/1-1053 RPFQCKICGR AFSTKGNLKT HLGVHRTNTS IKTQHSCPIC QKKFTNAVML ENSTTRP00000007329/1-1005 RPFQCKICGR AFSTKGNLKT HLGVHRTNTS IKTQHSCPIC QKKFTNAVML bmy_00263T0/1-993 RPFQCKICGR AFSTKGNLKT HLGVHRTNTS IKTQHSCPIC QKKFTNAVML BACU011321/1-953 RPFQCKICGR AFSTKGNLKT HLGVHRTNTS IKTQHSCPIC QKKFTNAVML 651 700 ENSBTAP00000004035/1-1061 QQHIRMHMGG QIPNTPLPES PCEFAGPEPS AAGENGSPGA PAHDGVMEAI ENSP00000217086/1-1053 QQHIRMHMGG QIPNTPLPEN PCDFTGSEPM TVGENGSTGA ICHDDVIESI ENSTTRP00000007329/1-1005 QQHIRMHMGG QIPNTPLPEN PCDFTGPEPM MVGENGSTSI VCHDDV-ESI bmy_00263T0/1-993 QQHIRMHMGG QIPNTPLPEN PCDFTGPEPM MVGENGSTSV VCHDDV-ESI BACU011321/1-953 QQHIRMHMGG QIPNTPLPEN PCDFTGPEPM MVGENGSTSV VCHDDV-ESI 701 750 ENSBTAP00000004035/1-1061 DVDKACPQEA APSSSSRVLG PLAGVLAASP TPGLATAASL DAPVKAGLAA ENSP00000217086/1-1053 DVEEVSSQE- APSSSSKVPT PLPSIHSASP TLGFAMMASL DAPGKVGPAP ENSTTRP00000007329/1-1005 DVDEVCSQE- APGSSLKLPM PLPSIHSPSP TLGLASVASL DALGKAGLAG bmy_00263T0/1-993 DVDKVCSQE- APGSSSKVPM PLPSIHSASP TLGLSSVASL DAPGKTGLAG BACU011321/1-953 DVDKVCSQE- APGSSSKVPM PLPSIHSASP TLGLSSVASL DAPGKTGLAG 751 800 ENSBTAP00000004035/1-1061 LVLQRQGSRE NGSVESDGLT NDDASSVMGD PECASRSPDV LESTSFQAVS ENSP00000217086/1-1053 FNLQRQGSRE NGSVESDGLT NDSSS-LMGD QEYQSRSPDI LETTSFQALS ENSTTRP00000007329/1-1005 LVLQRQSSRE NGSVESDGLT NDSSS-XXXX XXXXXXXXXX XXXXXXQAVS bmy_00263T0/1-993 LVLQRQSSRE NGSVESDGLT NDSSSSVMGD QEYPSRSPDV LETTSFQAVS BACU011321/1-953 LVLQRQSSRE NGSVESDGLT NDSSSSVMGD QEYPSRSPDV LETTSFQAVS 801 850 ENSBTAP00000004035/1-1061 PAHSQAESVK SKSPDADGKG DGSESSRTEM EGRSSVPSTF IRAQPTYVKV ENSP00000217086/1-1053 PANSQAESIK SKSPDAGSKA ESSENSRTEM EGRSSLPSTF IRAPPTYVKV ENSTTRP00000007329/1-1005 PANSQAESVK SKSPDTGG-V DSSENSRTET EGRSTGPPTL IRAQPAYVKV bmy_00263T0/1-993 PANSQAESVK SKSPDAGGKV DSSENSRPET EGRSSGPPTF IRAQPAYVKV BACU011321/1-953 PANSQAESVK SKSPDAGGKV DSSENSRPET EGRSSGPPTF IRAQPAYVKV 851 900 ENSBTAP00000004035/1-1061 EVPGGFVGPT TMSPGMTPLL AAQPRRQAKQ HGCTRCGKNF SSASALQIHE ENSP00000217086/1-1053 EVPGTFVGPS TLSPGMTPLL AAQPRRQAKQ HGCTRCGKNF SSASALQIHE ENSTTRP00000007329/1-1005 EVPGAFVGPA TMSPGVTPLL AIQPRRQAKQ HGCTRCGKNF SSASALQIHE bmy_00263T0/1-993 EVPGAFVGPA TMSPGVTPLL AIQPRRQAKQ HGCTRCGKNF SSASALQIHE BACU011321/1-953 EVPGAFVGPT TMSPGVTPLL AVQPRRQAKQ HGCTRCGKNF SSASALQIHE 901 950 ENSBTAP00000004035/1-1061 RTHTGEKPFV CNICGRAFTT KGNLKVHYMT HGANNSSARR GRKLAIENTM ENSP00000217086/1-1053 RTHTGEKPFV CNICGRAFTT KGNLKVHYMT HGANNNSARR GRKLAIENTM ENSTTRP00000007329/1-1005 RTHTGEKPFV CNICGRAFTT KGNLKVHYMT HGANNSSARR GRKLAIENTM bmy_00263T0/1-993 RTHTGEKPF- ---------- -----VHYMT HGANNSSARR GRKLAIENTM BACU011321/1-953 RTHTGEKPFV CNICGRAFTT KGNLKVHYMT HGANNSSARR GRKLAIENTM 951 1000 ENSBTAP00000004035/1-1061 ALLGTDAKRV PEMFPKEIVA PSVSVDPVVW SQYATMLNGG LAMKTNEISV ENSP00000217086/1-1053 ALLGTDGKRV SEIFPKEILA PSVNVDPVVW NQYTSMLNGG LAVKTNEISV ENSTTRP00000007329/1-1005 ALLGTDGKRV PEIFPKEILA PSVNVDPVVW NQYTTMLNGG LAMKTNEISV bmy_00263T0/1-993 ALLGTDGKRV PEIFPKEILA PSVNVDPVVW NQYTTMLNGG LAMKTNEISV BACU011321/1-953 ALLGTDGKRV PEIFPKEILA PSVNVDPVVW NQYTTMLNGG LAMKTNEISV 1001 1050 ENSBTAP00000004035/1-1061 IQSGGVPTLP VSLGASSVVN NTAASKIDGS QSAAGAEVEK PGTADNVPKH ENSP00000217086/1-1053 IQSGGVPTLP VSLGATSVVN NATVSKMDGS QSGISADVEK PSATDGVPKH ENSTTRP00000007329/1-1005 IQSGGIPTLP VSLGASSVVN NTATSKMDGS QSAISAEVEK PGAADSVPKH bmy_00263T0/1-993 IQSGGIPTLP VSLGASSVVN NTATSKMDGS QSAISAEVEK PGAADSVPKH BACU011321/1-953 IQSGGIPTLP VSLGASSVVN NTATSKMDGS QSAISAEVEK PGAANSVPKH 1051 1100 ENSBTAP00000004035/1-1061 QFPHLLEENK IAVS ENSP00000217086/1-1053 QFPHFLEENK IAVS ENSTTRP00000007329/1-1005 QFPHFLEENK IAVS bmy_00263T0/1-993 QFPHFLEENK IAVS BACU011321/1-953 QFPHFLEENK IAVS