KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:36 2014 Check: 00 .. Name: ENSTTRP00000013762/1-1300 Len: 1486 Check: 2315 Weight: 1.00 Name: ENSP00000357178/1-1297 Len: 1486 Check: 9355 Weight: 1.00 Name: bmy_03432T0/1-1041 Len: 1486 Check: 4945 Weight: 1.00 Name: BACU003922/1-1301 Len: 1486 Check: 5336 Weight: 1.00 Name: ENSBTAP00000003973/1-1301 Len: 1486 Check: 5874 Weight: 1.00 // 1 50 ENSTTRP00000013762/1-1300 MAVPSLRPWV ACLLAILLSL GFSLDTREVC PSLDIRSEVA ELRRLENCSV ENSP00000357178/1-1297 MAVPSLWPWG ACLPVIFLSL GFGLDTVEVC PSLDIRSEVA ELRQLENCSV bmy_03432T0/1-1041 ---------- ---------- ---------- ---------- ---------- BACU003922/1-1301 MAVPSLWPWV ACLLVILLSL GFSLDTREVC PSLDIRSEVA ELRRLENCSV ENSBTAP00000003973/1-1301 MAVPSLWPWV ACLLAILLSL GFGLDTREVC PSLDIRSDVA ELRRLENCSV 51 100 ENSTTRP00000013762/1-1300 VEGHLQILLM FTATGEDFRG LSFPRLIQVT DYLLLFRVYG LESLRDLFPN ENSP00000357178/1-1297 VEGHLQILLM FTATGEDFRG LSFPRLTQVT DYLLLFRVYG LESLRDLFPN bmy_03432T0/1-1041 ---------M FTATGEDFRG LSFPRLTQVT DYLLLFRVYG LESLRDLFPN BACU003922/1-1301 VEGHLQILLM FTATGEDFRG LSFPRLTQVT DYLLLFRVYG LESLRDLFPN ENSBTAP00000003973/1-1301 VEGHLQILLM FTATGEDFRG LSFPRLTQVT DYLLLFRVYG LESLRDLFPN 101 150 ENSTTRP00000013762/1-1300 LTVIRGARLF LGYALVIFEM PHLRDVGLPA LGAVLSGAVR VEKNQELCHL ENSP00000357178/1-1297 LAVIRGTRLF LGYALVIFEM PHLRDVALPA LGAVLRGAVR VEKNQELCHL bmy_03432T0/1-1041 LA-------- ---------- ---------- ---------- ---------- BACU003922/1-1301 LAVIRGARLF LGYALVIFEM PHLRDVGLPA LGAVLSGAVR VEKNQELCHL ENSBTAP00000003973/1-1301 LAVIRGARLF LGYALVIFEM PHMRDVGLPA LGAVLRGAVR VEKNQELCHL 151 200 ENSTTRP00000013762/1-1300 STIDWGLLQP SPGANHIVGN KLGEECADVC PGVLGATGEP CARTTFSGHT ENSP00000357178/1-1297 STIDWGLLQP APGANHIVGN KLGEECADVC PGVLGAAGEP CAKTTFSGHT bmy_03432T0/1-1041 ---------- ---------- ---------- ---------- ---------- BACU003922/1-1301 STIDWGLLQP SPGANHIVGN KLGEECADVC PGVLGATGEP CARTTFSGHT ENSBTAP00000003973/1-1301 STIDWGLLQP SPGANHIVGN KLGEECADVC PGLLGTTGEP CARTTFSGHT 201 250 ENSTTRP00000013762/1-1300 DYRCWTSSHC QRVCPCPRGL ACTVRGECCH TECLGGCSRP EDPHACVACR ENSP00000357178/1-1297 DYRCWTSSHC QRVCPCPHGM ACTARGECCH TECLGGCSQP EDPRACVACR bmy_03432T0/1-1041 ---------- ---------- ---------- ---------- ---------- BACU003922/1-1301 DYRCWTSSHC QRVCPCPRGL ACTVRGECCH TECLGGCSRP EDPHACVACR ENSBTAP00000003973/1-1301 DYRCWTSSHC QKVCPCPRGL ACTVRGECCH AECLGGCSRP EDPRACVACR 251 300 ENSTTRP00000013762/1-1300 HLYFQGACHR ACPPGTYQHE SWRCVTAEHC ASLRSVPGRA STFGIHQGSC ENSP00000357178/1-1297 HLYFQGACLW ACPPGTYQYE SWRCVTAERC ASLHSVPGRA STFGIHQGSC bmy_03432T0/1-1041 -----GACHR ACPPGTYQHE SWRCVTAEHC ASLRSVPGRA STFGIHQGSC BACU003922/1-1301 HLYFQGACHR ACPPGTYQHE SWRCVTAEHC ASLRSVPGRA STFGIHQGSC ENSBTAP00000003973/1-1301 HLYFQGACHR ACPPGTYQHE SWRCVTAERC ASLRSVPGRA STFGIHQGSC 301 350 ENSTTRP00000013762/1-1300 LAQCPPGFTR NDSSIFCH-C EGLCPKECKV GTKTIDSVQA AQDLVGCTHV ENSP00000357178/1-1297 LAQCPSGFTR NSSSIFCHKC EGLCPKECKV GTKTIDSIQA AQDLVGCTHV bmy_03432T0/1-1041 LAQCPPGFTR NDSSIFCHKC EGLCPKECKV GTKTIDSVQA AQDLVGCTHV BACU003922/1-1301 LAQCPPGFTR NDSSIFCHKC EGLCPKECKV GTKTIDSVQA AQDLVGCTHV ENSBTAP00000003973/1-1301 LAQCPPGFTR NDSSIFCHKC EGLCPKECKV GTKTIDSVQA AQDLVGCTHV 351 400 ENSTTRP00000013762/1-1300 EGSLILNLRQ GYNLELELQR SLGLVETITG FLKIKHSFAL VSLGFFKNLK ENSP00000357178/1-1297 EGSLILNLRQ GYNLEPQLQH SLGLVETITG FLKIKHSFAL VSLGFFKNLK bmy_03432T0/1-1041 EGSLILNLRQ GYNLELELQR SLGLVETITG FLKIKHSFAL VSLGFFKNLK BACU003922/1-1301 EGSLILNLRQ GYNLELELQH SLGLVETITG FLKIKHSFAL VSLGFFKNLK ENSBTAP00000003973/1-1301 EGSLILNLRQ GYNLELELQR SLGLVETITG FLKIKHSFAL VSLGFFKNLK 401 450 ENSTTRP00000013762/1-1300 LIRGDTMVDG ---------- ---------- ---------- -NYTLYVLDN ENSP00000357178/1-1297 LIRGDAMVDG ---------- ---------- ---------- -NYTLYVLDN bmy_03432T0/1-1041 LIRGDTMVDG AAPLGRTHKT PPSSPLAPTG RAEQGSLASP RNYTLYVLDN BACU003922/1-1301 LIRGDTMVDG ---------- ---------- ---------- -NYTLYVLDN ENSBTAP00000003973/1-1301 LIRGDTMVDG ---------- ---------- ---------- -NYTLYVLDN 451 500 ENSTTRP00000013762/1-1300 QNLQQLGSWV AAGLTIPVGK IYFAFNPRLC LEHIYRLEEV TGTKGRQNKA ENSP00000357178/1-1297 QNLQQLGSWV AAGLTIPVGK IYFAFNPRLC LEHIYRLEEV TGTRGRQNKA bmy_03432T0/1-1041 QNLQQLGSWV AAGLAIPVGK IYFAFNPRLC LEHIYRLEEV TGTKGRQNKA BACU003922/1-1301 QNLQQLGSWV AAGLTIPVGK IYFAFNPRLC LEHIYRLEEV TGTKGRQNKA ENSBTAP00000003973/1-1301 QNLQQLGSWV AAGLTIPVGK IYFAFNPRLC LEHIYRLEEV TGTKGRQNKA 501 550 ENSTTRP00000013762/1-1300 EINPRTNGDR AAC------- -----QTRTL RFVSNVTEAD RILLRWERFE ENSP00000357178/1-1297 EINPRTNGDR AAC------- -----QTRTL RFVSNVTEAD RILLRWERYE bmy_03432T0/1-1041 EINPRTNGDR AACEAQYPNP WHPGSQTRTL RFVSNVTEAD RILLRWERFE BACU003922/1-1301 EINPRTNGDR AAC------- -----QTRTL RFVSNVTEAD RILLRWERFE ENSBTAP00000003973/1-1301 EINPRTNGDR AAC------- -----QTRTL RFVSNVTEAN RILLRWERYE 551 600 ENSTTRP00000013762/1-1300 PLEARDLLSF IVYYKE---- -SXXXXXXXX XXXXXXXXXX XNLLDVELPL ENSP00000357178/1-1297 PLEARDLLSF IVYYKE---- -SPFQNATEH VGPDACGTQS WNLLDVELPL bmy_03432T0/1-1041 PLEARDLLSF IVYYKESDGV FSPFQNATEH VGPDACGAQS WNLLDVELPL BACU003922/1-1301 PLEARDLLSF IVYYKE---- -SPFQNATEH VGPDACGAQS WNLLDVELPL ENSBTAP00000003973/1-1301 PLEARDLLSF IVYYKE---- -SPFQNATEY IGPDACGAQS WNLLDVELPL 601 650 ENSTTRP00000013762/1-1300 SRTQEPGVTL APLKPWTQYA VFVRAITLTT EEDSPHQGAQ SPIIYLRTLP ENSP00000357178/1-1297 SRTQEPGVTL ASLKPWTQYA VFVRAITLTT EEDSPHQGAQ SPIVYLRTLP bmy_03432T0/1-1041 SRTQEPGVTL TPLKPWTQYA VFVRAITLTT AEDSPHQGAQ SPIIYLRTLP BACU003922/1-1301 SRTQEPGVTL TPLKPWTQYA VFVRAITLTT AEDSPHQGAQ SPIIYLRTLP ENSBTAP00000003973/1-1301 SRTQEPGVTL APLKPWTQYA VFVRAITLTT AEDSPHQGAQ SPIVYLRTLP 651 700 ENSTTRP00000013762/1-1300 AAPTVPQDVI STSNSSSHLL VRWKPPTQRN GNITYYLVLW QRLAEDSDLY ENSP00000357178/1-1297 AAPTVPQDVI STSNSSSHLL VRWKPPTQRN GNLTYYLVLW QRLAEDGDLY bmy_03432T0/1-1041 AAPTVPQDVI STSNSSSHLL VRWKPPTQRN GNITYYLVLW QRLAEDSDLY BACU003922/1-1301 AAPTVPQDVI STSNSSSHLL VRWKPPTQRN GNITYYLVLW QRLAEDSDLY ENSBTAP00000003973/1-1301 AAPTVPQDVI STSNSSSHLL VRWKPPTQRN GNITYYLVLW QRLAEDSDLY 701 750 ENSTTRP00000013762/1-1300 LNDYCHRGLR LPTSNNEPRF DREDGELEAD REPGCCPCQH PPPGQVLPPL ENSP00000357178/1-1297 LNDYCHRGLR LPTSNNDPRF DGEDGDPEAE MESDCCPCQH PPPGQVLPPL bmy_03432T0/1-1041 LNDYCHRG-- ---------- ---------- ---------- ---------- BACU003922/1-1301 LNDYCHRGLR LPTSNNDPRF DREDGELEAD REPGCCPCQH PPPGQVLPPL ENSBTAP00000003973/1-1301 LNDYCHRGLR LPTSNNDPRF DGEDGELEAD REPGCCPCQH PPPGQVLPPL 751 800 ENSTTRP00000013762/1-1300 EAQEASFQKK FENFLHNAIT IPKSPWKVTS INKSPQRDSW RHRRAAGALR ENSP00000357178/1-1297 EAQEASFQKK FENFLHNAIT IPISPWKVTS INKSPQRDSG RHRRAAGPLR bmy_03432T0/1-1041 ---------- ---------- ---------- ---------- ---------- BACU003922/1-1301 EAQEASFQKK FENFLHNAIT IPKSPWKVTS INKSPQRDSG RHRRAAGALR ENSBTAP00000003973/1-1301 EAQEASFQKK FENFLHNAIT IPKSPWKVTS INKSPQRDSG RSRRAAEALR 801 850 ENSTTRP00000013762/1-1300 LGGNSSDFEI QEDKVPRERA VLKGLRHFTE YRIDIHACNH AAHTVGCSAA ENSP00000357178/1-1297 LGGNSSDFEI QEDKVPRERA VLSGLRHFTE YRIDIHACNH AAHTVGCSAA bmy_03432T0/1-1041 ---------- ---------- ---------- ---------- ---------- BACU003922/1-1301 LGGNSSDFEI QEDKVPRERA VLRGLRHFTE YRIDIHACNH AAHTVGCSAA ENSBTAP00000003973/1-1301 LGGNSSDFKI QEDKVPRERA VLSGLRHFTE YRIDIHACNH AAHTVGCSAA 851 900 ENSTTRP00000013762/1-1300 TFVFARTMPH XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000357178/1-1297 TFVFARTMPH READGIPGKV AWEASSKNSV LLRWLEPPDP NGLILKYEIK bmy_03432T0/1-1041 ---------- -EADGIPGKV AWEAASKSSV LLRWLEPPDP NGLILKYEIK BACU003922/1-1301 TFVFARTMPH READGIPGKV AWEAASKSSV LLRWLEPPDP NGLILKYEIK ENSBTAP00000003973/1-1301 TFVFARTMPH READGIPGKV AWEAASKSSV LLRWLEPPDP NGLILKYEIK 901 950 ENSTTRP00000013762/1-1300 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000357178/1-1297 YRRLGEEATV LCVSRLRYAK FGGVHLALLP PGNYSARVRA TSLAGNGSWT bmy_03432T0/1-1041 YRRLGEEATV LCVSRLRYAK FGGVHLALLP PGNYSARVRA TSLAGNGSWT BACU003922/1-1301 YRRLGEEATV LCVSRLRYAK FGGVHLALLP PGNYSARVRA TSLAGNGSWT ENSBTAP00000003973/1-1301 YRRLGEEATV LCVSRLRYAK FGGVHLALLP PGNYSARVRA TSLAGNGSWT 951 1000 ENSTTRP00000013762/1-1300 XXXXXXXXXX XEEDSG---- ---------- --GLHVLLT- ---------- ENSP00000357178/1-1297 DSVAFYILGP EEEDAG---- ---------- --GLHVLLT- ---------- bmy_03432T0/1-1041 DGVAFYIPGP ACQIPDPRXR XKTSLESAWC SPGVTLIRAR GMISNFLPPC BACU003922/1-1301 DGVAFYIPGP EEEDSG---- ---------- --GLHVLLT- ---------- ENSBTAP00000003973/1-1301 DSVAFYIPGP EEEDSG---- ---------- --GLHVLLT- ---------- 1001 1050 ENSTTRP00000013762/1-1300 VTPVGLMLLS ILAALGFFYS KK-----RNS TLYTSVNPEY FSASH----- ENSP00000357178/1-1297 ATPVGLTLLI VLAALGFFYG KK-----RNR TLYASVNPEY FSASD----- bmy_03432T0/1-1041 NVPLPCPLTL LLPSRGPFLS DPLTSHCRNS MLYTSVNPEY FSASHSRSGG BACU003922/1-1301 VTPVGLMLLI ILAALGFFYS RK-----RSS TLYTSVNPEY FSASH----- ENSBTAP00000003973/1-1301 VTPAGLMLLI ILAVLGFFYS KK-----RNS TLYASVNPEY FSASH----- 1051 1100 ENSTTRP00000013762/1-1300 ---------- ---------- ---------- ---------- ---------- ENSP00000357178/1-1297 ---------- ---------- ---------- ---------- ---------- bmy_03432T0/1-1041 GWTGGVGKGD RRGEEADFQT ILEKAALGPE PFRREEKWVE VWQRAVPLPC BACU003922/1-1301 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003973/1-1301 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000013762/1-1300 ------MYIP DEWEVPREQI SIIRELGQGS FGMVYEGLAQ GLEVGEELTP ENSP00000357178/1-1297 ------MYVP DEWEVPREQI SIIRELGQGS FGMVYEGLAR GLEAGEESTP bmy_03432T0/1-1041 DSHFLSVYIP DEWEVPREQI SIIRELGQGS FGMVYEGLAQ GLEVGEELTP BACU003922/1-1301 ------MYIP DEWEVPREQI SIIRELGQGS FGMVYEGLAQ GLEVGEELTP ENSBTAP00000003973/1-1301 ------MYIP DEWEVPREQI SIIRELGQGS FGMVYEGLAQ GLEVGEEPTP 1151 1200 ENSTTRP00000013762/1-1300 VALKTVNELA SPRERIEFLK EASVMKAFKC HHVVRLLGVV SQGQPTLVIM ENSP00000357178/1-1297 VALKTVNELA SPRECIEFLK EASVMKAFKC HHVVRLLGVV SQGQPTLVIM bmy_03432T0/1-1041 VALKTVNELA SPRERIEFLK EASVMKAFKC HHVVRLLGVV SQGQPTLVIM BACU003922/1-1301 VALKTVNELA SPRERIEFLK EASVMKAFKC HHVVRLLGVV SQGQPTLVIM ENSBTAP00000003973/1-1301 VALKTVNELA SPRERIEFLK EASVMKAFKC HHVVRLLGVV SQGQPTLVIM 1201 1250 ENSTTRP00000013762/1-1300 ELMTRGDLKS HLRSLRPEAE NNPGLPRPAL GDMIQMAGEI ADGMAYLAAN ENSP00000357178/1-1297 ELMTRGDLKS HLRSLRPEAE NNPGLPQPAL GEMIQMAGEI ADGMAYLAAN bmy_03432T0/1-1041 ELMTRGDLKS HLRSLRPEAE NNPGLPRPAL GDMIQMAGEI ADGMAYLAAN BACU003922/1-1301 ELMTRGDLKS HLRSLRPEAE NNPGLPRPAL GDMIQMAGEI ADGMAYLAAN ENSBTAP00000003973/1-1301 ELMTRGDLKS HLRSLRPEAE NNPGLPRPAL GDMIQMAGEI ADGMAYLAAN 1251 1300 ENSTTRP00000013762/1-1300 KFVHRDLAAR NCMVSQDFTV KIGDFGMTRD VYETDYYRKG GKGLLPVRWM ENSP00000357178/1-1297 KFVHRDLAAR NCMVSQDFTV KIGDFGMTRD VYETDYYRKG GKGLLPVRWM bmy_03432T0/1-1041 KFVHRDLAAR NCMVSQDFTV KIGDFGMTRD VYETDYYRKG GKGLLPVRWM BACU003922/1-1301 KFVHRDLAAR NCMVSQDFTV KIGDFGMTRD VYETDYYRKG GKGLLPVRWM ENSBTAP00000003973/1-1301 KFVHRDLAAR NCMVSQDFTV KIGDFGMTRD VYETDYYRKG GKGLLPVRWM 1301 1350 ENSTTRP00000013762/1-1300 APESLKDGIF TTHSDVW--- ---------- ---------- ---------- ENSP00000357178/1-1297 APESLKDGIF TTHSDVW--- ---------- ---------- ---------- bmy_03432T0/1-1041 APESLKDGIF TTHSDVWWGL AGAEGSGGVE AGPWERPGCT PWGALSCIKG BACU003922/1-1301 APESLKDGIF TTHSDVW--- ---------- ---------- ---------- ENSBTAP00000003973/1-1301 APESLKDGIF TTHSDVW--- ---------- ---------- ---------- 1351 1400 ENSTTRP00000013762/1-1300 ---------- -SFGVVLWEI VTLAEQPYQG LSNEQVLKFV MDGGVLEELE ENSP00000357178/1-1297 ---------- -SFGVVLWEI VTLAEQPYQG LSNEQVLKFV MDGGVLEELE bmy_03432T0/1-1041 AGLRPSSTSS RSFGVVLWEI VTLAEQPYQG LSNEQVLKFV MDGGVLEELE BACU003922/1-1301 ---------- -SFGVVLWEI VTLAEQPYQG LSNEQVLKFV MDGGVLEELE ENSBTAP00000003973/1-1301 ---------- -SFGVVLWEI VTLAEQPYQG LSNEQVLKFV VDGGVLEELE 1401 1450 ENSTTRP00000013762/1-1300 SCPVQLQELM HRCWQQNPRL RPTFTHILDS IQEELRPSFR LLSFYYSPEC ENSP00000357178/1-1297 GCPLQLQELM SRCWQPNPRL RPSFTHILDS IQEELRPSFR LLSFYYSPEC bmy_03432T0/1-1041 SCPVQL---- ---------- ---------- ---------- ---------- BACU003922/1-1301 SCPVQLQELM HRCWQQNPRL RPTFTHILDS IQEELRPSFR LLSFYYSPEC ENSBTAP00000003973/1-1301 SCPVQLQELM QRCWQQNPRL RPTFTHILDS IQEELRPSFR LLSFYHSPEC 1451 1500 ENSTTRP00000013762/1-1300 RGARASLLRT DAEPDSPPTP KGASSDFSPQ NGGPGH ENSP00000357178/1-1297 RGARGSLPTT DAEPDSSPTP R----DCSPQ NGGPGH bmy_03432T0/1-1041 ---------- ---------- ---------- ------ BACU003922/1-1301 RGARASLLPT DAEPDSPPTP KGASSDFSPQ NGGPGH ENSBTAP00000003973/1-1301 RGARASLLPT DAEPDSPRTP KEASSDFSPQ NGGPGH