KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:20:28 2014 Check: 00 .. Name: bmy_04133T0/1-740 Len: 811 Check: 3000 Weight: 1.00 Name: ENSBTAP00000003274/1-486 Len: 811 Check: 3544 Weight: 1.00 Name: ENSP00000435926/1-512 Len: 811 Check: 8481 Weight: 1.00 Name: BACU008962/1-514 Len: 811 Check: 8675 Weight: 1.00 Name: ENSTTRP00000013426/1-486 Len: 811 Check: 3553 Weight: 1.00 // 1 50 bmy_04133T0/1-740 MLFMWIANYR GMSTDMLKSL EKFKRISVLK IQHLEEYSGR VQQLAYRGTF ENSBTAP00000003274/1-486 ---------- ---------- ---------- ---------- ---------- ENSP00000435926/1-512 ---------- ---------- ---------- ---------- ---------- BACU008962/1-514 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013426/1-486 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_04133T0/1-740 ASLKVRNLKV RIRLFPEVQF VHLNCFAMKS VLSHRTFKLI VPCGMLRKYG ENSBTAP00000003274/1-486 ---------- ---------- ---------- ---------- ---------- ENSP00000435926/1-512 ---------- ---------- ---------- ---------- ---------- BACU008962/1-514 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013426/1-486 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_04133T0/1-740 SKYEEECAQL IFVMKLFMSI RSNTLADFFT ELIWVIDCDA LKSCLIMSRF ENSBTAP00000003274/1-486 ---------- ---------- ---------- ---------- ---------- ENSP00000435926/1-512 ---------- ---------- ---------- ---------- ---------- BACU008962/1-514 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013426/1-486 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_04133T0/1-740 IYTEVSFGFK TNIILVHFLD VIVAQYASHL MSLHFRESIL LGCNLGEDAK ENSBTAP00000003274/1-486 ---------- ---------- ---------- ---------- ---------- ENSP00000435926/1-512 ---------- ---------- ---------- ---------- ---------- BACU008962/1-514 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013426/1-486 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_04133T0/1-740 LSEDNSPERE VESYSSLYCE LSLSEVKSLR KVKLLKKQCS LVVSGFGGPQ ENSBTAP00000003274/1-486 ---------- ---------- ---------- ---------- ---------- ENSP00000435926/1-512 ---------- ---------- ---------- ---------- ---------- BACU008962/1-514 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013426/1-486 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_04133T0/1-740 KLILREEFGR CETSLCFFCS EAKAVCICGS DKCSKLITLA SEGESEVMAA ENSBTAP00000003274/1-486 ---------- ---------- ---------- ---------- ---------- ENSP00000435926/1-512 ---------- ---------- ---------- ---------- -------MAA BACU008962/1-514 ---------- ---------- ---------- ---------- -------MAA ENSTTRP00000013426/1-486 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_04133T0/1-740 FKLDFLPEMM VDHCSLNSSP VSKKMNGTLD HPDQPDLDAI KMFVGQVPRT ENSBTAP00000003274/1-486 ---------- ---------- ----MNGTLD HPDQPDLDAI KMFVGQVPRT ENSP00000435926/1-512 FKLDFLPEMM VDHCSLNSSP VSKKMNGTLD HPDQPDLDAI KMFVGQVPRT BACU008962/1-514 FKLDFLPEMM VDHCSLNSSP VSKKMNGTLD HPDQPDLDAI KMFVGQVPRT ENSTTRP00000013426/1-486 ---------- ---------- ----MNGTLD HPDQPDLDAI KMFVGQVPRT 351 400 bmy_04133T0/1-740 WSEKDLRELF EQYGAVYEIN VLRDRSQNPP QSKGCCFVTF YTRKAALEAQ ENSBTAP00000003274/1-486 WSEKDLRELF EQYGAVYEIN VLRDRSQNPP QSKGCCFVTF YTRKAALEAQ ENSP00000435926/1-512 WSEKDLRELF EQYGAVYEIN VLRDRSQNPP QSKGCCFVTF YTRKAALEAQ BACU008962/1-514 WSEKDLRELF EQYGAVYEIN VLRDRSQNPP QSKGCCFVTF YTRKAALEAQ ENSTTRP00000013426/1-486 WSEKDLRELF EQYGAVYEIN VLRDRSQNPP QSKGCCFVTF YTRKAALEAQ 401 450 bmy_04133T0/1-740 NALHNMKVLP GMHHPIQMKP ADSEKNNAVE DRKLFIGMIS KKCTENDIRV ENSBTAP00000003274/1-486 NALHNMKVLP GMHHPIQMKP ADSEKNNAVE DRKLFIGMIS KKCTENDIRV ENSP00000435926/1-512 NALHNMKVLP GMHHPIQMKP ADSEKNN-VE DRKLFIGMIS KKCTENDIRV BACU008962/1-514 NALHNMKVLP GMHHPIQMKP ADSEKNNAVE DRKLFIGMIS KKCTENDIRV ENSTTRP00000013426/1-486 NALHNMKVLP GMHHPIQMKP ADSEKNNAVE DRKLFIGMIS KKCTENDIRV 451 500 bmy_04133T0/1-740 MFSSFGQIEE CRILRGPDGL SRVLG----- ---------- --------EG ENSBTAP00000003274/1-486 MFSSFGQIEE CRILRGPDGL SRGCAFVTFT TRAMAQTAIK AMHQAQTMEG ENSP00000435926/1-512 MFSSFGQIEE CRILRGPDGL SRGCAFVTFT TRAMAQTAIK AMHQAQTMEG BACU008962/1-514 MFSSFGQIEE CRILRGPDGL SRGCAFVTFT TRAMAQTAIK AMHQAQTMEG ENSTTRP00000013426/1-486 MFSSFGQIEE CRILRGPDGL SRGCAFVTFT TRAMAQTAIK AMHQAQTMEG 501 550 bmy_04133T0/1-740 CSSPMVVKFA DTQKDKEQKR MAQQLQQQMQ QISAASVWGN LAGLNTLGPQ ENSBTAP00000003274/1-486 CSSPMVVKFA DTQKDKEQKR MAQQLQQQMQ QISAASVWGN LAGLNTLGPQ ENSP00000435926/1-512 CSSPMVVKFA DTQKDKEQKR MAQQLQQQMQ QISAASVWGN LAGLNTLGPQ BACU008962/1-514 CSSPMVVKFA DTQKDKEQKR MAQQLQQQMQ QISAASVWGN LAGLNTLGPQ ENSTTRP00000013426/1-486 CSSPMVVKFA DTQKDKEQKR MAQQLQQQMQ QISAASVWGN LAGLNTLGPQ 551 600 bmy_04133T0/1-740 YLALYLQLLQ QTASSGNLNT LSSLHPMGGL NAMQLQNLAA LAAAASAAQN ENSBTAP00000003274/1-486 YLALYLQLLQ QTASSGNLNT LSSLHPMGGL NAVQLQNLAA LAAAASAAQS ENSP00000435926/1-512 YLALYLQLLQ QTASSGNLNT LSSLHPMGGL NAMQLQNLAA LAAAASAAQN BACU008962/1-514 YLALYLQLLQ QTASSGNLNT LSSLHPMGGL NAMQLQNLAA LAAAASAAQN ENSTTRP00000013426/1-486 YLALYLQLLQ QTASSGNLNT LSSLHPMGGL NAMQLQNLAA LAAAASAAQN 601 650 bmy_04133T0/1-740 TPSGTNALTT SSSPLSVLTS SAGSSPSSSS SSSVNPIASL GALQTLAGAT ENSBTAP00000003274/1-486 TPSGTSALTT SSSPLSVLTS S-GSSPSSSS SSSVNPIASL GALQTLAGAT ENSP00000435926/1-512 TPSGTNALTT SSSPLSVLTS S-GSSPSSSS SNSVNPIASL GALQTLAGAT BACU008962/1-514 TPSGTNALTT SSSPLSVLTS SAGSSPSSSS SSSVNPIASL GALQTLAGAT ENSTTRP00000013426/1-486 TPSGTNALTT SSSPLSVLTS S-GSSPSSSS SSSVNPIASL GALQTLAGAT 651 700 bmy_04133T0/1-740 AGLNVSSLAG MAALNGGLGS SGLSNGTGST MEALTQAYSG IQQYAAAALP ENSBTAP00000003274/1-486 AGLNVSSLAG MAALNGGLGS SGLSNGTGST MEALTQAYSG IQQYAAAALP ENSP00000435926/1-512 AGLNVGSLAG MAALNGGLGS SGLSNGTGST MEALTQAYSG IQQYAAAALP BACU008962/1-514 AGLNVSSLAG MAALNGGLGS SGLSNGTGST MEALTQAYSG IQQYAAAALP ENSTTRP00000013426/1-486 AGLNVSSLAG MAALNGGLGS SGLSNGTGST MEALTQAYSG IQQYAAAALP 701 750 bmy_04133T0/1-740 TLYNQNLLTQ QSIGAAGSQK EG-------- ---------- ---------- ENSBTAP00000003274/1-486 TLYNQNLLAQ QSIGAAGSQK EGPEGANLFI YHLPQEFGDQ DLLQMFMPFG ENSP00000435926/1-512 TLYNQNLLTQ QSIGAAGSQK EGPEGANLFI YHLPQEFGDQ DLLQMFMPFG BACU008962/1-514 TLYNQNLLTQ QSIGAAGSQK EGPEGANLFI YHLPQEFGDQ DLLQMFMPFG ENSTTRP00000013426/1-486 TLYNQNLLTQ QSIGAAGSQK EGPEGANLFI YHLPQEFGDQ DLLQMFMPFG 751 800 bmy_04133T0/1-740 ---------- ---------- FVSYDNPVSA QAAIQSMNGF QIGMKRLKVQ ENSBTAP00000003274/1-486 NVVSAKVFID KQTNLSKCFG FVSYDNPVSA QAAIQSMNGF QIGMKRLKVQ ENSP00000435926/1-512 NVVSAKVFID KQTNLSKCFG FVSYDNPVSA QAAIQSMNGF QIGMKRLKVQ BACU008962/1-514 NVVSAKVFID KQTNLSKCFG FVSYDNPVSA QAAIQSMNGF QIGMKRLKVQ ENSTTRP00000013426/1-486 NVVSAKVFID KQTNLSKCFG FVSYDNPVSA QAAIQSMNGF QIGMKRLKVQ 801 850 bmy_04133T0/1-740 LKRSKNDSKP Y ENSBTAP00000003274/1-486 LKRSKNDSKP Y ENSP00000435926/1-512 LKRSKNDSKP Y BACU008962/1-514 LKRSKNDSKP Y ENSTTRP00000013426/1-486 LKRSKNDSKP Y