KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:19:29 2014 Check: 00 .. Name: ENSP00000250351/1-254 Len: 294 Check: 3937 Weight: 1.00 Name: ENSBTAP00000002923/1-248 Len: 294 Check: 4941 Weight: 1.00 Name: bmy_14024T0/1-221 Len: 294 Check: 521 Weight: 1.00 Name: ENSTTRP00000000841/1-203 Len: 294 Check: 4967 Weight: 1.00 // 1 50 ENSP00000250351/1-254 MGLSIFLLLC VLGLSQAATP KIFNGTECGR NSQPWQVGLF EGTSLRCGGV ENSBTAP00000002923/1-248 MRASIFLLLC FVGFSHEAKE KITNGTECIP HSQPWQVGLF EGTRLRCGGV bmy_14024T0/1-221 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000841/1-203 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000250351/1-254 LIDHRWVLTA AHCSGSRYWV RLGEHSLSQL DWTEQIRHSG FSVTHPGYLG ENSBTAP00000002923/1-248 LIDRRWVLTA AHCSGSRYWV RLGEHSLSKL DWTEQIRRSG LSVTHPSYRG bmy_14024T0/1-221 ---------- -------YWL SLGEHSLSQL DWTEKIRHSG LSVTHPGYQA ENSTTRP00000000841/1-203 LIDRRWVLTA ARCS-SRHWL SLGEHSLSQM DWTEQIRHSG LSVTHPGYQA 101 150 ENSP00000250351/1-254 ASTSHEHDLR LLRLRLPVRV TSSVQPLPLP NDCATAGTEC HVSGWGITNH ENSBTAP00000002923/1-248 NLGNHDNDLR LLRLGTPVRL TTSVQPLPLP TTCATAGTEC HISGWGTTNH bmy_14024T0/1-221 ALQNHDNDLR LLQLGIPVLL THSIQPLPLP ATCAVAGTKC RXSGWGTNNH ENSTTRP00000000841/1-203 ALQNQDNDLR LLQLGIPVLL THSIQPLPLP MTCAVAGTRC HISGWGTTNH 151 200 ENSP00000250351/1-254 PRNPFPDLLQ CLNLSIVSHA TCHGVYPGRI TSNMVCAGGV PGQDAC---- ENSBTAP00000002923/1-248 PWSPFPDRLQ CLSLSIVSNA TCRAVFPGRI TDNMVCAGGK AGEDAC---- bmy_14024T0/1-221 PGNQLSDRLQ CLNLSMVSNA TCRAGFPGRI TDNMVCAGGI AGEDACQAWS ENSTTRP00000000841/1-203 TRNQLSDRLQ CLNLSIVSNA TCRAAFPGRI TDNMVCAGGI AGKDAC---- 201 250 ENSP00000250351/1-254 ---------- ---------- ---------- ------QGDS GGPLVCGGVL ENSBTAP00000002923/1-248 ---------- ---------- ---------- ------QGDS GGPLVCGGVL bmy_14024T0/1-221 HGPQGPGMAE GEGGCGEENW KRISPIFRPC SFSSAFQGDS GGPLVCRGVL ENSTTRP00000000841/1-203 ---------- ---------- ---------- ------QSDS GGPLVCGGVL 251 300 ENSP00000250351/1-254 QGLVSWGSVG PCGQDGIPGV YTYICNSTLV GLGTSWNFNS CQPF ENSBTAP00000002923/1-248 QGLVSWGSVG PCGQEGIPGV YTNVCKY--- ---VDWIQTV MRSN bmy_14024T0/1-221 QGLVSWGSVE PCGQEGIPGV YTNICKY--- ---VDWIRMV MRNN ENSTTRP00000000841/1-203 QGLVSWGSVE PCGQEGIPGV YTNICNSTLL GLGTSWNSNS SQPF