KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:18:21 2014 Check: 00 .. Name: ENSTTRP00000014835/1-461 Len: 475 Check: 7901 Weight: 1.00 Name: bmy_13847T0/1-363 Len: 475 Check: 3493 Weight: 1.00 Name: ENSP00000333934/1-463 Len: 475 Check: 5485 Weight: 1.00 Name: BACU014281/1-436 Len: 475 Check: 8993 Weight: 1.00 Name: ENSBTAP00000002544/1-460 Len: 475 Check: 3599 Weight: 1.00 // 1 50 ENSTTRP00000014835/1-461 MALPGPVNRY LLLMAQEHXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSPF bmy_13847T0/1-363 MALPGAVNRY LLLMAQEHLE FRLP------ ---------- -------SPF ENSP00000333934/1-463 MALSCTLNRY LLLMAQEHLE FRLPEIKSLL LLFGGQFASS QETYG-KSPF BACU014281/1-436 ---------- ---------- ----EIKSLL SLFGGQFTSS QETYG-KSPF ENSBTAP00000002544/1-460 MAPPGILNRY LLLMAQEHLE FRLPEIKSLL SLFGGQFISS QETYG-KSPF 51 100 ENSTTRP00000014835/1-461 WILSIPSEDI ARNLMKRTVC AKSIFELWGH GKSPEELYSS LRNYPVEKMV bmy_13847T0/1-363 WILSIPSEDI ARNLMKRTVC AKSIFELWGH GKSPEELYSS LKNYPVEKMV ENSP00000333934/1-463 WILSIPSEDI ARNLMKRTVC AKSIFELWGH GQSPEELYSS LKNYPVEKMV BACU014281/1-436 WILSIPSEDI ARNLMKRTVC AKSIFELWGH GKSPEELYSS LKNYPVDKMV ENSBTAP00000002544/1-460 WILSIPSEDI ARNLMKRTVC AKSIFELWGH GKCPEELYSS LKNYPVEKMV 101 150 ENSTTRP00000014835/1-461 PFLHSDSTYK IKIHTFNKTL TQEEKIKRID ALEFLPFEGK VNLKKPQHIF bmy_13847T0/1-363 PFLHSDSTYK IKIHTFNKTL TQEEKVKRID ---------- ---------- ENSP00000333934/1-463 PFLHSDSTYK IKIHTFNKTL TQEEKIKRID ALEFLPFEGK VNLKKPQHVF BACU014281/1-436 PFLHSDSTYK IKIHTFNKTL TQEEKVKRID ALEFLPFEGK VNLKKPQHIF ENSBTAP00000002544/1-460 PFLHSDSTYK IKIHTFNKTL TQEEKVKRID ALEFLPFEGK VNLKKPQHVF 151 200 ENSTTRP00000014835/1-461 SILEDYGLDP NCIPENPHNI YFGRWIADGQ RELIESYSVK KRHFIGNTSM bmy_13847T0/1-363 ---------- ---------- -----IADGQ RELIESYSVK KRHFIGNTSM ENSP00000333934/1-463 SVLEDYGLDP NCIPENPHNI YFGRWIADGQ RELIESYSVK KRHFIGNTSM BACU014281/1-436 SILEDYGLDP NCIPENPHNI YFGRWIADGQ RELIESYSVK KRHFIGNTSM ENSBTAP00000002544/1-460 SILEDYGLDP NHIPENPHNI YFGRWIADGQ RELIESYSVK KRHFIGNTSM 201 250 ENSTTRP00000014835/1-461 DAGLSFIMAN HGKVKENDIV FDPFVGTGGL LIASAHFGAY VYGTDIDYNT bmy_13847T0/1-363 DAGLSFIMAN HGKVKENDIV FDPFVGTGGL LIASAHFGAY VYGTDIDYNT ENSP00000333934/1-463 DAGLSFIMAN HGKVKENDIV FDPFVGTGGL LIACAHFGAY VYGTDIDYNT BACU014281/1-436 DAGLSFIMAN HGKVKENDIV FDPFVGTGGL LIASAHFGAY VYGTDIDYNT ENSBTAP00000002544/1-460 DAGLSFIMAN HGKVKKNDIV FDPFVGTGGL LIASAHFGAY VYGTDIDYNT 251 300 ENSTTRP00000014835/1-461 VPGQGKASRK NQKWRGPDEN IRANLRQYGL EKYYLDVLVS DASKPSWRKG bmy_13847T0/1-363 VHGLGKASRK NQKWRGPDEN IRANLRQYGL EKYYLDVLVS DASKPSWRKG ENSP00000333934/1-463 VHGLGKATRK NQKWRGPDEN IRANLRQYGL EKYYLDVLVS DASKPSWRKG BACU014281/1-436 VHGLGKASRK NQKWRGPDEN IRANLRQYGL EKYYLDVLVS DASKPSWRKG ENSBTAP00000002544/1-460 VHGLGKASRK NQKWRGPDEN IRANLRQYGL EKYYLDVLVS DASKPSWRKG 301 350 ENSTTRP00000014835/1-461 TYFDAIITDP PYGIRESTRR TGSQKEIPKG I---EKCPES HVPVSLSYHL bmy_13847T0/1-363 TYFDAVITDR KFIFIQN--- ---------- -------PES HVPVSLSYHL ENSP00000333934/1-463 TYFDAIITDP PYGIRESTRR TGSQKEIPKG IEKWEKCPES HVPVSLSYHL BACU014281/1-436 TYFDAVITDP PYGIRESTRR TGSQKEIPKG L---EKCPES HVPVSLSYHL ENSBTAP00000002544/1-460 TYFDAIITDP PYGIRESTRR TGSQKEIPKG I---EKCPES HVPVSLSYHL 351 400 ENSTTRP00000014835/1-461 SDMFFDLLNF AAETLVLGGR LVYXXXXXXX X--------- --YTEEMVPW bmy_13847T0/1-363 SDMFFDLLNF AAETLVLGGR LVYWLPVYTP EYIVSGLYGQ LAYTEEMVPW ENSP00000333934/1-463 SDMFLDLLNF AAETLVLGGR LVYWLPVYTP E--------- --YTEEMVPW BACU014281/1-436 SDMFFDLLNF AAETLVLGGR LVYWLPVYTP E--------- --YTEEMVPW ENSBTAP00000002544/1-460 SDMFFDLLNF SAETLVLGGR LVYWLPVYTP E--------- --YTEEMVPW 401 450 ENSTTRP00000014835/1-461 HPCLKLISNC EQKLSGRTSR RLITMEKVKG FENRDQYSHL LSDHFLPYQG bmy_13847T0/1-363 HPCLKLISNC EQKLSSHTSR RLITMEKVKE FEVN--YPSI ----FQIKSG ENSP00000333934/1-463 HPCLELVSNC EQKLSSHTSR RLITMEKVKK FENRDQYSHL LSDHFLPYQG BACU014281/1-436 HPCLKLISNC EQKLSSHTSR RLITMEKVKE FENRDQYSHL LSDHFLPYQG ENSBTAP00000002544/1-460 HPCLKLISNC EQKLSSHTSR RLITMEKVKE FENRDQYSHL LSDHFLLYQG 451 500 ENSTTRP00000014835/1-461 HNSFREKYFS GVTKRIAKEE KSSQE bmy_13847T0/1-363 R--IRSRFF- ---------- ----- ENSP00000333934/1-463 HNSFREKYFS GVTKRIAKEE KSTQE BACU014281/1-436 HNSFREKYFS GVTKRIAKEE KSNQE ENSBTAP00000002544/1-460 HNSFREKYFS GVTKRIAKEE KSSQE