KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:48 2014 Check: 00 .. Name: ENSTTRP00000003001/1-403 Len: 420 Check: 157 Weight: 1.00 Name: ENSBTAP00000003665/1-404 Len: 420 Check: 2959 Weight: 1.00 Name: ENSP00000307833/1-403 Len: 420 Check: 640 Weight: 1.00 Name: bmy_01529T0/1-400 Len: 420 Check: 8520 Weight: 1.00 Name: BACU004841/1-388 Len: 420 Check: 5106 Weight: 1.00 // 1 50 ENSTTRP00000003001/1-403 MEPVGGGGGG DRRGSSPADP RSTFVLSNLA EVVERVLTFL PAKALLRVAG ENSBTAP00000003665/1-404 MERV--GGGG DCCGSSSADP RSTFVLSNLA EVVERVFTFL PAKALLRVAG ENSP00000307833/1-403 MEPV--GCCG ECRGSS-VDP RSTFVLSNLA EVVERVLTFL PAKALLRVAC bmy_01529T0/1-400 MEPVGGGGGG DRRGSSPADP RSTFVLSNLA EVVERVLTFL PAKALLRVAG BACU004841/1-388 MEPVGGGGGG DRRGSSPADP RSTFVLSNLA EVVERVLTFL PAKALLRVAG 51 100 ENSTTRP00000003001/1-403 VCRLWRECVR RVLRTHRSVT WISARLAIAG HLEEHCLVRV VAEKLE---- ENSBTAP00000003665/1-404 VCRLWRECVR RVLRTHRNVT WISALSADPC HLAQHCLVRV VAEELE---- ENSP00000307833/1-403 VCRLWRECVR RVLRTHRSVT WISAGLAEAG HLEGHCLVRV VAEELE---- bmy_01529T0/1-400 VCRLWRECVR RVLRTHRSVT WISAGPADAG HLEEHCLVRV ---------- BACU004841/1-388 VCRLWRECVR RVLRTHRSVT WISAGPADAG HLEEHCLVRV VAEKLEASKK 101 150 ENSTTRP00000003001/1-403 ---------- NVHILPQTVL YMADETS--S LEECRCHKRX XXXXXXXXXX ENSBTAP00000003665/1-404 ---------- NVHILPQTVL YMADSENFIN LEECRGHKRA RKRTTMEAAF ENSP00000307833/1-403 ---------- NVRILPHTVL YMADSETFIS LEECRGHKRA RKRTSMETAL bmy_01529T0/1-400 ---------- NVHILPRTVL YMADSETFIS LEECRGHKRA RKRTTMEAAF BACU004841/1-388 GCCVQSFAGS NVHILPRTVL YMADSETFIS LEECRGHKR- ---------- 151 200 ENSTTRP00000003001/1-403 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000003665/1-404 ALEKLFPKQC QVLGIVTPGI VVTPIGSRSN RPQEIEIGES GFALLFPQIE ENSP00000307833/1-403 ALEKLFPKQC QVLGIVTPGI VVTPMGSGSN RPQEIEIGES GFALLFPQIE bmy_01529T0/1-400 ALETLFPKQC QVLGIVTPGI VVTPMGSSSN RPQEIEIGES GFALLFPQIE BACU004841/1-388 ---------- ---------- -VTPMGSSSN RPQEIEIGES GFALLFPQIE 201 250 ENSTTRP00000003001/1-403 XXXXXXXXXX XXXXXXXXXX XXXXXXXLLD NPELRVVLVF GYNCCKVGAN ENSBTAP00000003665/1-404 GIKIKPFHFI KDPKKLTLER HQLTEVGLLD NPELRVVLVF GYNCCKVGAS ENSP00000307833/1-403 GIKIQPFHFI KDPKNLTLER HQLTEVGLLD NPELRVVLVF GYNCCKVGAS bmy_01529T0/1-400 GIKIKPFHFI KDPKKLTLER HQLTEVGLLD NPELRVVLVF GYNCCKVGAS BACU004841/1-388 GIKIKPFHFI KDPKKLTLER HQLTEVGLLD NPELRVVLVF GYNCCKVGAS 251 300 ENSTTRP00000003001/1-403 NYLQHVVSTF SDMNVILAGG QVDNLASLTS -KNPLDIDAT GVVGLSFSGH ENSBTAP00000003665/1-404 NYLQRVVSTF SDMNVILAGG QVDNLASLTS EKSPLDIDAT GVVGLSFSGH ENSP00000307833/1-403 NYLQQVVSTF SDMNIILAGG QVDNLSSLTS EKNPLDIDAS GVVGLSFSGH bmy_01529T0/1-400 NYLQRVVSTF SDMNVILAGG QVDNLASLTS EKNPLDIDAT GVVGLSFSGH BACU004841/1-388 NYLQRVVSTF SDMNVILAGG QVDNLASLTS EKNPLDIDAT GVVGLSFSGH 301 350 ENSTTRP00000003001/1-403 RIQSATVLLN EDVNDEKTAE AAMQRLKAAN IPEQNTIGFM FACVGRGFQY ENSBTAP00000003665/1-404 QVQGATVLLN EDVNDEKTAD AAMQRLKAAN IPEQNTIGFM FACVGRGSQY ENSP00000307833/1-403 RIQSATVLLN EDVSDEKTAE AAMQRLKAAN IPEHNTIGFM FACVGRGFQY bmy_01529T0/1-400 RIQSATVLLN EDVNDEKTAE AAMQRLKAAN IPEQNTIGFM FACVGRGFQY BACU004841/1-388 RIQSATVLLN EDVNDEKTAE AAMQRLKAAN IPEQNTIGFM FACVGRGFQY 351 400 ENSTTRP00000003001/1-403 YRDKGNVEAD AFRKFFPSVP LFGFFGNGEI GCDRIVTGNF ILKKCNEVKD ENSBTAP00000003665/1-404 YRAKKNVEAD AFRKFFPSVP LFGFFGNGEI GCDRIVTGNF ILKKCNEFNY ENSP00000307833/1-403 YRAKGNVEAD AFRKFFPSVP LFGFFGNGEI GCDRIVTGNF ILRKCNEVKD bmy_01529T0/1-400 YRAKGNVEAD AFRKFFPSVP LFGFFGNGEI GCDRIVTGNF ILKKCNEVKD BACU004841/1-388 YRAKGNVEAD AFRKFFPSVP LFGFFGNGEI GCDRIVTGNF ILKKCNEVKD 401 450 ENSTTRP00000003001/1-403 DDLFHSYTTI MALIHLGSSK ENSBTAP00000003665/1-404 NDLFHSYTTI MALIHLGSSK ENSP00000307833/1-403 DDLFHSYTTI MALIHLGSSK bmy_01529T0/1-400 DDLFHSYTTI MALIHLGSSK BACU004841/1-388 DDLFHSYTTI MALIHLGSSK