KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:54 2014 Check: 00 .. Name: bmy_16191T0/1-1054 Len: 1143 Check: 3792 Weight: 1.00 Name: ENSP00000351250/1-1127 Len: 1143 Check: 5684 Weight: 1.00 Name: ENSBTAP00000001967/1-1126 Len: 1143 Check: 3992 Weight: 1.00 Name: BACU018655/1-1088 Len: 1143 Check: 1203 Weight: 1.00 Name: ENSTTRP00000002542/1-1127 Len: 1143 Check: 8158 Weight: 1.00 // 1 50 bmy_16191T0/1-1054 MAENKGGGEA ESGGGGSSSA PVT------- -------LAA VLVEEEEEEG ENSP00000351250/1-1127 MAENKGGGEA ESGGGGSGSA PVTAGAAGPA AQEAEPPLTA VLVEEEEEEG ENSBTAP00000001967/1-1126 MAENKGGGEA ESGGGGSSSA PVTAGAAGLA AQEAEPPLAA VLVEEEEEEG BACU018655/1-1088 ---------- ---------- ---------- ---------- VLVEEEEEEG ENSTTRP00000002542/1-1127 MAENKGGGEA ESGGGGSSSA LVTVGSVRSA AQEAEPPLPP VLVEEEEEEG 51 100 bmy_16191T0/1-1054 GRAGAESGAA GPDDGGVAAA SSGSAPAASA PAASVGPGVS GGAVSTPAPA ENSP00000351250/1-1127 GRAGAEGGAA GPDDGGVAAA SSGSAQAASS PAASVGTGVA GGAVSTPAPA ENSBTAP00000001967/1-1126 GRAGAESGAA GPDDGGVAAA SSGSAPAASA PAASMGPGVP GGAVSTPAPA BACU018655/1-1088 GRAGAESGAA GPDDGGVAAA SSGSAPAASA PAASVGPGVS GGAVSTPAPA ENSTTRP00000002542/1-1127 GKAGAESGAA GPDDGGVAAA SSGSAPAASA HAASVGPGIP GGAVSTPAPA 101 150 bmy_16191T0/1-1054 PASVPAPGPS AGPPPGPPAS LLDTCAVCQQ SLQSRREAEP KLLPCLHSFC ENSP00000351250/1-1127 PASAPAPGPS AGPPPGPPAS LLDTCAVCQQ SLQSRREAEP KLLPCLHSFC ENSBTAP00000001967/1-1126 PASAPAPGPS AGPPPGPPAS LLDTCAVCQQ SLQSRREAEP KLLPCLHSFC BACU018655/1-1088 PASVPAPGPS AGPPPGPPAS LLDTCAVCQQ SLQSRREAEP KLLPCLHSFC ENSTTRP00000002542/1-1127 PASAPAPGPS AGPPPGPPAS LLDTCAVCQQ SLQSRREAEP KLLPCLHSFC 151 200 bmy_16191T0/1-1054 LRCLPEPERQ LNVPIPGGSN GDIQQVGVIR CPVCRQECRQ IDLVDNYFVK ENSP00000351250/1-1127 LRCLPEPERQ LSVPIPGGSN GDIQQVGVIR CPVCRQECRQ IDLVDNYFVK ENSBTAP00000001967/1-1126 LRCLPEPERQ LNVPIPGGSN GDIQQVGVIR CPVCRQECRQ IDLVDNYFVK BACU018655/1-1088 LRCLPEPERQ LNVPIPGGSN GDIQQVGVIR CPVCRQECRQ IDLVDNYFVK ENSTTRP00000002542/1-1127 LRCLPEPERQ LNVPIPGGSN GDIQQVGVIR CPVCRQECRQ IDLVDNYFVK 201 250 bmy_16191T0/1-1054 DTSEAPSSSD EKSEQVCTSC EDNASAVGFC VECGEWLCKT CIEAHQRVKF ENSP00000351250/1-1127 DTSEAPSSSD EKSEQVCTSC EDNASAVGFC VECGEWLCKT CIEAHQRVKF ENSBTAP00000001967/1-1126 DTSETPSSSD EKSEQVCTSC EDNASAVGFC VECGEWLCKT CIEAHQRVKF BACU018655/1-1088 DTSEAPSSSD EKSEQVCTSC EDNASAVGFC VECGEWLCKT CIEAHQRVKF ENSTTRP00000002542/1-1127 DTSEAPSSSD EKSEQVCTSC EDNASAVGFC VECGEWLCKT CIEAHQRVKF 251 300 bmy_16191T0/1-1054 TKDHLIRKKE DVSESVGASG QRPVFCPVHK QEQLKLFCET CDRLTCRDCQ ENSP00000351250/1-1127 TKDHLIRKKE DVSESVGASG QRPVFCPVHK QEQLKLFCET CDRLTCRDCQ ENSBTAP00000001967/1-1126 TKDHLIRKKE DVSESVGASG QRPVFCPVHK QEQLKLFCET CDRLTCRDCQ BACU018655/1-1088 TKDHLIRKKE DVSESVGASG QRPVFCPVHK QEQLKLFCET CDRLTCRDCQ ENSTTRP00000002542/1-1127 TKDHLIRKKE DVSESVGASG QRPVFCPVHK QEQLKLFCET CDRLTCRDCQ 301 350 bmy_16191T0/1-1054 LLEHKEHRYQ FLEEAFQNQK GAIENLLAKL LEKKNYVHFA ATQVQNRIKE ENSP00000351250/1-1127 LLEHKEHRYQ FLEEAFQNQK GAIENLLAKL LEKKNYVHFA ATQVQNRIKE ENSBTAP00000001967/1-1126 LLEHKEHRYQ FLEEAFQNQK GAIENLLAKL LEKKNYVHFA ATQVQNRIKE BACU018655/1-1088 LLEHKEHRYQ FLEEAFQNQK GAIENLLAKL LEKKNYVHFA ATQVQNRIKE ENSTTRP00000002542/1-1127 LLEHKEHRYQ FLEEAFQNQK GAIENLLAKL LEKKNYVHFA ATQVQNRIKE 351 400 bmy_16191T0/1-1054 VNETNKRVEQ EIKVAIFTLI NEINKKGKSL LQQLE----- ---------- ENSP00000351250/1-1127 VNETNKRVEQ EIKVAIFTLI NEINKKGKSL LQQLENVTKE RQMKLLQQQN ENSBTAP00000001967/1-1126 VNETNKRVEQ EIKVAIFTLI NEINKKGKSL LQQLENVTKE RQMKLLQQQN BACU018655/1-1088 VNETNKRVEQ EIKVAIFTLI NEINKKGKSL LQQLENVTKE RQMKLLQQQN ENSTTRP00000002542/1-1127 VNETNKRVEQ EIKVAIFTLI NEINKKGKSL LQQLENVTKE RQMKLLQQQN 401 450 bmy_16191T0/1-1054 ---------- ---------- ---------- ----ITFQLR HILKARCDPV ENSP00000351250/1-1127 DITGLSRQVK HVMNFTNWAI ASGSSTALLY SKRLITFQLR HILKARCDPV ENSBTAP00000001967/1-1126 DITGLSRQVK HVMNFTNWAI ASGSSTALLY SKRLITFQLR HILKARCDPV BACU018655/1-1088 DITGLSRQVK HVMNFTNWAI ASGSSTALLY SKRLITFQLR HILKARCDPV ENSTTRP00000002542/1-1127 DITGLSRQVK HVMNFTNWAI ASGSSTALLY SKRLITFQLR HILKARCDPV 451 500 bmy_16191T0/1-1054 PAANGAIRFH CDPTFWAKNV VNLGNLVIES KPAPGYTPNV VVGQVPPGTN ENSP00000351250/1-1127 PAANGAIRFH CDPTFWAKNV VNLGNLVIES KPAPGYTPNV VVGQVPPGTN ENSBTAP00000001967/1-1126 PAANGAIRFH CDPTFWAKNV VNLGNLVIES KPAPGYTPNV VVGQVPPGTN BACU018655/1-1088 PAANGAIRFH CDPTFWAKNV VNLGNLVIES KPTPGYTPNV VVGQVPPGTN ENSTTRP00000002542/1-1127 PAANGAIRFH CDPTFWAKNV VNLGNLVIES KPAPGYTPNV VVGQVPPGTN 501 550 bmy_16191T0/1-1054 HISKTPGQIN LAQLRLQHMQ QQVYAQKHQQ LQQMRMQQPP APVPTTTATT ENSP00000351250/1-1127 HISKTPGQIN LAQLRLQHMQ QQVYAQKHQQ LQQMRMQQPP APVPTTTTTT ENSBTAP00000001967/1-1126 HISKTPGQIN LAQLRLQHMQ QQVYAQK-QQ LQQMRMQQPP APVPTTTTTT BACU018655/1-1088 HISKTPGQIN LAQLRLQHMQ QQVYAQKHQQ LQQMRMQQPP APVPTTTATT ENSTTRP00000002542/1-1127 HISKTPGQIN LAQLRLQHMQ QQVYAQKHQQ LQQMRMQQPP APVPTTTATT 551 600 bmy_16191T0/1-1054 QQHPRQAAPQ MLQQQATAKI DQCASNAKRQ HELWSFPSPS DEIGSECCPN ENSP00000351250/1-1127 QQHPRQAAPQ MLQQQPPRLI S-VQTMQRGN MNCGAFQAHQ MRLAQNA--- ENSBTAP00000001967/1-1126 QQHSRQAAPQ MLQQQPPRLI S-VQAMQRGN MNCGAFQAHQ MRLAQNA--- BACU018655/1-1088 QQHPRQAAPQ MLQQQASIII SLVQAMQRGN MNCGAFQAHQ MRLAQNA--- ENSTTRP00000002542/1-1127 QQHPRQAAPQ MLQQQPPRLI S-VQAMQRGN MNCGAFQAHQ MRLAQNA--- 601 650 bmy_16191T0/1-1054 TRDTQAQWPS VFHDAATPPK TSMPRVPF-H SNPGHAGPFP VVSVHNNPVN ENSP00000351250/1-1127 -----ARIPG IPRHSGPQYS MMQPHLQRQH SNPGHAGPFP VVSVHNTTIN ENSBTAP00000001967/1-1126 -----TRIPG IPRHSGPQYS MMQPHLQRQH SNPGHAGPFP VVSVHNNPVN BACU018655/1-1088 -----ARIPG IPRHSGPQYS MMQPHLQRQH SNPGHAGPFP VVSVHNNPVN ENSTTRP00000002542/1-1127 -----ARIPG IPRHSGPQYS MMQPHLQRQH SNPGHAGPFP VVSVHNNPVN 651 700 bmy_16191T0/1-1054 PTSPTTATMA NANRGPTSPS VTAIELIPSV TNPENLPSLP DIPPIQLEDA ENSP00000351250/1-1127 PTSPTTATMA NANRGPTSPS VTAIELIPSV TNPENLPSLP DIPPIQLEDA ENSBTAP00000001967/1-1126 PTSPTTATMA NANRGPTSPS VTAIELIPSV TNPENLPSLP DIPPIQLEDA BACU018655/1-1088 PTSPTTATMA NANRGPTSPS VTAIELIPSV TNPENLPSLP DIPPIQLEDA ENSTTRP00000002542/1-1127 PTSPTTATMA NANRGPTSPS VTAIELIPSV TNPENLPSLP DIPPIQLEDA 701 750 bmy_16191T0/1-1054 GSSSLDNLLS RYISGSHLPP QPTSTMNPSP GPSALSPGSS DKDSKAETVI ENSP00000351250/1-1127 GSSSLDNLLS RYISGSHLPP QPTSTMNPSP GPSALSPGSS GLSNSHTPVR ENSBTAP00000001967/1-1126 GSSSLDNLLS RYISGSHLPP QPTSTMNPSP GPSALSPGSS GLSNSHTPVR BACU018655/1-1088 GSSSLDNLLS RYISGSHLPP QPTSTMNPSP GPSALSPGSS GLSNSHTPVR ENSTTRP00000002542/1-1127 GSSSLDNLLS RYISGSHLPP QPTSTMNPSP GPSALSPGSS GLSNSHTPVR 751 800 bmy_16191T0/1-1054 PLRTLHEPLL LRFPSDVWGC GSSGRTAEKT SLSFKSDQVK VKQEPGTEDE ENSP00000351250/1-1127 PPSTSST--- ----GSRGSC GSSGRTAEKT SLSFKSDQVK VKQEPGTEDE ENSBTAP00000001967/1-1126 PPSTSST--- ----GSRGSC GSSGRTAEKT NLSFKSDQVK VKQEPGTEDE BACU018655/1-1088 PPSTSST--- ----GSRGSC GSSGRTAEKT SLSFKSDQVK VKQEPGTEDE ENSTTRP00000002542/1-1127 PPSTSST--- ----GSRGSC GSSGRTAEKT SLSFKSDQVK VKQEPGTEDE 801 850 bmy_16191T0/1-1054 ICSFSGAVKQ EKTEDGRRSA CMLSSPESSL TPPLSTSLHL ESELDALAGL ENSP00000351250/1-1127 ICSFSGGVKQ EKTEDGRRSA CMLSSPESSL TPPLSTNLHL ESELDALASL ENSBTAP00000001967/1-1126 ICSFSGAVKQ EKTEDGRRSA CMLSSPESSL TPPLSTNLHL ESELDTLTSL BACU018655/1-1088 ICSFSGAVKQ EKTEDGRRSA CMLSSPESSL TPPLSTSLHL ESELDALAGL ENSTTRP00000002542/1-1127 ICSFSGAVKQ EKTEDGRRSA CMLSSPESSL TPPLSTSLHL ESELDALAGL 851 900 bmy_16191T0/1-1054 ENHVKTEPAD VNESCKQSGL NSLVNGKSPV RSLMHRSARI GGDGSSKDDD ENSP00000351250/1-1127 ENHVKIEPAD MNESCKQSGL SSLVNGKSPI RSLMHRSARI GGDGNNKDDD ENSBTAP00000001967/1-1126 ENHVKTEPAD MNESCKQSGL NSLVNGKSPV RSLMHRSARI GGDGSSKDDD BACU018655/1-1088 ENHVKTEPAD VNESCKQSGL NSLVNGKSPV RSLMHRSARI GGDGSSKDDD ENSTTRP00000002542/1-1127 ENHVKTEPTD VNESCKQSGL NSLVNGKSPV RSLMHRSARI GGDGSSKDDD 901 950 bmy_16191T0/1-1054 PNEDWCAVCQ NGGDLLCCEK CPKVFHLTCH VPTLLSFPSG DWICTFCRDI ENSP00000351250/1-1127 PNEDWCAVCQ NGGDLLCCEK CPKVFHLTCH VPTLLSFPSG DWICTFCRDI ENSBTAP00000001967/1-1126 PNEDWCAVCQ NGGDLLCCEK CPKVFHLTCH VPTLLSFPSG DWICTFCRDI BACU018655/1-1088 PNEDWCAVCQ NGGDLLCCEK CPKVFHLTCH VPTLLSFPSG DWICTFCRDI ENSTTRP00000002542/1-1127 PNEDWCAVCQ NGGDLLCCEK CPKVFHLTCH VPTLLSFPSG DWICTFCRDI 951 1000 bmy_16191T0/1-1054 GKPEVEYDCD NLQHSKKGKT AQGLSPVDQR ---------- ---------- ENSP00000351250/1-1127 GKPEVEYDCD NLQHSKKGKT AQGLSPVDQR KCERLLLYLY CHELSIEFQE ENSBTAP00000001967/1-1126 GKPEVEYDCD NLQHSKKGKT AQGLSPVDQR KCERLLLYLY CHELSIEFQE BACU018655/1-1088 GKPEVEYDCD NLQHSKKGKT AQGLSPVDQR KCERLLLYLY CHELSIEFQE ENSTTRP00000002542/1-1127 GKPEVEYDCD NLQHSKKGKT AQGLSPVDQR KCERLLLYLY CHELSIEFQE 1001 1050 bmy_16191T0/1-1054 -----IPNYY KIIKKPMDLS TVKKKLQKKH SQHYQIPDDF VADVRLIFKN ENSP00000351250/1-1127 PVPASIPNYY KIIKKPMDLS TVKKKLQKKH SQHYQIPDDF VADVRLIFKN ENSBTAP00000001967/1-1126 PVPASIPNYY KIIKKPMDLS TVKKKLQKKH SQHYQIPDDF VADVRLIFKN BACU018655/1-1088 PVPASIPNYY KIIKKPMDLS TVKKKLQKKH SQHYQIPDDF VADVRLIFKN ENSTTRP00000002542/1-1127 PVPASIPNYY KIIKKPMDLS TVKKKLQKKH SQHYQIPDDF VADVRLIFKN 1051 1100 bmy_16191T0/1-1054 CERFNEMMKV VQVYAETQEI NLKADSEVAQ AGKAVALYFE DKLTEIYSDR ENSP00000351250/1-1127 CERFNEMMKV VQVYADTQEI NLKADSEVAQ AGKAVALYFE DKLTEIYSDR ENSBTAP00000001967/1-1126 CERFNEMMKV VQVYAETQEI NLKADSEVAQ AGKAVALYFE DKLTEIYSDR BACU018655/1-1088 CERFNEMMKV VQVYAETQEI NLKADSEVAQ AGKAVALYFE DKLTEIYSDR ENSTTRP00000002542/1-1127 CERFNEMMKV VQVYAETQEI NLKADSEVAQ AGKAVALYFE DKLTEIYSDR 1101 1150 bmy_16191T0/1-1054 TFAPLPEFEQ EEDDGEVTED SDEDFIQPRR KRLKSDERPV HIK ENSP00000351250/1-1127 TFAPLPEFEQ EEDDGEVTED SDEDFIQPRR KRLKSDERPV HIK ENSBTAP00000001967/1-1126 TFAPLPEFEQ EEDDGEVTED SDEDFIQPRR KRLKSDERPV HIK BACU018655/1-1088 TFAPLPEFEQ EEDDGEVTED SDEDFIQPRR KRLKSDERPV HIK ENSTTRP00000002542/1-1127 TFAPLPEFEQ EEDDGEVTED SDEDFIQPRR KRLKSDERPV HIK