KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:17:19 2014 Check: 00 .. Name: bmy_07646T0/1-442 Len: 772 Check: 4184 Weight: 1.00 Name: BACU016875/1-539 Len: 772 Check: 4003 Weight: 1.00 Name: ENSTTRP00000004382/1-635 Len: 772 Check: 7527 Weight: 1.00 Name: ENSP00000202625/1-706 Len: 772 Check: 1029 Weight: 1.00 Name: ENSBTAP00000002338/1-710 Len: 772 Check: 4130 Weight: 1.00 // 1 50 bmy_07646T0/1-442 ---------- ---------- ---------- ---------- -------LSF BACU016875/1-539 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004382/1-635 ---------- ---------- ---------- ---------- ---------- ENSP00000202625/1-706 ----MAGIRV TKVDWQRSRN GAAHHTQEYP CPELVVRRGQ SFSLTLELSR ENSBTAP00000002338/1-710 LCSPCPGLRV TEVDWQRLRN GTAHHTQEYP GSNLVVRRGQ RFTFTLELNR 51 100 bmy_07646T0/1-442 LGVAGSPDSL SSLPGPQASE AIRTKAVFQT PELEESNAWM AVXEAPMENT BACU016875/1-539 ---------- -----PQASE ALRTKAVLQT PELEESNAWM AVKEAPMENT ENSTTRP00000004382/1-635 ---------- -----PQASE ALRTKAVFQT SELEESNAWM AVKEAHMENT ENSP00000202625/1-706 ALDCEEILIF TMETGPRASE ALHTKAVFQT SELERGEGWT AAREAQMEKT ENSBTAP00000002338/1-710 PLESEETLIF TVETGPQASE ALHTKAVFQT SELERGDTWM AVKEAQTENT 101 150 bmy_07646T0/1-442 MTISLTNPPD AVIGCYQLST KVSSCRKHSN RNLGEF---- ---------- BACU016875/1-539 MTISLTNPPD AVIGCYQLST KVSSCRKHSN RNLGEPVRPE SLPTPGPNIA ENSTTRP00000004382/1-635 MTISLTNPPD AVIACYQLST KVSSRCKHSN RKLGEFVLLF NPWCPEDDV- ENSP00000202625/1-706 LTVSLASPPS AVIGRYLLSI RLSSHRKHSN RRLGEFVLLF NPWCAEDDV- ENSBTAP00000002338/1-710 TTFSLASPPN AVIGRYQLSA RVSSRRKHSD RKLGEFVLLF NPWCPEDDV- 151 200 bmy_07646T0/1-442 ---------- RKRDRSTYVL NDSRIIFRGV EKHIRAQGWN FGQFEEDILN BACU016875/1-539 FQRMMCFWPQ RKRDRRTYVL NDSRIIFRGV EKHIRAQAWN FGQFEEDILN ENSTTRP00000004382/1-635 -------FLA TEEERQEYML NDSGIIFRGV EKHI-AQGWN FRKFEEDILD ENSP00000202625/1-706 -------FLA SEEERQEYVL SDSGIIFRGV EKHIRAQGWN YGQFEEDILN ENSBTAP00000002338/1-710 -------FLD SEEERQEYVL NDSGIIFRGV EKRIRAQGWN FGQFEEDILN 201 250 bmy_07646T0/1-442 ICFCILDRSP SHQDDPA-TE VSHCHDPIYV TGAISAMVNS NDDQGVIQGQ BACU016875/1-539 ICFCILDRSP SHQDDPA-TE VSHRHDPIYV TGAISALVNS NNDQGVVQGQ ENSTTRP00000004382/1-635 ICFCILDRSP SHQDDPATTK ASHHYDPIYV TGAISAMVNS NNDQGMVQGQ ENSP00000202625/1-706 ICLSILDRSP GHQNNPA-TD VSCRHNPIYV TRVISAMVNS NNDRGVVQGQ ENSBTAP00000002338/1-710 ICLSILDRTP SYQDDPA-TD VSHRHDPVYI TRAVSAMVNS NNDRGVVQGQ 251 300 bmy_07646T0/1-442 CQGKYGGSTS SLALAWRHGH SAQVVQGQVQ ASQIRPVLGL RWSHVYRVET BACU016875/1-539 CQGKYSGSTS SLALAWRRGH SAQVVQGQVQ ASQIRPVLGL RWSHVY---- ENSTTRP00000004382/1-635 WQGKYGGSTS P--LHWR--G SVAILHKSFK G-RFKPV--- RYGQCW---- ENSP00000202625/1-706 WQGKYGGGTS P--LHWR--G SVAILQKWLK G-RYKPV--- KYGQCW---- ENSBTAP00000002338/1-710 WQGKYGGGTS P--LHWR--G SVAILHKWFK G-RFKPV--- KYGQCW---- 301 350 bmy_07646T0/1-442 RVGPGKDREG AVARPEAGSL LGEATPPLPE SGVPTCPEVL QASCSSLLGC BACU016875/1-539 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004382/1-635 ---------- ---------- ---------- --------VF AGVMCTVLGC ENSP00000202625/1-706 ---------- ---------- ---------- --------VF AGVLCTVLRC ENSBTAP00000002338/1-710 ---------- ---------- ---------- --------VF AGVMCTVLRC 351 400 bmy_07646T0/1-442 LGIATRVVSK FNLAHDTGRN LSVDKYIDSF KRTLEDLMED SMWNFHVWNE BACU016875/1-539 ---------- --------RN LSVDKYMDSF GRTLEDLMED SMWNFHVWNE ENSTTRP00000004382/1-635 LGISTRIVSK FNLAHDTGRN LSVDKYMDSF GWTLEDLMED SMWNFHVWNE ENSP00000202625/1-706 LGIATRVVSN FNSAHDTDQN LSVDKYVDSF GRTLEDLTED SMWNFHVWNE ENSBTAP00000002338/1-710 LGIATRVVSN FNSAHDTDRN LSVDKYVDSF GRTLEDLTED SMWNFHVWNE 401 450 bmy_07646T0/1-442 SWFVRQDLGP SYNGWQVLDA TPREESESVF QGGPASVTAI CEGDVHRAHD BACU016875/1-539 SWFVRQDLGP SYNGWQVLDA TPGEESESVF QCGPASVTAI REGDVHQAHD ENSTTRP00000004382/1-635 SWFVRQDLGP AYNGWQVLDP TPREESESVF QCGPASVTAI RKGDAHLIHD ENSP00000202625/1-706 SWFARQDLGP SYNGWQVLDA TPQEESEGVF RCGPASVTAI REGDVHLAHD ENSBTAP00000002338/1-710 SWFARRDLGP SYNGWQVLDA TPQEESEGVF RCGPASVTAI REGDVHLAHD 451 500 bmy_07646T0/1-442 SPSVFAEVNA DFITWLWNED EAGSVCPQTL STKKIGRCLS TKAVGSDSRV BACU016875/1-539 SPSVFAEVNA DYITWLWNED EAGSVCPQTL STKKIGRCLS TKAVGSDSRV ENSTTRP00000004382/1-635 SPSVFAEVNV NYITWXXXXX XXXXXXXX-- XXXXXXXXXX XXXXXXXXXX ENSP00000202625/1-706 GPFVFAEVNA DYITWLWHED ESRERVYS-- NTKKIGRCIS TKAVGSDSRV ENSBTAP00000002338/1-710 GPFVFAEVNA DYITWLWNED ESRERVYS-- DTKKIGRCIS TKAVGSDSRV 501 550 bmy_07646T0/1-442 DITSLYKYLE GK-------- ---------- ---------- ---------- BACU016875/1-539 DITSLYKHPE GSQKERQVYS KTMKKQLRVE TSGRRAQVHS VGSHDLWRDD ENSTTRP00000004382/1-635 XXXXXXXXXX XSQKER-MYS KTMKKLLRVE ASGRRAQVHS VGSHGLWHED ENSP00000202625/1-706 DITDLYKYPE GSRKERQVYS KAVNRLFGVE ASGRRIWIRR AGGRCLWRDD ENSBTAP00000002338/1-710 DITSLYKYPE GSRKERQVYS KAVKKLFSVE ASGRRARVRR GGGRGLWHDD 551 600 bmy_07646T0/1-442 ---------- ---------- ---------- ---------- ---------- BACU016875/1-539 LLEPAPKPSI TGKSKVLEPP MLGHDLRLLL CLANLTSRVQ RVQVNMSSAT ENSTTRP00000004382/1-635 LLEPANKPSI TGKFKVLEPP VLGHDLRLVL CLANLTSWVQ WVQV-----T ENSP00000202625/1-706 LLEPATKPSI AGKFKVLEPP MLGHDLRLAL CLANLTSRAQ RVRVNLSGAT ENSBTAP00000002338/1-710 LLEPATKPSI TGKFKVLEPP VLGHDLKLAL CLTSLTSRAQ RVQVNLSGAT 601 650 bmy_07646T0/1-442 ---------- ---------- ---------- ---------- ---------- BACU016875/1-539 ILYTRRPVAE ILHESHAVKL GPEEDKN--- ---------- ---------- ENSTTRP00000004382/1-635 IFYTHKPVAE ILHESHAVKL GPEEEKKIPI AISYSQYKED LTEDKKMLLA ENSP00000202625/1-706 ILYTRKPVAE ILHESHAVRL GPQEEKRIPI TISYSKYKED LTEDKKILLA ENSBTAP00000002338/1-710 ILYTRRPVAE ILHESHTVKL GPEEEKKIPI AISYSQYKED LTEDKKILLA 651 700 bmy_07646T0/1-442 ---------- ---------- ---------- ---GV----- ---------- BACU016875/1-539 ----ATAGWD LVGPAPF--- ---------P GGLGLGVDFP ASYIHSQEKK ENSTTRP00000004382/1-635 AMYLVTKGEK LLV-KDITLE DFIIIKVLGP AAVGV----E VMVVNPLSER ENSP00000202625/1-706 AMCLVTKGEK LLVEKDITLE DFITIKVLGP AMVGVAVTVE VTVVNPLIER ENSBTAP00000002338/1-710 AMCLVTKGEK LLVEKDITLE DFITIKVLGP AVVGVAVAVE VMVLNPLSER 701 750 bmy_07646T0/1-442 ---------- ---------- ---------- ---------- ---------- BACU016875/1-539 GYFCAFADEK TEVQRG---- ---------- ---------- ---------- ENSTTRP00000004382/1-635 VQDCMLMVEG SGLLQGQLSI DVPSLQPQER ASVQFNIIPS KSGPRQLQVD ENSP00000202625/1-706 VKDCALMVEG SGLLQEQLSI DVPTLEPQER ASVQFDITPS KSGPRQLQVD ENSBTAP00000002338/1-710 VKDCSLMVEG SGLLQGQLSI DVPSLDPQEK ASVQFKITPF KSGPRQLQVD 751 800 bmy_07646T0/1-442 ---------- ---------- -- BACU016875/1-539 ---------- ---------- -- ENSTTRP00000004382/1-635 LVSSHFPDIK VFVIIHVATA KL ENSP00000202625/1-706 LVSPHFPDIK GFVIVHVATA K- ENSBTAP00000002338/1-710 FVSPHFPDIK GFVIIHVATA K-