KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:38 2014 Check: 00 .. Name: ENSP00000431418/1-796 Len: 811 Check: 1056 Weight: 1.00 Name: ENSBTAP00000003980/1-797 Len: 811 Check: 7416 Weight: 1.00 Name: BACU003921/1-561 Len: 811 Check: 3331 Weight: 1.00 Name: bmy_03433T0/1-710 Len: 811 Check: 821 Weight: 1.00 Name: ENSTTRP00000013763/1-778 Len: 811 Check: 9279 Weight: 1.00 // 1 50 ENSP00000431418/1-796 MLRGGRRGQL GWHSWAAGPG SLLAWLILAS AGAAPCPDAC CPHGSSGLRC ENSBTAP00000003980/1-797 MLRGGRGGQP GGHLRATGPG SLLAWLMLAS AGAASCPDVC CPHGPSGLRC BACU003921/1-561 ---------- ---------- ----MLLSEQ RSMPAQPSLA LP-------- bmy_03433T0/1-710 ---------- ---------- -MHAW----- ---------- ---------- ENSTTRP00000013763/1-778 ---GPRR--- -----ATGPG NLLAWLMLTS ASAAPCPDVC CPHGP-GLRC 51 100 ENSP00000431418/1-796 TRDGALDSLH HLPGAENLTE LYIENQQHLQ HLELRDLRGL GELRNLTIVK ENSBTAP00000003980/1-797 TRPGALDNLL HLPGAENLTE LYIENQQHLQ QLKRSDLRGL GELRKLTIVK BACU003921/1-561 ----SLGASA GWPG------ -YIENQQHLW QLKLSDLRGL GELRNLTIVK bmy_03433T0/1-710 ------DDMA ---------- VYIENQQHLW QLKLSDLRGL GELRNLTIVK ENSTTRP00000013763/1-778 TRHEA-DSLH HLPGAENLTE LYIENQPHLW QLKLSDLRGL GELRNLTIVK 101 150 ENSP00000431418/1-796 SGLRFVAPDA FHFTPRLSRL NLSFNALESL SWKTVQGLSL QELVLSGNPL ENSBTAP00000003980/1-797 SGLRSVAPNA FHYTPRLGRL NLSFNALESL SWKTVQGLSL QELVLSGNPL BACU003921/1-561 SGLRFVAPDA FHFTPRLRR- ---------- ---------- --LVLSGNPL bmy_03433T0/1-710 SGLRFVAPDA FHFTPRLRRL DLSFNALESL SWKTVQGLSL QELVLSGNPL ENSTTRP00000013763/1-778 SGLRFVAPDA FHFTPRLRRL DLSFNALESL SWKTVQGLSL QELVLSGNPL 151 200 ENSP00000431418/1-796 HCSCALRWLQ RWEEEGLGGV PEQKLQCHGQ GPLAHMPNAS CGVPTLKVQV ENSBTAP00000003980/1-797 HCSCALLWLQ RWEEEGRGGV REQKLQCPGQ GPLALMSNAS CGEPTLKIQM BACU003921/1-561 HCTCALLWLQ RWEEEGLGGV REQKLQCPGQ GPLALMSNTS CGVPTLKVQM bmy_03433T0/1-710 HCTCALLWLQ RWEEEGLGGV REQKLQCPGQ GPLALMSNTS CGVPTLKVQM ENSTTRP00000013763/1-778 HCTCALLWLQ RWEEEGLGGV REQKLQCPGQ GPLALMSNTS CGVPTLKVQM 201 250 ENSP00000431418/1-796 PNASVDVGDD VLLRCQVEGR GLEQAGWILT ELEQSATVMK SGGLPSLGLT ENSBTAP00000003980/1-797 SNASVDVGAD VLLQCQVEGQ GLEQAGWILT ELEGSATVME SGSLPSLGLT BACU003921/1-561 PNASVDVGDD VLLQCQVEGQ GLEQAGWILT ELEESATVMQ SGSLPSLGLT bmy_03433T0/1-710 PNASVDVGDD VLLQCQVEGQ GLEQAGWILT ELEESATVMQ SGSLPSLGLT ENSTTRP00000013763/1-778 PNASVDVGDD VLLQCQVEGQ GLEQAGWIFT ELEESATVMQ SGSLPSLGLT 251 300 ENSP00000431418/1-796 LANVTSDLNR KNVTCWAEND VGRAEVSVQV NVSFPASVQL HTAVEMHHWC ENSBTAP00000003980/1-797 LANVTSDLNR KNVTCWAEND VGRAEVSAQV NVSFPASVHL QAAVEQHHWC BACU003921/1-561 LANVTSDLNR KNVTCWAEND VGRAEISVQV NVSFPASVHL QPAVEQHHWC bmy_03433T0/1-710 LANVTSDLNR KNVTCWAEND VGRAEVSVQV NVSFPASVHL QPAVEQHHWC ENSTTRP00000013763/1-778 LANVTSDLNR KNVTCWAEND VGRAEVSVQV NVSFPASVHL QPAVEQHHWC 301 350 ENSP00000431418/1-796 IPFSVDGQPA PSLRWLFNGS VLNETSFIFT EFLEPAANET VRHGCLRLNQ ENSBTAP00000003980/1-797 IPFSVDGQPA PSLRWLFNGS VLNETSFIFT EFLDLAANET MRHGCLRLNQ BACU003921/1-561 IPFSVDGQPT PSLRWLFNGS VLNETSFIFT EFLELAANET VRHGCLRLNQ bmy_03433T0/1-710 IPFSVDGQPT PSLRWLFNGS VLNETSFIFT EFLELAANET VRHGCLRLNQ ENSTTRP00000013763/1-778 IPFSVDGQPT PSLRWLFNGS VLNETSFIFT EFLELAANET VRHGCLRLNQ 351 400 ENSP00000431418/1-796 PTHVNNGNYT LLAANPFGQA SASIMAAFMD NPFEFNPEDP IPVSFSPVDT ENSBTAP00000003980/1-797 PTHVNNGNYT LLATNPLGQA AAWVMAAFMD NPFEFNPEDP IPVSFSPVDT BACU003921/1-561 PTHVNNGNYT LLATNSLGQA AASVMAAFMD NPFEFNPEDP IPVSFSPVDT bmy_03433T0/1-710 PTHVNNGNYT LLATNPLGQA AASVMAAFMD NPFEFNPEDP IP------DT ENSTTRP00000013763/1-778 PTHVNNGNYT LLATNPLGQA AASIMAAFMD NPFEFNPEDP IPVSFSPVD- 401 450 ENSP00000431418/1-796 NSTSGDPVEK KDETPFGVSV AVGLAVFACL FLSTLLLVLN KCGRRNKFGI ENSBTAP00000003980/1-797 NSTSGDPVE- KDETPFGVSM AVGLAVFACL FLSTTFLVLN KCGRRNKFGI BACU003921/1-561 NSTSGDPVE- KDETPFGVSM AVGLAVFACL FLSTTFLVLN KCGRRNKFGI bmy_03433T0/1-710 NSTSGDPVE- KDETPFGVSM AVGLAVFACL FLSTTFLVLN KCGRRNKFGI ENSTTRP00000013763/1-778 -STSG-AVE- KDET-FGVSM AVGLAVFACL FLSTTFLVLN KCGRRNKFGI 451 500 ENSP00000431418/1-796 NRPAVLAPED GLAMSLHFMT LGGSSLSPTE GKGSGLQGHI IENPQYFSDA ENSBTAP00000003980/1-797 NRPAVLAPED GLAMSLHFMT LGGSSLSPTE GKGSGLQGHI IENPQYFSDA BACU003921/1-561 NRPTVLAPED GLAMSLHFMT LGGSSLSPSE GKSSGLQGHI IENPQYFSDA bmy_03433T0/1-710 NRPTVLAPED GLAMSLHFMT LGGSSLSPSE GKSSGLQGHI IENPQYFSDA ENSTTRP00000013763/1-778 NRPTVLAPED GLAMSLHFMT LGGSSLSPSE GKSSGLQGHI IENPQYFSDA 501 550 ENSP00000431418/1-796 CVHHIKRRDI VLKWELGEGA FGKVFLAECH NLLPEQDKML VAVKALKEAS ENSBTAP00000003980/1-797 CVHHIKRRDI VLKWELGEGA FGKVFLAECH NLLPEKDKML VAVKALKEVS BACU003921/1-561 CVHHIKRRDI VLKWELGEGA FGKVYLAECH NLLPEQDKML VAVKALKEVS bmy_03433T0/1-710 CVHHIKRRDI VLKWELGEGA FGKVFLAECH NLLPEQDKML VAVKALKEVS ENSTTRP00000013763/1-778 CVHHIKRRDI VLKWELGEGA FGKVFLAECH SLLPEQDKML VAVKALKEVS 551 600 ENSP00000431418/1-796 ESARQDFQRE AELLTMLQHQ HIVRFFGVCT EGRPLLMVFE YMRHGDLNRF ENSBTAP00000003980/1-797 ESARQDFQRE AELLTMLQHQ HIVRFFGVCT EGRPLLMVFE YMRHGDLNRF BACU003921/1-561 ESARQDFQRE AELLTMLQHQ HIVRFFGVCT EGRPLLMVFE YMRHGDLNRF bmy_03433T0/1-710 ESARQDFQRE AELLTMLQHQ HIVRFFGVCT EGRPLLMVFE YMRHGDLNRF ENSTTRP00000013763/1-778 ESARQDFQRE AELLTMLQHQ HIVRFFGVCT EGRPLLMVFE YMRHGDLNRF 601 650 ENSP00000431418/1-796 LRS------- ------HGPD AKLLAGGEDV APGPLGLGQL LAVASQVAAG ENSBTAP00000003980/1-797 LRS------- ------HGPD AKLLAGGEDV APGPLGLGQL LAVASQVAAG BACU003921/1-561 LRY------- ------EGLA LAL------- APGP------ ---------- bmy_03433T0/1-710 LRYEGLALAL APGPSSHGPD AKLLAGGEDV APGPLGLGQL LAVASQVAAG ENSTTRP00000013763/1-778 LRS------- ------HGPD AKLLAGGEDV APGPLGLGQL LAVASQVAAG 651 700 ENSP00000431418/1-796 MVYLAGLHFV HRDLATRNCL VGQGLVVKIG DFGMSRDIYS TDYYRVGGRT ENSBTAP00000003980/1-797 MVYLAGLHFV HRDLATRNCL VGQGLVVKIG DFGMSRDIYS TDYYRVGGRT BACU003921/1-561 ---------- ---------- ---------- ---------- ---------S bmy_03433T0/1-710 MVYLAGLHFV HRDLATRNCL VGQGLVVKIG DFGMSRDIYS TDYYRVGGRT ENSTTRP00000013763/1-778 MVYLAGLHFV HRDLATRNCL VGQGLVVKIG DFGMSRDIYS TDYYRVGGRT 701 750 ENSP00000431418/1-796 MLPIRWMPPE SILYRKFTTE SDVWSFGVVL WEIFTYGKQP WYQLSNTE-- ENSBTAP00000003980/1-797 MLPIRWMPPE SILYRKFTTE SDVWSFGVVL WEIFTYGKQP WYQLSNTEPQ BACU003921/1-561 SLPYKHIP-- ---------- ---------- ---------- ---------- bmy_03433T0/1-710 MLPIRWMPPE SILYRKFTTE SDVWSFGVVL WEIFTYGKQP WYQLSNTE-- ENSTTRP00000013763/1-778 MLPIRWMPPE SILYRKFTTE SDVWSFGVVL WEIFTYGKQP WYQLSNTE-- 751 800 ENSP00000431418/1-796 AIDCITQGRE LERPRACPPE VYAIMRGCWQ REPQQRHSIK DVHARLQALA ENSBTAP00000003980/1-797 AIECITQGRE LERPRACPPE VYAIMRGCWQ REPQQRHSIK DVHARLQALA BACU003921/1-561 ---------- -----AC--- ---------- ---------- ---------- bmy_03433T0/1-710 ---------- ---------- ---------- REPQQRHSIK DVHTRLQALA ENSTTRP00000013763/1-778 AIECITQGRE LERPRACPPE VYAIMRGCWQ REPQQRHSIK DVHTRLQALA 801 850 ENSP00000431418/1-796 QAPPVYLDVL G ENSBTAP00000003980/1-797 QAPPVYLDVL G BACU003921/1-561 --------LL N bmy_03433T0/1-710 QAPPVYLDVL G ENSTTRP00000013763/1-778 QAPPVYLDVL G