KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:21:44 2014 Check: 00 .. Name: ENSP00000340954/1-572 Len: 585 Check: 9660 Weight: 1.00 Name: ENSBTAP00000003652/1-583 Len: 585 Check: 3766 Weight: 1.00 Name: bmy_00598T0/1-557 Len: 585 Check: 7067 Weight: 1.00 Name: ENSTTRP00000016160/1-574 Len: 585 Check: 4784 Weight: 1.00 // 1 50 ENSP00000340954/1-572 MRRHMVTYAW QLLKKELGLY QLAMDIIIMI RVCKMFRQGL RGFREYQIIE ENSBTAP00000003652/1-583 MNRYMVSRSW QILRKKLGLY HLSMDIIMMN RVCKMFRQGL RGFREYQIIE bmy_00598T0/1-557 ---------- ---------- ---MDIIMMN RVCRMFRRGL RGFREYQIIE ENSTTRP00000016160/1-574 MKRYMVSHSW QILKKELGLY QLTMDIIRMN RVCRMFRQGL RGLREYQIIE 51 100 ENSP00000340954/1-572 TAHWKHPIFS FWDKKMQSRV TFDTMDFIAE EGHFPPKAIQ IMQKKPSWRT ENSBTAP00000003652/1-583 TAHRKHPIFS FWDKKKEGRI TFDTMDFVAE SGHFPPRAIQ ITQKQPAWRA bmy_00598T0/1-557 TAHRKHPIFS FWDRKKQGRI TFDTMDFIAE SGHFPPRAIQ ITQKKPAWRA ENSTTRP00000016160/1-574 TAHRKHPIFS FWDKKKQGRI TFDTMDFIGE SEHFPPRAIQ ITQKKPAWRT 101 150 ENSP00000340954/1-572 EDEIQAVCNI LQVLDSYRNY AEPLQLLLAK VMRFERFGRR RVIIKKGQKG ENSBTAP00000003652/1-583 EHEIQSLCNL LQVLDSYRNY SEPLQLLLAK VMRFERFGRR RVIVKKGQRG bmy_00598T0/1-557 EREIQSLCNL LQVLDSYRNY SEPLQLLLAK VMRFERFGRR RVIVKKGQRG ENSTTRP00000016160/1-574 EREIQSLCNL LQVLDSYQNY SEPLQLLLAK VMRFERFGRR RVIIRKGQRA 151 200 ENSP00000340954/1-572 NSFYFIYLGT VAITKDEDGS SAFLDPHPKL LHKGSCFGEM DVLHASVRRS ENSBTAP00000003652/1-583 NSFYFIYLGT VAVTEDEDGS SAFLDPHPTL LQKGSCFGEM GSLSSTVRRA bmy_00598T0/1-557 NSFYFIYLGM VAVTEDEDGS SAFLDPHPTL LQKGSCFGEM GFLTSSVRRA ENSTTRP00000016160/1-574 NSFYFIYLGT VAVTEDEDGS SAFLDPHPTL LQKGSSFGXX XXXXXXXXXX 201 250 ENSP00000340954/1-572 TIVCMEETEF LVVDREDFFA NKLDQEVQKD AQYRFEFFRK MELFASWSDE ENSBTAP00000003652/1-583 TVVCMEETEF LVVDREDFLA NKLDQEVKKD AQLRFEFFRK MDLFHSWSDE bmy_00598T0/1-557 TVVCMEETEL LVVDREDFLA NKLDQEVKKD AQHRFEFFRK MDLFHSWSDE ENSTTRP00000016160/1-574 XXXXXXXXXX XXVDREDFLA NKLDQEVKKD AQHR-EFFRK MDLFHSWSDE 251 300 ENSP00000340954/1-572 KLWQLVAMAK IERFSYGQLI SKDFGESPFI MFISKGSCEV LRLLDLGASP ENSBTAP00000003652/1-583 TLWKLVVLGK VEKFSYGQLI SKDFIESSSI MFVCEGICEV LRLIDLESSP bmy_00598T0/1-557 KLWKLVILGK IEKFSYGQLI SKDFVESSSI VFVCKGSCEV LQLIDLATSP ENSTTRP00000016160/1-574 KLWKLVMLGK IEKFSYGQLI SKDFVESSSI VFVCKGSCEV LQLIDLATSP 301 350 ENSP00000340954/1-572 SYRRWIWQHL ELIDGRPLKT HLSEYSPMER FKEFQIKSYP LQDFSSLKLP ENSBTAP00000003652/1-583 FYHKWIWEHL QLIDDGPPNI HLKDLSPVER FKEFQIRSYP VQDFSFLKLF bmy_00598T0/1-557 FYHKWIWQHL QLIDDRPPNT HLKDLSPVER FKEFQIRSYP VQDFSFLKLL ENSTTRP00000016160/1-574 FYHKWVWQHL QLIDDRPPNT HLKDLSPVER FKEFQIKSYP VQDFSSLKLL 351 400 ENSP00000340954/1-572 HLKKAWGLQG TSFSRKIRTS GDTLPKMLGP KIQSRPAQSI KCAMINIKPG ENSBTAP00000003652/1-583 HLQKAQEQEG SSFSRKIKTS GNTLPKTFGS KIKSRCSHLI KCPMIQTKYG bmy_00598T0/1-557 HLRKAQEQQG SSFSRKIKTS GNTLPKTLGS KIKSRCPHFI ECPMIDTKYG ENSTTRP00000016160/1-574 HLRKAQEQQG SSFSRKIKTS ANTLPKTLGP KIKSRCPHFI ECPMIDTKYG 401 450 ENSP00000340954/1-572 ELPKEAAVGA YVKVHTVEQG EILA----FL PEGECDTRPL ILMSLGNELI ENSBTAP00000003652/1-583 DLPKEAAVGA YMKIHTVEQG EILGLHQILL PESQHDTRPL ILVSLGAEVI bmy_00598T0/1-557 DLPKEAAVGA YMKIHTVEQG EILGLHQILL PESQHDTRPL ILVSLGAEVI ENSTTRP00000016160/1-574 ALPKEAAVGA YVKIHTVEQG EVLGLHQILL PESQRDTRPL ILVSLGAEVI 451 500 ENSP00000340954/1-572 RIRKEIFYEL IDNDDEMIKK LLKLNIAFPS DEDMCQKFLQ QNSWNIFRKD ENSBTAP00000003652/1-583 RIRKEKFCEL LDSNT--IEK LSKFSIKYPS DEDLCQRFLK ENNWNIFRKD bmy_00598T0/1-557 RVRKEKFCEL IDSKT--IEK LSKFEI---N DEDVCQKFLE ENSWNVFRKD ENSTTRP00000016160/1-574 RVRKEKFCEL IDSKT--IEK LSKFEIKYPS DEDVCQKFLE ENSWNVFRKD 501 550 ENSP00000340954/1-572 LLQLLVEPCQ SQLFTPNRPK KREIYNPKSV VLDLCSINKT TKPRYPIFMA ENSBTAP00000003652/1-583 LVRLLVEPRW RPAFTPIQPK KKGTYNPRIV MLDLYSLDKK TKRRHPIFMA bmy_00598T0/1-557 LMRLLVEPRQ CPPFTPIQPK KKGIYGPKAV MLDLCSLEKK TKPRHPIFMA ENSTTRP00000016160/1-574 LMRLLVEPRQ CPPFTPIQPK KKGIYKPKAV MLDLCSLDKK TRPRHPIFMA 551 600 ENSP00000340954/1-572 PQKYLPPLRI VQAIKAPRYK IRELLA---- ----- ENSBTAP00000003652/1-583 PQKYLPPLRI VQTIIAPRYK IQELLPQYKN AGVLM bmy_00598T0/1-557 PQKYLPPLRI VQAIIAPRYK IQELLPQYKN AGVLV ENSTTRP00000016160/1-574 PQKYLPPLRI VETIIAPRYK IQELLPQ--- -----