KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:22:31 2014 Check: 00 .. Name: ENSP00000352035/1-872 Len: 1353 Check: 8956 Weight: 1.00 Name: ENSTTRP00000001723/1-880 Len: 1353 Check: 8929 Weight: 1.00 Name: ENSBTAP00000003944/1-776 Len: 1353 Check: 2181 Weight: 1.00 Name: bmy_14482T0/1-738 Len: 1353 Check: 53 Weight: 1.00 Name: BACU011243/1-1254 Len: 1353 Check: 4670 Weight: 1.00 // 1 50 ENSP00000352035/1-872 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001723/1-880 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003944/1-776 ---------- ---------- ---------- ---------- ---------- bmy_14482T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU011243/1-1254 MGKEKTHINI VVIGHVDSGK STTTGHLIYK CGGIDKRTIE KFEKEAAEMG 51 100 ENSP00000352035/1-872 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001723/1-880 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003944/1-776 ---------- ---------- ---------- ---------- ---------- bmy_14482T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU011243/1-1254 KGSFKYAWVL DKLKAERERG ITIDISLWKF ETTKYYITII DAPGHRDFIK 101 150 ENSP00000352035/1-872 ---------- ---------- --------MV QKSRNGGVYP GPSGEKKLKV ENSTTRP00000001723/1-880 ---------- ---------- --------MV QKSRNVGVYP GPSEEKKLKV ENSBTAP00000003944/1-776 ---------- ---------- ---------- ---------- ---------- bmy_14482T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU011243/1-1254 NMITGTSQAD CAVLIVAAGV GEFEAGISKN GQTREHALLA YTLGVKQLIV 151 200 ENSP00000352035/1-872 GFVGLDPGAP DSTR------ ---------- ---------- ---------- ENSTTRP00000001723/1-880 GFVGLDPGAP DSTR------ ---------- ---------- ---------- ENSBTAP00000003944/1-776 ---------- ---------- ---------- ---------- ---------- bmy_14482T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU011243/1-1254 GVNKMDSTEP AYSEKRYDEI VKEVSAYIKK IGYNPATVPF VPISGWHGDN 201 250 ENSP00000352035/1-872 ---------- ---------- ---------- ---------- --DGALLIAG ENSTTRP00000001723/1-880 ---------- ---------- ---------- ---------- --VGALIIAG ENSBTAP00000003944/1-776 ---------- ---------- ---------- ---------- ---------- bmy_14482T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU011243/1-1254 MLEPSPNMPW FKGWKVERKE GNASGVSLLE ALDTILPPTR PTDKPLRLPL 251 300 ENSP00000352035/1-872 SEAPKRGSI- ---------- ---------- ---------- ---------- ENSTTRP00000001723/1-880 SEAPKRGSI- ---------- ---------- ---------- ---------- ENSBTAP00000003944/1-776 ---------- ---------- ---------- ---------- ---------- bmy_14482T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU011243/1-1254 QDVYKIGGIG TVPVGRVETG ILRPGMVVTF APVNITTEVK SVEMHHEALS 301 350 ENSP00000352035/1-872 ---------- ---------L SKPRAGGAGA GKPPKRNAFY RKLQNFLYNV ENSTTRP00000001723/1-880 ---------- ---------L SKPRAGGAGA GKPPKR-AFY RKLQNFLYNV ENSBTAP00000003944/1-776 ---------- ---------- ---------- ---------- ---------- bmy_14482T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU011243/1-1254 EALPGDNVGF NVKNVSVKDI RRGNVCGDSK SDPPQEAAQF TSQVIILNHP 351 400 ENSP00000352035/1-872 LERPRGWAFI YHAY------ ---------- ---------- ---------- ENSTTRP00000001723/1-880 LERPRGWAFI YHAY------ ---------- ---------- ---------- ENSBTAP00000003944/1-776 ---------- ---------- ---------- ---------- ---------- bmy_14482T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU011243/1-1254 GQISAGYSPV IDCHTAHIAC KFAELKEKID RRSGKKLEDN PKSLKSGDAA 401 450 ENSP00000352035/1-872 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001723/1-880 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003944/1-776 ---------- ---------- ---------- ---------- ---------- bmy_14482T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU011243/1-1254 IVEMVPGKPM CVESFSQYPP LGVNRASDWA EQKGIPQQGA RATSPGDGLQ 451 500 ENSP00000352035/1-872 ---------- ---------- ---------- -----VFLLV FSCLVLSVFS ENSTTRP00000001723/1-880 ---------- ---------- ---------- -----VFLLV FSCLVLSVFS ENSBTAP00000003944/1-776 ---------- ---------- ---------- ------FLLV FSCLVLSVFS bmy_14482T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU011243/1-1254 DLAADGPWMD GTDGQGKPAS SPLTPLCSEV FWLHRLFLLV FSCLVLSVFS 501 550 ENSP00000352035/1-872 TIKEYEKSSE GALYILEIVT IVVFGVEYFV RIWAAGCCCR YRGWRGRLKF ENSTTRP00000001723/1-880 TIKEYEKSSE GALYILXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000003944/1-776 TIKEYEKSSE GALYILEIVT IVVFGVEYFV RIWAAGCCCR YRGWRGRLKF bmy_14482T0/1-738 ---------- ---------- ---------- ---------- ---------- BACU011243/1-1254 TIKEYEKSSE GALYILEIVT IVVFGVEYFV RIWAAGCCCR YRGWRGRLKF 551 600 ENSP00000352035/1-872 ARKPFCVIDI MVLIASIAVL AAGSQGNVFA TSALRSLRFL QILRMIRMDR ENSTTRP00000001723/1-880 XXXXXXXXXV MVLIASIAVL AAGSQGNVFA TSALRSLRFL QILRMIRMDR ENSBTAP00000003944/1-776 ARKPFCVIDI MVLIASIAVL AAGSQGNVFA TSALRSLRFL QILRMIRMDR bmy_14482T0/1-738 ---------- MVLIASIAVL AAGSQGNVFA TSALRSLRFL QILRMIRMDR BACU011243/1-1254 ARKPFCVIDI MVLIASIAVL AAGSQGNVFA TSALRSLRFL QILRMIRMDR 601 650 ENSP00000352035/1-872 RGGTWKLLGS VVYAHSKELV TAWYIGFLCL ILASFLVYLA EKGENDHFDT ENSTTRP00000001723/1-880 RGGTWKLLGS VVYAHSKELV TAWYIGFLCL ILASFLVYLA EKGENDHFDT ENSBTAP00000003944/1-776 RGGTWKLLGS VVYAHSKELV TAWYIGFLCL ILASFLVYLA EKGENDHFDT bmy_14482T0/1-738 RGGTWKLLGS VVYAHSKELV TAWYIGFLCL ILASFLVYLA EKGENDHFDT BACU011243/1-1254 RGGTWKLLGS VVYAHSKELV TAWYIGFLCL ILASFLVYLA EKGENDHFDT 651 700 ENSP00000352035/1-872 YADALWWGLI TLTTIGYGDK YPQTWNGRLL AATFTLIGVS FFALPAGILG ENSTTRP00000001723/1-880 YADALWWGLI TLTTIGYGDK YPQTWNGRLL AATFTLIGVS FFALPAGILG ENSBTAP00000003944/1-776 YADALWWGLI TLTTIGYGDK YPQTWNGRLL AATFTLIGVS FFALPAGILG bmy_14482T0/1-738 YADALWWGLI TLTTIGYGDK YPQTWNGRLL AATFTLIGVS FFALPAGILG BACU011243/1-1254 YADALWWGLI TLTTIGYGDK YPQTWNGRLL AATFTLIGVS FFALPAGILG 701 750 ENSP00000352035/1-872 SGFALKVQEQ HRQKHFEKRR NPAAGLIQSA WRFYATNLSR TDLHSTWQYY ENSTTRP00000001723/1-880 SGFALKVQEQ HRQKHFEKRR NPAAGLIQSA WRFYATNLSR TDLHSTWQYY ENSBTAP00000003944/1-776 SGFALKVQEQ HRQKHFEKRR NPAAGLIQSA WRFYATNLSR TDLHSTWQYY bmy_14482T0/1-738 SGFALKVQEQ HRQKHFEKRR SPAAGLIQSA WRFYATNLSR TDLRSTWQYY BACU011243/1-1254 SGFALKVQEQ HRQKHFEKRR NPAAGLIQSA WRFYATNLSR TDLHSTWQYY 751 800 ENSP00000352035/1-872 ERTVTVPMYS SQTQTYGASR LIPPLNQLEL LRNLKSKSGL AFRKDPPPEP ENSTTRP00000001723/1-880 ERTVTVPMY- ---------R LIPPLNQLEL LRNLKSKSGL TFRKEPQPEP ENSBTAP00000003944/1-776 ERTVTVPMYS SQTQTYGASR LIPPLNQLEL LRNLKSKSGL TFRKEPQPEP bmy_14482T0/1-738 ERTATVPMY- ---------R LIPPLNQLEL LRNLKSKSGL TFRKEPQPEP BACU011243/1-1254 ERTVTVPMY- ---------R LIPPLNQLEL LRNLKSKSGL TFRKEPQPEP 801 850 ENSP00000352035/1-872 SP-------- -------SKG SPCRGPLCGC C--------- ---------- ENSTTRP00000001723/1-880 SP-------- ---------- ---------- ---------- ---------- ENSBTAP00000003944/1-776 SP-------- -------SKG RRCAESLCGC C--------- ---------- bmy_14482T0/1-738 SPRSVPPAPA ASAPALCVLG ERGLPRGCAC SCVLLRVDPC LLVMWALKSR BACU011243/1-1254 SP-------- ---------- ---------- ---------- ---------- 851 900 ENSP00000352035/1-872 ---------- -PGRSSQKVS LKDRVFS--- --------SP RGVAAKGKGS ENSTTRP00000001723/1-880 ---------- -----SQKVS LKDRVFS--- --------SP RGVAAKGKGS ENSBTAP00000003944/1-776 ---------P GHARSSQKVS LKDRVFS--- --------SP RGVAAKGKGS bmy_14482T0/1-738 FLCPRPLPGP GPARQLRGSS CPPVTVAPRT GRGGLLGEHP RGVAAKGKGS BACU011243/1-1254 ---------- ---------- ---------- --------SP RGVAAKGKGS 901 950 ENSP00000352035/1-872 PQAQTVRRSP SADQSLEDSP SKVPKSWSFG DRSRARQAFR IKGAASRQNS ENSTTRP00000001723/1-880 PQAQTVRRSP SADQSLEDSP SKVPKSWSFG ERGRARQAFR ARGAASRQNS ENSBTAP00000003944/1-776 PQAQTVRRSP SADQSLEDSP SKVPKSWSFG ERGRARQAFR ARGAASRQNS bmy_14482T0/1-738 PQAQTVRRSP SADQSLEDSP SKVPKSWSFG ERGRARQAFR ARGAASRQNS BACU011243/1-1254 PQAQTVRRSP SADQSLEDSP SKVPKSWSFG ERGRARQAFR ARGAASRQNS 951 1000 ENSP00000352035/1-872 EEASLPGEDI VDD-KSCPCE FVTEDLTPGL KVSIRAVCVM RFLVSKRKFK ENSTTRP00000001723/1-880 EEASLPGEDI VDD-KSCNCE FVTEDLTPGL KVSIKALCVM RFLVSKRKFK ENSBTAP00000003944/1-776 EEASLPGEDI VDDNKSCNCE FVTEDLTPGL KVSIRAVCVM RFLVSKRKFK bmy_14482T0/1-738 EEASLPGEDI VDDNKSCNCE FVTEDLTPGL KVSIRAV-VM RFLVSKRKFK BACU011243/1-1254 EEASLPGEDI VDDNKSCNCE FVTEDLTPGL KVSIRAVCVM RFLVSKRKFK 1001 1050 ENSP00000352035/1-872 ESLRPYDVMD VIEQYSAGHL DMLSRIKSLQ ---------- ---------- ENSTTRP00000001723/1-880 ESLRPYDVMD VIEQYSAGHL DMLSRIKNLQ SRIDMIVGPP PPSTPRHKKY ENSBTAP00000003944/1-776 ESLRPYDVMD VIEQYSAGHL DMLSRIKNLQ ---------- ---------- bmy_14482T0/1-738 ESLRPYDVMD VIEQYSAGHL DMLSRIKNLQ ---------- ---------- BACU011243/1-1254 ESLRPYDVMD VIEQYSAGHL DMLSRIKNLQ --IDMIVGPP PPSTPRHKKY 1051 1100 ENSP00000352035/1-872 ---------- ------SRVD QIVGRGPAIT DKDRTKGPAE AELPEDPSMM ENSTTRP00000001723/1-880 PTKGPTAPPR ESPQYSPRVD QIVGRGPAIA DKDRGKGPAE AELPEDPSMM ENSBTAP00000003944/1-776 ---------- ------SRVD QIVGRGPTMA DKDRGKGPAE AELPEDPSMM bmy_14482T0/1-738 ---------- --------VD QIVGRGPAIA DKDRGKGPAE AELPEDPSMM BACU011243/1-1254 PTKGPTAPPR ESPQYSPRVD QIVGRGPAIA DKDRGKGPAE AELPEDPSMM 1101 1150 ENSP00000352035/1-872 GRLGKVEKQV LSMEKKLDFL VNIYMQRMGI PPTETEAYFG AKEPEPAPPY ENSTTRP00000001723/1-880 GRLGKVEKQV LSMEKKLDFL VNIYTQRMGV PPTETEAYFG AKEPEPAPPY ENSBTAP00000003944/1-776 GRLGKVEKQV LSMEKKLDFL VNIYMQRMGV PPTETEAYFG AKEPEPAPPY bmy_14482T0/1-738 GRLGKVEKQ- ----KKLDFL VNIYTQRMGV PPTETEAYFG AKEPEPAPPY BACU011243/1-1254 GRLGKVEKQV LSMEKKLDFL VNIYTQRMGI PPTETEAYFG AKEPEPAPPY 1151 1200 ENSP00000352035/1-872 HSPEDSREHV DRHGCIVKIV RSSSSTGQKN FSAPPAAPPV QCPPSTSWQP ENSTTRP00000001723/1-880 HSPEDSRDHG GRSGCIIKLI RSTSSMGQKN FSAPPAAPPA QCPPSTSWQQ ENSBTAP00000003944/1-776 HSPEDSRDHG GRSGCIIKLV RSTSSVGQKN FAAPPPAPPA QCPPSTSWQQ bmy_14482T0/1-738 HSPEDSRDHG GRNGCIIKLI RSASSMGQKN FSAPPAAPPA QCPPSTSWQQ BACU011243/1-1254 HSPEDSRDHG GRNGCIIKLI RSASSMGQKN FSAPPAAPPA QCPPSTSWQQ 1201 1250 ENSP00000352035/1-872 QSHPRQGHGT SPVGDHGSLV RIPPPPAHER SLSAYGGGNR ASMEFLRQED ENSTTRP00000001723/1-880 QCHPRQGHGT SPVGDHGSLV RIPPPPAHER SLSAYSGGHR ASTELLRSED ENSBTAP00000003944/1-776 QCYPRPGHGT SPVGDHSSLV RIPPPPAHER SLSAYSGGHR ASTEFLRPED bmy_14482T0/1-738 QCHPRQGHGT SPVGDHGSLV RIPPPPAHER SLSAYSGGHR ASTEFLRSED BACU011243/1-1254 QCHPRQGHGT SPVGDHGSLV RIPPPPAHER SLSAYSGGHR ASTEFLRSED 1251 1300 ENSP00000352035/1-872 TPGCRPPEGN LRDSDTSISI PSVDHEELER SFSGFSISQS KENLDALNSC ENSTTRP00000001723/1-880 GPACRPHEGA LRDSDTSISI PSVDHEELER SFSGFSISQS KENLDALNSC ENSBTAP00000003944/1-776 APACRPHEGA LRDSDTSISI PSVDHEELER SFSGFSISQS KENLDALNSC bmy_14482T0/1-738 ALACRPHEGA LRDSDTSISI PSVDHEELER SFSGFSISQS KENLDALGSC BACU011243/1-1254 APACRPHEGA LRDSDTSISI PSVDHEELER SFSGFSISQS KENLDALGSC 1301 1350 ENSP00000352035/1-872 Y-AAVAPCAK VRPYIAEGES DTDSDLCTPC GPPPRSATGE GPFGDVGWAG ENSTTRP00000001723/1-880 YAAAAAPCAK VRPYIAEGES DTDSDLCTPC GPPPRSATGE GPFGDVGWAG ENSBTAP00000003944/1-776 Y-AAVAPCAK VRPYIAEGES DTDSDLCTPC GPPPRSATGE GPFGDMGWAG bmy_14482T0/1-738 Y-AAVAPCAK VRPYIAEGES DTDSDLCTPC GPPPRSATGE GPFGDVGWAG BACU011243/1-1254 Y-AAVAPCAK VRPYIAEGES DTDSDLCTPC GPPPRSATGE GPFGDMGWAG 1351 1400 ENSP00000352035/1-872 PRK ENSTTRP00000001723/1-880 PRK ENSBTAP00000003944/1-776 PRK bmy_14482T0/1-738 PRK BACU011243/1-1254 PRK