KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:21:39 2014 Check: 00 .. Name: BACU002601/1-1132 Len: 1438 Check: 7116 Weight: 1.00 Name: ENSTTRP00000001627/1-677 Len: 1438 Check: 1413 Weight: 1.00 Name: ENSP00000467290/1-888 Len: 1438 Check: 9589 Weight: 1.00 Name: bmy_15820T0/1-996 Len: 1438 Check: 1173 Weight: 1.00 Name: ENSBTAP00000003619/1-784 Len: 1438 Check: 391 Weight: 1.00 // 1 50 BACU002601/1-1132 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 ---------- ---------- ---------- ---------- ---------- bmy_15820T0/1-996 MLASAESQIL EVQGHREETP LLHARPSCFL ALNPQRQAFQ GQSSHLTSTS ENSBTAP00000003619/1-784 ---------- ---------- ---------- ---------- ---------- 51 100 BACU002601/1-1132 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 ---------- ---------- ---------- ---------- ---------- bmy_15820T0/1-996 TGSGSPHPEA GAGLGDVPAA QTGKLRHGAS PEAAGVFLGP PDCTPSGRGV ENSBTAP00000003619/1-784 ---------- ---------- ---------- ---------- ---------- 101 150 BACU002601/1-1132 ---------- ------MRTP RAPPPRPALL LLLLLLGGSH GLFPEEPPPL ENSTTRP00000001627/1-677 ---------- ------MRTP RAPPPRPALL LLLLLLGGSH GLFPEEPPPL ENSP00000467290/1-888 ---------- ------MQTP RASPPRPALL LLLLLLGGAH GLFPEEPPPL bmy_15820T0/1-996 EGWVPEGVTS CRPDLAMRTP RAPPPRQALL LLLLLLGGSH GLFPEEPPPL ENSBTAP00000003619/1-784 ---------- ------MRTP RGPPSRPALL LLLLLLGGAH GLFPEEPPPL 151 200 BACU002601/1-1132 SVAPRDYLNH YPVFVGSGPG HLTPAEGTDD LNIQRVLRGL VGCRGVLELL ENSTTRP00000001627/1-677 SVAPRDYLNH YPVFVGSGP- HLTPAEG-DD L-IQR-LR-- ---------- ENSP00000467290/1-888 SVAPRDYLNH YPVFVGSGPG RLTPAEGADD LNIQRVLR-- ---------- bmy_15820T0/1-996 SVAPRDYLNH YPVFVGSGPG HLTPTEGTDD LNIQRVLR-- ---------- ENSBTAP00000003619/1-784 SVAPRDYLNH YPVFVGSGPG RLTPSEDADD LNIQRVLR-- ---------- 201 250 BACU002601/1-1132 PPREVGPWRA VGRGGTGPDS GAHRCPPVAA GGGQTVLVRA GATRLGQRGQ ENSTTRP00000001627/1-677 ---------- VNR------- ---------- ----TL--R- ---------- ENSP00000467290/1-888 ---------- VNR------- ---------- ----TLFIG- ---------- bmy_15820T0/1-996 ---------- VNR------- ---------- ----TLFIG- ---------- ENSBTAP00000003619/1-784 ---------- VNR------- ---------- ----TLFIG- ---------- 251 300 BACU002601/1-1132 CWSRDNLYRV ELEPPTSMEL RYQRKLTWRS NPSDINVCRM KGKQEGECRN ENSTTRP00000001627/1-677 --DXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000467290/1-888 --DRDNLYRV ELEPPTSTEL RYQRKLTWRS NPSDINVCRM KGKQEGECRN bmy_15820T0/1-996 --DRDNLYRV ELEPPTSMEL RYQRKLTWRS NPSDINVCRM KGKQEGECRN ENSBTAP00000003619/1-784 --GRDNLYRV ELEPPTSTEM RYQRKLTWRS NPSDINVCRM KGKQEGECRN 301 350 BACU002601/1-1132 FVKVLLLRDE STLFVCGSNA FNPVCANYSM DTLQPLGDNI SGMARCPYDP ENSTTRP00000001627/1-677 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXQPLGDNI SGMARCPYDP ENSP00000467290/1-888 FVKVLLLRDE STLFVCGSNA FNPVCANYSI DTLQPVGDNI SGMARCPYDP bmy_15820T0/1-996 FVKVLLLRDE STLFVCGSNA FNPVCANYSM DTLQPLGDNI SGMARCPYDP ENSBTAP00000003619/1-784 FVKVLLLRDE STLFVCGSNA FNPVCANYSM DTLQPLRDNI SGMARCPYDP 351 400 BACU002601/1-1132 KHANVALFSE GMLFTATVTD FLAIDTVIYR SLGDRPTLRT VKHDSKWFKE ENSTTRP00000001627/1-677 KHANVALFSE GMLFTATVTD FLAIDAVIYR SLGDRPTLRT VKHDSKWFKE ENSP00000467290/1-888 KHANVALFSD GMLFTATVTD FLAIDAVIYR SLGDRPTLRT VKHDSKWFKE bmy_15820T0/1-996 KHANVALFSE GMLFTATVTD FLAIDAVIYR SLGDRPTLRT VKHDSKWFKE ENSBTAP00000003619/1-784 KHANVALFSE GMLFTATVTD FLAIDAVIYR SLGDRPTLRT VKHDSKWFKE 401 450 BACU002601/1-1132 PYFVHVVEWG SHIYFFFREI AMEFNYLEKV VVSRVARVCK NDVGGSPRVL ENSTTRP00000001627/1-677 PYFVHVVEWG SHIYFFFREI AMEFNYLEKV VVSRVARVCK NDVGGSPRVL ENSP00000467290/1-888 PYFVHAVEWG SHVYFFFREI AMEFNYLEKV VVSRVARVCK NDVGGSPRVL bmy_15820T0/1-996 PYFVHVVEWG SHIYFFFREI AMEFNYLEKV VVSRVARVCK NDVGGSPRVL ENSBTAP00000003619/1-784 PYFVHAVEWG SHIYFFFREI AMEFNYLEKV VVSRVARVCK NDMGGSPRVL 451 500 BACU002601/1-1132 EKQWTSFLKA RLNCSVPGDS HFYFNVLRAV TGVVSLGGRP VVLAVFSTPS ENSTTRP00000001627/1-677 EKQWTSFLKA QLNCSVPGDS HFYFNVLRAV TGVVSLGARP VVLAVFSTPS ENSP00000467290/1-888 EKQWTSFLKA RLNCSVPGDS HFYFNVLQAV TGVVSLGGRP VVLAVFSTPS bmy_15820T0/1-996 EKQWTSFLKA RLNCSVPGDS HFYFNVLRAV TGVVSLGGRP VVLAVFSTPS ENSBTAP00000003619/1-784 EKQWTSFLKA RLNCSVPGDS HFYFNVLQAV TGVVSLGGRP VVLAVFSTPS 501 550 BACU002601/1-1132 NSIPGSAVCA FDMTQVAAVF EGRFREQKSP ESIWTPVPED QVPRPRPGCC ENSTTRP00000001627/1-677 NSIPGSAVCA FDMTQVAAVF EGRFREQKSP ESIWTPVPED QVPRPRPGCC ENSP00000467290/1-888 NSIPGSAVCA FDLTQVAAVF EGRFREQKSP ESIWTPVPED QVPRPRPGCC bmy_15820T0/1-996 NSIPGSAVCA FDMTQVAAVF EGRFREQKSP ESIWTPVPED QVPRPRPGCC ENSBTAP00000003619/1-784 NSIPGSAVCA FDMTQVAAVF EGRFREQKSP ESIWTPVPED QVPRPRPGCC 551 600 BACU002601/1-1132 AAPGMQYNAS SAFPDEILNF VKTHPLMDEA VPSLGHAPWI VRTLMRYQLT ENSTTRP00000001627/1-677 AAPGMQYNAS SAFPDEILNF V-THPLMDEA VPSLGHAPWI VRTLMRYQLT ENSP00000467290/1-888 AAPGMQYNAS SALPDDILNF VKTHPLMDEA VPSLGHAPWI LRTLMRHQLT bmy_15820T0/1-996 AAPGMQYNAS SAFPDEILNF VKTHPLMDEA VPSLGHAPWI VRTLMRYQLT ENSBTAP00000003619/1-784 AAPGMQYNAS SAFPDEILNF VKTHPLMDEA VPSLGHAPWI VRTLMRHQLT 601 650 BACU002601/1-1132 RVAVDVGAGP WGNQTVVFLG SEAGTVLKFL VWPNASASGT TGPSVFLEEF ENSTTRP00000001627/1-677 RVAVDVGAGP WGNQTVVFLG SEAGTVLKFL VWPNASASGT TGPSVFLEEF ENSP00000467290/1-888 RVAVDVGAGP WGNQTVVFLG SEAGTVLKFL VRPNASTSGT SGLSVFLEEF bmy_15820T0/1-996 RVAVDVGAGP WGNQTVVFLG SEAGTVLKFL VWPNASASGT TGPSVFLEEF ENSBTAP00000003619/1-784 RVAVDVGAGP WGNQTVIFLG SEAGTVLKFL VWPNASASGT TGPSVFLEEF 651 700 BACU002601/1-1132 ETYRPDRCGR SGGGEAGQRL LSLELDAASG GLLAAFPRCV VRVPVARCQQ ENSTTRP00000001627/1-677 ETYRPDRCGR SGGGETGQRL LSLELDAASG GLLAAFPRCV VRVP-ARCQQ ENSP00000467290/1-888 ETYRPDRCGR PGGGETGQRL LSLELDAASG GLLAAFPRCV VRVPVARCQQ bmy_15820T0/1-996 ETYRPDRCGR SGGGEAGQRL LSLELDAASG GLLAAFPRCV VRVPVARCQQ ENSBTAP00000003619/1-784 ETYRPDRCGR SGDGETGQRL LSLELDAASG GLLAAFPRCV VRVPVARCQQ 701 750 BACU002601/1-1132 YSGCMKHCIG SQDPYCGWAP DGSCIFLSPG TRATFEQDVS GASTSGLGDC ENSTTRP00000001627/1-677 YSGCMKNCIG SQDPYCGWAP DGSCIFLSPG TRANFEQDVS GASTSGLGDC ENSP00000467290/1-888 YSGCMKNCIG SQDPYCGWAP DGSCIFLSPG TRAAFEQDVS GASTSGLGDC bmy_15820T0/1-996 YSGCMKNCIG SQDPYCGWAP DGSCIFLSPG TRATFEQDVS GASTSGLGDC ENSBTAP00000003619/1-784 YSGCMKNCIG SQDPYCGWAP DGSCVFLSPG TRATFEQDVS GTSTSGLGDC 751 800 BACU002601/1-1132 TGLLRASLSE ERAGLVSVNL LVTSSVAAFV VGAVVSGFSV GWWGPARGRR ENSTTRP00000001627/1-677 TGLLGASLSE ERAGLVSVNL LVTSSVAAFV VGAVVSGFSV GWYVGLRERR ENSP00000467290/1-888 TGLLRASLSE DRAGLVSVNL LVTSSVAAFV VGAVVSGFSV GWFVGLRERR bmy_15820T0/1-996 TGLLRASLSE ERAGLVSVNL LVTSSVAAFV VGAVVSGFSV GWYVGLRERR ENSBTAP00000003619/1-784 TGLLRASLSE ERAGLVSVNL LVTSSVAAFV VGAVVSGFSV GWYVGLRERR 801 850 BACU002601/1-1132 AAPPQ----- --GQGGHPGA RGWRGRAERE PPGRAPGGRP RGPGRXXXXX ENSTTRP00000001627/1-677 ELARRKDKEA ILAHGGGEAV LSVSRLGERR AGG--PGGRA GGGGG--GVP ENSP00000467290/1-888 ELARRKDKEA ILAHGAGEAV LSVSRLGERR AQG--PGGRG GGGGGGAGVP bmy_15820T0/1-996 ELARRKDKEA ILAHGGGEAV LSVSRLGERR AGG--PGGRA VGGGG-PGVP ENSBTAP00000003619/1-784 ELARRKDKEA ILAHGGGEAV LSVSRLGERR AGG--PGGRA GGGGGGPGGP 851 900 BACU002601/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000001627/1-677 PEALLAPLMQ N--------- ---------- ---------- ---------- ENSP00000467290/1-888 PEALLAPLMQ N--------- ---------- ---------- ---------- bmy_15820T0/1-996 PEALLAPLMQ N--------- ---------- ---------- ---------- ENSBTAP00000003619/1-784 PEALLAPLMQ N--------- ---------- ---------- ---------- 901 950 BACU002601/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 ---------- ---------- ---------- ---------- ---------- bmy_15820T0/1-996 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003619/1-784 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU002601/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 ---------- ---------- ---------- ---------- ---------- bmy_15820T0/1-996 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003619/1-784 ---------- ---------- ---------- ---------- ---------- 1001 1050 BACU002601/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 ---------- ---------- ---------- ---------- ---------- bmy_15820T0/1-996 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003619/1-784 ---------- ---------- ---------- ---------- ---------- 1051 1100 BACU002601/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 ---------- ---------- ---------- ---------- ---------- bmy_15820T0/1-996 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003619/1-784 ---------- ---------- ---------- ---------- ---------- 1101 1150 BACU002601/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 ---------- ---------- ---------- ---------- ---------- bmy_15820T0/1-996 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003619/1-784 ---------- ---------- ---------- ---------- ---------- 1151 1200 BACU002601/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 ---------- ---------- ---------- ---------- ---------- bmy_15820T0/1-996 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000003619/1-784 ---------- ---------- ---------- ---------- ---------- 1201 1250 BACU002601/1-1132 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXRGGPS ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 ---------- ---------- ---------- -------GWA KATLLQGGPH bmy_15820T0/1-996 ---------- ---------- ---------- -------GWA KATLLQGGPH ENSBTAP00000003619/1-784 ---------- ---------- ---------- -------GWT KATLLQGGPH 1251 1300 BACU002601/1-1132 GLGVG----- ---------- ---------- ---------- ---------- ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 DLDSGLLPTP EQTPLPQKRL PTPHPHPHAL GPRAWDHGHP LLPASASSSL bmy_15820T0/1-996 DLDSGLLPTP EQTPLPQKRL PT--PHPHAL GPRAWEHGHA LLTASVSSSL ENSBTAP00000003619/1-784 DLDSGLLPTP EQTPLPQKRL PT--PHPHTL GPRAWEHGPA LLTASASSSL 1301 1350 BACU002601/1-1132 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 LLLAPARAPE QPPAPGEPTP DGRLYAARPG RASHGDFPLT PHASPDRRRV bmy_15820T0/1-996 LLLAPARAPE PPPAPGEPAP DARLFVARPG RASHGDFPLT PHASPDRRRV ENSBTAP00000003619/1-784 LLLAPGRAPE PPPAPREPGA RAR------- ----GQL--- ---------- 1351 1400 BACU002601/1-1132 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001627/1-677 ---------- ---------- ---------- ---------- ---------- ENSP00000467290/1-888 VSAPTGPLDP ASAADGLPRP WSPPPTGSLR RPLGPHAPPA ATLRRTHTFN bmy_15820T0/1-996 VSAPTGPSDP SSAADGLPRP WSPPPTGSLR RP-GAHAPPA AALRRTHTIN ENSBTAP00000003619/1-784 ---PSGCSDP ---------- ---------- ---------- ---------- 1401 1450 BACU002601/1-1132 ---------- ---------- ---------- -------- ENSTTRP00000001627/1-677 ---------- ---------- ---------- -------- ENSP00000467290/1-888 SGEARPGDRH RGCHARPGTD LAHLLPYGGA DRTAPPVP bmy_15820T0/1-996 SGEARP---- RGRHARPGTD LAHLLSYGGP DRTAPPVP ENSBTAP00000003619/1-784 ---------- -----QPG-- ---------- --------