KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:16:34 2014 Check: 00 .. Name: ENSP00000393963/1-673 Len: 1246 Check: 9421 Weight: 1.00 Name: ENSTTRP00000006529/1-670 Len: 1246 Check: 6459 Weight: 1.00 Name: ENSBTAP00000002136/1-670 Len: 1246 Check: 3637 Weight: 1.00 Name: bmy_14336T0/1-674 Len: 1246 Check: 146 Weight: 1.00 Name: BACU012222/1-1193 Len: 1246 Check: 4749 Weight: 1.00 // 1 50 ENSP00000393963/1-673 ---------- ---------- ---------- ---------- MDP------- ENSTTRP00000006529/1-670 ---------- ---------- ---------- ---------- MEP------- ENSBTAP00000002136/1-670 ---------- ---------- ---------- ---------- MEP------- bmy_14336T0/1-674 ---------- ---------- ---------- ---------- MEP------- BACU012222/1-1193 MLDFWQDWSE NGRQAQNEEQ LLREAVFGHV EAGSHLRACR QEPGGHCSIG 51 100 ENSP00000393963/1-673 ---------- ---------- ------QRSP LLEVKGNIEL KRPLIKAPSQ ENSTTRP00000006529/1-670 ---------- ---------- ------QRSP LLEVKGNIEL KRALAKAPSR ENSBTAP00000002136/1-670 ---------- ---------- ------QRSP LLEVKGNVEL KRPLAKAASR bmy_14336T0/1-674 ---------- ---------- -----QQRSP LLEVKGNIEL KRALAKAPSR BACU012222/1-1193 IFRDEPEAFL SRINHKAHSS LGLSVEQRSP LLEVKGNIEL KRALAKAPSR 101 150 ENSP00000393963/1-673 LPLSGSRLKR RPDQMEDGLE PEKKRTRGLG ATTKITTSHP RVPSLTTVPQ ENSTTRP00000006529/1-670 LPLPGSRLKR GPDQMEEDLE PEKKRTRGLG --TKVATSRP RATALTTVPQ ENSBTAP00000002136/1-670 LPLSGRRLKR GPDQMEEALE PEKKRTRGLG --TRVTTTHP RAAALSSAPQ bmy_14336T0/1-674 LPLPGSRLKR GPDQMEEDLE PEKKRTRGLG --TKVATSRP RATALTTVPQ BACU012222/1-1193 LPLPGSRLKR GPDQMEEDLE PEKKRTRGLG --TKVATSRP RATALTTVPQ 151 200 ENSP00000393963/1-673 TQGQTTAQKV SKKTGPRCST AIATGLKNQK PVPAVPVQKS GTSGVPPMAG ENSTTRP00000006529/1-670 TQGQTAVPKV PRKTGPPCST AIATVLKNQK PGPAVPAQKP GTTAAPPVVG ENSBTAP00000002136/1-670 TQGQTAVPKA PRKPAPRCST AVAPVLKTQK PGPVVPVQKP GTTAAPPMVG bmy_14336T0/1-674 TQGQTAVPKV PRKTGPRCST AVATVLKNQK PGPAVPAQKP GTTAAPPVVG BACU012222/1-1193 TQGQTAVPKV PRKTGPRCST AVAT------ ---------- -ATAAPPVVG 201 250 ENSP00000393963/1-673 GKKPSKRPAW DLKGQLCDLN AELKRCRERT QTLDQENQQL QDQLRDAQQQ ENSTTRP00000006529/1-670 RKKPSKRPAW DLKGQLCDLN AELKCCRERT QMLDQENQQL RNQL-EAQQQ ENSBTAP00000002136/1-670 GKKP-KRPAW DLKGQLCDLN AELKCYRERK QVLDQENQQL RDQLQEAQQQ bmy_14336T0/1-674 RKKPSKRPAW DLKGQLCDLN AELKCCRERT QLLDQENQQL RNQLREAQQQ BACU012222/1-1193 RKKPSKRPAW DLKGQLCDLN AELKCCRERT QLLDQENQQL RNQLREAQQQ 251 300 ENSP00000393963/1-673 VKALGTERTT LEGHLAKVQA QAEQGQQELK NLRACVLELE ERLSTQEGLV ENSTTRP00000006529/1-670 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000002136/1-670 ALALGAERKT LEEELTRVRA QAEQGQRELG NLSARVLELE ERLGTQEGLV bmy_14336T0/1-674 ATELGAERRT LEEELARMRV QAEQGQRELG NLSTRVLELE ERLGTQEGLV BACU012222/1-1193 ATELGAERRT LEEELARMRV QAEQGQRELG NLSARVLELE ---------- 301 350 ENSP00000393963/1-673 QELQKKQVEL QEERRGLMSQ LEEKERRLQT SEAALSSSQA EVASLRQETV ENSTTRP00000006529/1-670 XXXXXXXXXX XXXXXXXXXX XXXXXRRLQA SEAALSGSQA EVASLRQEAA ENSBTAP00000002136/1-670 QELQKEQLRL QEERRGLAAR LGEQERRLQT SEASLSDSQE EVASLRQEAA bmy_14336T0/1-674 QELQKEQLEL QEERRGLAAR LEEQERRLQA SEAALSGSQA EVASLRQEAA BACU012222/1-1193 ---------- ---------- ----EGRLQA SEAALSGSQA EVASLRQEAA 351 400 ENSP00000393963/1-673 AQAALLTERE ERLHGLEMER RRLHNQLQEL KGNIRVFCRV RPVLPGEPTP ENSTTRP00000006529/1-670 AQADLLANRE ERLHGLEMER RRLHNQLQEL KGNVRVFCRV RPVLPGESTP ENSBTAP00000002136/1-670 AREAILAERE DRLHGLEMER RRLHNQLQEL KGNIRVFCRV RPVLPGESTP bmy_14336T0/1-674 AQAALLAKRE ERLHGLEMER RRLHNQLQEL KGNVRVFCRV RPVLPGESTP BACU012222/1-1193 AQAALLAKRE ERLHGLEMER RRLHNQLQEL KGNVRVFCRV RPVLPGESTP 401 450 ENSP00000393963/1-673 PPGLLLFPSG PGGPSDPPTR LSLSRSDERR GTLSGAPAPP TRHDFSFDRV ENSTTRP00000006529/1-670 PPGFLLFPSG PSGPSDPPTR LSLSRSDERR GTLSGAPAAP TRHDFSFDRV ENSBTAP00000002136/1-670 SPGFLQFPSG PCGPSDPPTR LSLSRSDERR GTLSGAPAGP TRHEFSFDRV bmy_14336T0/1-674 PAGFLLFPSG PSGPSDPPTR LSLSRSDERR GTLSGAPAAP TRHDFSFDRV BACU012222/1-1193 PSGFLLFPSG PSGPSDPPTR LSLSRSDERR GTLSGAPAAP TRHDFSFDRV 451 500 ENSP00000393963/1-673 FPPGSGQDEV FEEIAMLVQS ALDGYPVCIF AYGQTGSGKT FTMEGGPGGD ENSTTRP00000006529/1-670 FPPGSGQDEV FEEISMLVQS ALDGYPVCIF AYGQTGSGKT FTMEGGPGGD ENSBTAP00000002136/1-670 FPPGSGQDEV FEEISMLVQS ALDGYPVCIF AYGQTGSGKT FTMEGGPGGD bmy_14336T0/1-674 FPPGSGQDEV FEEISMLVQS ALDGYPVCIF AYGQTGSGKT FTMEGGPGGD BACU012222/1-1193 FPPGSGQDEV FEEISMLVQS ALDGYPVCIF AYGQTGSGKT FTMEGGPGGD 501 550 ENSP00000393963/1-673 PQLEGLIPRA LRHLFSVAQE LSGQGWTYSF VASYVEIYNE TVRDLLATGT ENSTTRP00000006529/1-670 PQVEGLIPRA LRHLFSVAQE LSGQGWTYSF VASYVEIYNE TVRDLLATGT ENSBTAP00000002136/1-670 PQMEGLIPRA LRHLFSVAQE LSGQGWTYSF VASYVEIYNE TVRDLLATGT bmy_14336T0/1-674 PQVEGLIPRA LRHLFSVAQE LSGQGWTYSF VASYVEIYNE TVRDLLATGT BACU012222/1-1193 PQVEGLIPRA LRHLFSVAQE LSGQGWTYSF VASYVEIYNE TVRDLLATGT 551 600 ENSP00000393963/1-673 RKGQGGECEI RRAGPGSEEL TVTNARYVPV SCEKEVDALL HLARQNRAVA ENSTTRP00000006529/1-670 RKGHGGECEI RRAGPGSEEL TVTNARYVPV SCEREVEALL HLARQNRAVA ENSBTAP00000002136/1-670 RKGQGGECEI RRAGPGSEEL TVTNARYVPV SCEREVEALL HLARQNRAVA bmy_14336T0/1-674 RKGHGGECEI RRAGPGSEEL TVTNARYVPV SCEREVEALL HLARQNRAVA BACU012222/1-1193 RKGHGGECEI RRAGPGSEEL TVTNARYVPV SCEREVEALL HLARQNRAVA 601 650 ENSP00000393963/1-673 RTAQNERSSR SHSVFQLQIS GEHSSRGLQC GAPLSLVDLA GSERLDPGLA ENSTTRP00000006529/1-670 RTAQNERSSR SHSVFQLQIS GEHAGRGLQC VAPLSLVDLA GSERLDPGLA ENSBTAP00000002136/1-670 RTAQNERSSR SHSVFQLQIS GEHASRGLQC AAPLSLVDLA GSERLDPGLA bmy_14336T0/1-674 RTAQNERSSR SHSVFQLQIS GEHAGRGLQC AAPLSLVDLA GSERLDPGLA BACU012222/1-1193 RTAQNERSSR SHSVFQLQIS GEHAGRGLQC AAPLSLVDLA GSERLDPGLA 651 700 ENSP00000393963/1-673 LGPGERERLR ETQAINSSLS TLGLVIMALS NKESHVPYRN SKLTYLLQNS ENSTTRP00000006529/1-670 LGPGERERLR ETQAINSSLS TLGLVIMALS NKESHVPYRN SKLTYLLQNS ENSBTAP00000002136/1-670 LGPGERERLR ETQAINSSLS TLGLVIMALS NKESHVPYRN SKLTYLLQNS bmy_14336T0/1-674 LGPGERERLR ETQAINSSLS TLGLVIMALS NKESHVPYRN SKLTYLLQNS BACU012222/1-1193 LGPGERERLR ETQAINSSLS TLGLVIMALS NKESHVPYRN SKLTYLLQNS 701 750 ENSP00000393963/1-673 LGGSAKMLMF VNISPLEENV SESLNSLRFA SKVN------ ---------- ENSTTRP00000006529/1-670 LGGSAKMLMF VNISPLEENV SESLNSLRFA SKVN------ ---------- ENSBTAP00000002136/1-670 LGGSAKMLMF VNISPLEENV SESLNSLRFA SKVN------ ---------- bmy_14336T0/1-674 LGGSAKMLMF VNISPLEENV SESLNSLRFA SKV------- ---------- BACU012222/1-1193 LGGSAKMLMF VNISPLEENV SESLNSLRFA SKVDSAREVC LVQFEDDSQF 751 800 ENSP00000393963/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006529/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002136/1-670 ---------- ---------- ---------- ---------- ---------- bmy_14336T0/1-674 ---------- ---------- ---------- ---------- ---------- BACU012222/1-1193 LVLWKDISPA ALPGEELLCC VCRSETVVPG NRLVSCEKCR HAYHQDCHVP 801 850 ENSP00000393963/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006529/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002136/1-670 ---------- ---------- ---------- ---------- ---------- bmy_14336T0/1-674 ---------- ---------- ---------- ---------- ---------- BACU012222/1-1193 RAPAPGEGEG TSWVCRQCVF AIATKRGGAL KKGPYARAML GMKLSLPYGL 851 900 ENSP00000393963/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006529/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002136/1-670 ---------- ---------- ---------- ---------- ---------- bmy_14336T0/1-674 ---------- ---------- ---------- ---------- ---------- BACU012222/1-1193 KGLDWDAGHL SNRQQSYCYC GGPGEWNLKM LQCRSCLQWF HEACTQCLSK 901 950 ENSP00000393963/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006529/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002136/1-670 ---------- ---------- ---------- ---------- ---------- bmy_14336T0/1-674 ---------- ---------- ---------- ---------- ---------- BACU012222/1-1193 PLLYGDRFYE FECCVCRGGP EKVRRLQLRW VDVAHLVLYH LSVCCKKKYF 951 1000 ENSP00000393963/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006529/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002136/1-670 ---------- ---------- ---------- ---------- ---------- bmy_14336T0/1-674 ---------- ---------- ---------- ---------- ---------- BACU012222/1-1193 DFDREILPFT SENWDSLLLG ELSDTPKGER SSRLLSALNS HKDRFISGRE 1001 1050 ENSP00000393963/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006529/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002136/1-670 ---------- ---------- ---------- ---------- ---------- bmy_14336T0/1-674 ---------- ---------- ---------- ---------- ---------- BACU012222/1-1193 IKKRKCLFGL HARIPPPVEP PTGDGAPTSF PSGQGPGGGV SRPLGKRRRP 1051 1100 ENSP00000393963/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006529/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002136/1-670 ---------- ---------- ---------- ---------- ---------- bmy_14336T0/1-674 ---------- ---------- ---------- ---------- ---------- BACU012222/1-1193 EPEPLRRRQK GKMEELGPPS AVRNQPEPQE QRERARLQRA LQASVSPPPS 1101 1150 ENSP00000393963/1-673 ---------- ---------Q CVI------- ---------- ---------- ENSTTRP00000006529/1-670 ---------- ---------Q CVI------- ---------- ---------- ENSBTAP00000002136/1-670 ---------- ---------Q CVI------- ---------- ---------- bmy_14336T0/1-674 ---------- ---------R SLP------- ---------- ---------- BACU012222/1-1193 SPNQSYQGSS GYNFRPTDAR CLPSSPIRMF ASFHPSASTA GTSGDGEPPD 1151 1200 ENSP00000393963/1-673 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006529/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000002136/1-670 ---------- ---------- ---------- ---------- ---------- bmy_14336T0/1-674 ---------- ---------- --------VP SLS------- ---------- BACU012222/1-1193 RSPLELHIGF PTDLPKSAPH SMTASSSSVP APSPGLPRRS APPSPLCRSL 1201 1250 ENSP00000393963/1-673 ---------- --GTAQANRK ---------- ---------- ------ ENSTTRP00000006529/1-670 ---------- --GTAQANRK ---------- ---------- ------ ENSBTAP00000002136/1-670 ---------- --GTAQANKK ---------- ---------- ------ bmy_14336T0/1-674 ---------- --GLL----- ---------- ---------- ---GIM BACU012222/1-1193 SPGTGGGVRG GVGYLSRGDP VRVLARRVRP DGSVQYLVEW GGGGIF