KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:51 2014 Check: 00 .. Name: ENSP00000315351/1-521 Len: 1096 Check: 522 Weight: 1.00 Name: ENSTTRP00000005436/1-522 Len: 1096 Check: 5701 Weight: 1.00 Name: ENSBTAP00000003690/1-544 Len: 1096 Check: 8866 Weight: 1.00 Name: bmy_14218T0/1-543 Len: 1096 Check: 506 Weight: 1.00 Name: BACU011050/1-1095 Len: 1096 Check: 6140 Weight: 1.00 // 1 50 ENSP00000315351/1-521 -MLPRRPLAW ---------- -PAWL----- ---------- ---------- ENSTTRP00000005436/1-522 -MMSHLAPRR ---------- -PAWL----- ---------- ---------- ENSBTAP00000003690/1-544 MMMPRLVPRW ---------- -PAWLFC--- ---------- ---------- bmy_14218T0/1-543 -MMSRLAPRW ---------- -PAWL----- ---------- ------FW-- BACU011050/1-1095 -TLTYDTLRF AEFEDFPETS EPLWILGRKY SIFTEKDEIL ADVASRLWFT 51 100 ENSP00000315351/1-521 ---------- --------LR GA-------- ---------- ---------- ENSTTRP00000005436/1-522 ---------- --------LR PA-------- ---------- ---------- ENSBTAP00000003690/1-544 ---------- --------WR AA--CIQGAS VRQ------- KMW------- bmy_14218T0/1-543 ---------- --------WR AA--CAQGVS AQQ------- RTW------- BACU011050/1-1095 YRKNFPAIGG TGPTSDTGWG CMLRCGQMIF AQALVCRHLG RDWRWTRRAR 101 150 ENSP00000315351/1-521 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005436/1-522 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003690/1-544 ---------- ---------- ---------- ---------- ---------- bmy_14218T0/1-543 ---------- ---------- ---------- ---------- ---------- BACU011050/1-1095 QPDSYFSVLR AFLDRKDSCY SIHQIAQMGV GEGKSIGQWY GPNTVAQVLK 151 200 ENSP00000315351/1-521 ---------- ---------- ---------- ---------- --PG------ ENSTTRP00000005436/1-522 ---------- ---------- ---------- ---------- --QG------ ENSBTAP00000003690/1-544 ---------- ---------- ---------- ------AGPS KIPG------ bmy_14218T0/1-543 ---------- ---------- ---------- ------AGAS RIPG------ BACU011050/1-1095 KLAVFDTWSA LAVHVAMDNT VVMEDIRRLC RSSLPCAGAA AFPADSDRLC 201 250 ENSP00000315351/1-521 ---AAG---- ----SW---- ---------- ---------- ---------- ENSTTRP00000005436/1-522 ---VSD---- ----PW---- ---------- ---------- ---------- ENSBTAP00000003690/1-544 LGGPRG---- ----AW---- ---------- ---------- ---------- bmy_14218T0/1-543 ---PGG---- ----PW---- ---------- ---------- ---------- BACU011050/1-1095 NGFPAGAEVS SRPSPWRPLV LLIPLRLGLT DINAAYAETL KHCFMMPQSL 251 300 ENSP00000315351/1-521 -GRPVGPL-- ---------- ---------- ---------- ---------- ENSTTRP00000005436/1-522 -DRQTSPL-- ---------- ---------- ---------- ---------- ENSBTAP00000003690/1-544 ---GTSPL-- ---------- ---------- ---------- ---------- bmy_14218T0/1-543 GATGTSPL-- ---------- ---------- ---------- ---------- BACU011050/1-1095 GVIGGKPNSA RYFIGYVGEE LIYLDPHTTQ PALQAAEHCP IPDESFHCQH 301 350 ENSP00000315351/1-521 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005436/1-522 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003690/1-544 ---------- ---------- ---------- ---------- ---------- bmy_14218T0/1-543 ---------- ---------- ---------- ---------- ---------- BACU011050/1-1095 PPSRMSIAEL DPSIAVGFFC GTEDDFNDWC QQVRKLSLRG GALPMFELVE 351 400 ENSP00000315351/1-521 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005436/1-522 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003690/1-544 ---------- ---------- ---------- ---------- ---------- bmy_14218T0/1-543 ---------- ---------- ---------- ---------- ---------- BACU011050/1-1095 RQPSHLACPD VLNLSLGIEN LPCELQRNFQ LMRELDQRTE DKKAEIDILA 401 450 ENSP00000315351/1-521 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005436/1-522 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003690/1-544 ---------- ---------- ---------- ---------- ---------- bmy_14218T0/1-543 ---------- ---------- ---------- ---------- ---------- BACU011050/1-1095 AEYISTVKSL SADQRVEHLQ KIQSAYSKCR EYSDDKVQLA MQTYEMVDKH 451 500 ENSP00000315351/1-521 ---------- ---------- ---------- ---------- ------ARRG ENSTTRP00000005436/1-522 ---------- ---------- ---------- ---------- ------VRRG ENSBTAP00000003690/1-544 ---------- ---------- ---------- ---------- ------VPRG bmy_14218T0/1-543 ---------- ---------- ---------- ---------- ------VRRG BACU011050/1-1095 IRRLDADLAR FEADLKDKME GSDFESSGGR GLKSKDVTLQ PLHGPGVRKR 501 550 ENSP00000315351/1-521 CCSA-PGTP- ---------- ---------- ---------- ---------- ENSTTRP00000005436/1-522 SSSAFSCAP- ---------- ---------- ---------- ---------- ENSBTAP00000003690/1-544 SCSASSRTP- ---------- ---------- ---------- ---------- bmy_14218T0/1-543 SSSASSCAP- ---------- ---------- ---------- ---------- BACU011050/1-1095 TVGSRPCVQG PAVSVWSPVG IRASAEHGRS EFTDTILSVH PSDVLDMPVD 551 600 ENSP00000315351/1-521 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000005436/1-522 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003690/1-544 ---------- ---------- ---------- ---------- ---------- bmy_14218T0/1-543 ---------- ---------- ---------- ---------- ---------- BACU011050/1-1095 PNEPTYCLCH QVSYGEMIGC DNPDCPIEWF HFACVDLTTK PKGKWSVWAP 601 650 ENSP00000315351/1-521 ---------- --------EV PLTRERYPVR RLPFSTVSKQ DLAAFERIVP ENSTTRP00000005436/1-522 ---------- --------EV VLTRERYSVR RLPFSVVSED DLAALERIVP ENSBTAP00000003690/1-544 ---------- --------EV TLTPERYPVQ RLPFSVVSED DLAALERVVP bmy_14218T0/1-543 ---------- --------EV MLTRERYSVQ RLPFSVVSED DLAALERIVP BACU011050/1-1095 AFLENWVLST VRSGKEEEEV TLTRERYSVR RLPFSVVSED DLAALERIVP 651 700 ENSP00000315351/1-521 GGVVTDPEAL QAPNVDWLRT LRGCSKVLLR PRTSEEVSHI LRHCHERNLA ENSTTRP00000005436/1-522 GRVITDPEEL EAPNVDWLRT VRXXXXXXXX XXXXXXXXXX XXYCHERNLA ENSBTAP00000003690/1-544 GRVITDPEEL EPPNVDWLRT VRGSSKVLLR PRTTQEVAHI LRYCHERNLA bmy_14218T0/1-543 GRVITDPEEL EAPNVDWLRT VRGSSKVLLR PRTSQEVAHI LRYCHERNLA BACU011050/1-1095 GGVITDPEEL EAPNVDWLRT VRGSSKVLLR PRTSQEVAHI LRYCHERNLA 701 750 ENSP00000315351/1-521 VNPQGGNTGM VGGSVPVFDE IILSTARMNR VLSFHSVSGI LVCQAGCVLE ENSTTRP00000005436/1-522 VSPQGGNTGM VGGSTPVFDE IIVSTALMNQ IVSFHNVSGV LVCQAGCVLE ENSBTAP00000003690/1-544 VNPQGGNTGM VGGSTPVFDE IILSTALMNQ VLSFHDVSGV LVCQAGCVLE bmy_14218T0/1-543 VSPQGGNTGM VGGSTPVFDE IIVSTALMNQ IVSFHNVSGV LVCQAGCVLE BACU011050/1-1095 VSPQGGNTGM VGGSTPVFDE IIVSTALMNQ IVSFHNVSGV LVCQAGCVLE 751 800 ENSP00000315351/1-521 ELSRYVEERD FIMPLDLGAK GSCHIGGNVA TNAGGLRFLR YGSLHGTVLG ENSTTRP00000005436/1-522 ELSRYVEERG FVVPLDLGAK GSCHIGGNVA TNAGGLRLLR YGSLRGTVLG ENSBTAP00000003690/1-544 ALSQYVEERG FIMPLDLGAK GSCHIGGNVA TNAGGLRVLR YGSLRGTVLG bmy_14218T0/1-543 ELSRYVEERG FVMPLDLGAK GSCHIGGNVA TNAGGLRFLR YGSLRGTVLG BACU011050/1-1095 ELSRYVEERG FVMPLDLGAK GSCHIGGNVA TNAGGLRFLR YGSLRGTVLG 801 850 ENSP00000315351/1-521 LEVVLADGTV LDCLTSLRKD NTGYDLKQLF IGSEGTLGII TTVSILCPPK ENSTTRP00000005436/1-522 LEVXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000003690/1-544 LEVVLADGTV LNCLTSLRKD NTGYDLKQLF IGSEGTLGVI TAVSILCPPK bmy_14218T0/1-543 LEVVLADGTI LNCLTSLRKD NTGYDLKQLF IGSEGTLGVI TAVSILCPPK BACU011050/1-1095 LEVVLAEGTI LNCLTSLRKD NTGYDLKQLF IGSEGTLGVI TAVSILCPPK 851 900 ENSP00000315351/1-521 PRAVNVAFLG CPGFAEVLQT FSTCKGMLGE ILSAFEFMDA VCMQLVGRHL ENSTTRP00000005436/1-522 PSAVNVAFLG CPGFAEVLQT FCTCRGMLGE ILSAFEFMDA ECMKLVGLHL ENSBTAP00000003690/1-544 PSTVNVAFLG CPGFAEVLQT FRTCRAMLGE ILSAFEFMDA ECMKLVRLHL bmy_14218T0/1-543 PSAVNVAFLG CPGFAEVLQT FCTCRGMLGE ILSAFEFMDA ECMKLVGLHL BACU011050/1-1095 PSAVNVAFLG CPGFAEVLQT FCTCRGMLGE ILSAFEFMDA ECVKLVGRHL 901 950 ENSP00000315351/1-521 HLASPVQESP FYVLIETSGS NAGHDAEKLG HFLEHALGSG LVTDGTMATD ENSTTRP00000005436/1-522 HLACPVQESP FYVLIETSGS GAGHDAEKLS GFLEQVLGSG LVTDGTLATD ENSBTAP00000003690/1-544 GLSCPVQESP FYVLIETAGS GPGHDAEKLG CFLEQVLDSG LVTDGTLGSD bmy_14218T0/1-543 RLACPVQESP FYVLIETSGS GAGHDAEKLS GFLEQVLGSG LVTDGTLATD BACU011050/1-1095 RLACPVQESP FYVLIETSGS GAGHDAEKLS GFLEQVLGSG LVTDGTLAAD 951 1000 ENSP00000315351/1-521 QRKVKMLWAL RERITEALSR DGYVYKYDLS LPVERLYDIV TDLRARLGPH ENSTTRP00000005436/1-522 QRRIKMLWAL RERITEALSR DGYVYKYDLS LPLDRLYDLV SDLRARLGLH ENSBTAP00000003690/1-544 ERRIKMLWAL RERITEALSR DGYVYKYDLS LPLDRLYDLV GDLRARLGPS bmy_14218T0/1-543 QRRIKMLWAL RERITEALSR DGYVYKYDLS LPLDRLYDLV SDLRARLGLH BACU011050/1-1095 QRRAKMLWAL RERITEALSR DGYVYKYDLS LPLDRLYDLV SDLRARLGLH 1001 1050 ENSP00000315351/1-521 AKHVVGYGHL GDGNLHLNVT AEAFSPSLLA ALEPHVYEWT AGQQGSVSAE ENSTTRP00000005436/1-522 AKHVVGYGHL GDGNLHLNVT AEAFSPSLLG TLEPYVYEWT ARQRGSVSAE ENSBTAP00000003690/1-544 AKHVVGYGHL GDGNLHLNVT SEAFSTSLLG ALEPYVYEWT AGQRGSVSAE bmy_14218T0/1-543 AKHVVGYGHL GDGNLHLNVT AEAFSPSLLG TLEPYVYEWV ARQRGSVSAE BACU011050/1-1095 AKHVVGYGHL GDGNLHLNVT AEAFSPSLLG TLEPYVYEWV ARQRGSVSAE 1051 1100 ENSP00000315351/1-521 HGVGFRKRDV LGYSKPPGAL QLMQQLKALL DPKGILNPYK TLPSQA ENSTTRP00000005436/1-522 HGLGFKKKDV LGYSKPPEAL QLMQQLKALL DPKGILNPYK TLPTLT ENSBTAP00000003690/1-544 HGLGFKKKDV LGYSKPPEAL QLMRQLKALL DPKGILNPYK MLPTHA bmy_14218T0/1-543 HGLGFKKKDV LGYSKPPEAL QLMQQLKALL DPKGILNPYK TLPTRT BACU011050/1-1095 HGLGFKKKDV LGYSKPPEAL QLMQQLKALL DPKGILNPYK TLPTRT