KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:29 2014 Check: 00 .. Name: ENSTTRP00000002731/1-946 Len: 1075 Check: 2909 Weight: 1.00 Name: ENSP00000303434/1-1042 Len: 1075 Check: 6407 Weight: 1.00 Name: ENSBTAP00000001785/1-1040 Len: 1075 Check: 4367 Weight: 1.00 Name: bmy_03461T0/1-926 Len: 1075 Check: 9605 Weight: 1.00 Name: BACU013545/1-794 Len: 1075 Check: 23 Weight: 1.00 // 1 50 ENSTTRP00000002731/1-946 ---------- ---------- ---------- ---------- ---------- ENSP00000303434/1-1042 MDKILEGLVS SSHPLPLKRV IVRKVVESAE HWLDEAQCEA MFDLTTRLIL ENSBTAP00000001785/1-1040 MDKILEGLVS SSHPLPLKRV IVRKVVESAE HWLDEAQCEA MFDLTTRLIL bmy_03461T0/1-926 MDKILEGLVS SSHPLPLKRV IVRKVVESAE HWLDEAQCEA MFDLTTRLIL BACU013545/1-794 MDKILEGLVS SSHPLPLKRV IVRKVVESAE HWLDEAQCEA MFDLTTRLIL 51 100 ENSTTRP00000002731/1-946 ---------- ---------- ---------- ---------- ----SLDR-D ENSP00000303434/1-1042 EGQDPFQRQV GHQVLEAYAR YHRPEFESFF NKTFVLGLLH QGYHSLDRKD ENSBTAP00000001785/1-1040 EGQDPFQRQV GHQVLEAYAR YHRPEFESFF NKTFVLGLLQ QGYHSLDRKD bmy_03461T0/1-926 EGQDPFQRQV GHQVLEAYAR YHRPEFESFF NKTFVLGLLQ QGYHSLDRKD BACU013545/1-794 EGQDLFQRQV GHQVLEAYAR YHRPEFESFF NKTFVLGLLQ QGYHSLDRKD 101 150 ENSTTRP00000002731/1-946 VAILDYIHYT GLKLIMSCPS VLDLFSLLQV EVLRMVCERP EPQLCARLSD ENSP00000303434/1-1042 VAILDYIH-N GLKLIMSCPS VLDLFSLLQV EVLRMVCERP EPQLCARLSD ENSBTAP00000001785/1-1040 VAIVDYIH-N GLKLIMSCPS VLDLFSLLQV EVLRMVCERP EPQLCARLSD bmy_03461T0/1-926 VAILDYIH-N GLKLIMSCPS VLDLFSLLQV EVLRMVCERP EPQLCARLSD BACU013545/1-794 VAILDYIH-N GLKLIMSCPS VLDLFSLLQV EVLRMVCERP GPQLCARLSD 151 200 ENSTTRP00000002731/1-946 LLTDFVQCIP KGKLSITFCQ QLVRTIGHFQ CVSTQEKELR EYVSQVTKVS ENSP00000303434/1-1042 LLTDFVQCIP KGKLSITFCQ QLVRTIGHFQ CVSTQERELR EYVSQVTKVS ENSBTAP00000001785/1-1040 LLTDFVQCIP KGKLSITFCQ QLVRTIGHFQ CVSTQEKELR EYVSQVTKVS bmy_03461T0/1-926 LLTDFVQCIP KGKLSITFCQ QLVRTIGHFQ CVSTQEKELR EYVSQVTKVS BACU013545/1-794 LLADFVQCIP KGKLSITFCQ QLVRTIGHFQ CVSTQEKELR EYVSQVTKVS 201 250 ENSTTRP00000002731/1-946 NLLQNIWKAE PSTLLPSLQE VFASISST-- DASFEPSVAL ASLVQHIPLQ ENSP00000303434/1-1042 NLLQNIWKAE PATLLPSLQE VFASISST-- DASFEPSVAL ASLVQHIPLQ ENSBTAP00000001785/1-1040 NLLQNIWKAE PSTLLPSLQE VFASISST-- DASFEPSVAL ASLVQHIPLQ bmy_03461T0/1-926 NLLQNIWKAE PSTLLPSLQE VFASISSTEI DASFEPSVAL ASLVQHIPLQ BACU013545/1-794 NLLQNIWKAE PSTLLPSLQE VFASISSTEI DASFEPSVAL ASLVQHIPLQ 251 300 ENSTTRP00000002731/1-946 MITVLIRSLT TDPNVKDASM TQALCRMIDW LSWPLAQHVD TWVIALLKGL ENSP00000303434/1-1042 MITVLIRSLT TDPNVKDASM TQALCRMIDW LSWPLAQHVD TWVIALLKGL ENSBTAP00000001785/1-1040 MITVLIRSLT TDPNVKDASM TQALCRMIDW LSWPLAQHVD TWVIALLKGL bmy_03461T0/1-926 MITVLIRSLT TDPNVKDASM TQALCRMIDW LSWPLAQHVD TWVIALLKGL BACU013545/1-794 MITVLIRSLT TDPNVKDASM TQALCRMIDW LSWPLAQHVD TWVIALLKGL 301 350 ENSTTRP00000002731/1-946 AAVQKFTILI DVTLLKIELV FNRLWFPLVR PGALTVLSHM LLSFQHSPEA ENSP00000303434/1-1042 AAVQKFTILI DVTLLKIELV FNRLWFPLVR PGALAVLSHM LLSFQHSPEA ENSBTAP00000001785/1-1040 AAVQKFTILI DVTLLKIELV FNRLWFPLVR PGALAVLSHM LLSFQHSPEA bmy_03461T0/1-926 AAVQKFTILI DVTLLKIELV FNRLWFPLVR PGALTVLSHM LLSFQHSPEA BACU013545/1-794 AAVQKFTILI DVTLLKIELV FNRLWFPLVR PGALTVLSHM LLSFQHSPEA 351 400 ENSTTRP00000002731/1-946 FHL------- ---------- ---------- ---XXXXXXX XXXXXXXXXX ENSP00000303434/1-1042 FHL------- ---------- ---------- ---IVPHVVN LVHSFKNDGL ENSBTAP00000001785/1-1040 FHL------- ---------- ---------- ---IVPHVVN LVHSFKSDGL bmy_03461T0/1-926 FHLYLKFNEY HNNVCKYLDL LIQKKNQLSD IQKIVPHVVN LVHSFKSDGL BACU013545/1-794 FHL------- ---------- ---------- ---IVPHVVN LVHSFKSDGL 401 450 ENSTTRP00000002731/1-946 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXK PSEEKIKLIL ENSP00000303434/1-1042 PSSTAFLVQL TELIHCMMYH YSGFPDLYEP ILEAIKDFPK PSEEKIKLIL ENSBTAP00000001785/1-1040 PSSTAFLVQL TELIHCMMYH YSGFPDLYEP ILEAIKDFPK PSEEKIKLIL bmy_03461T0/1-926 PSSTTFLVQL TELIHCMMYH YSGFPDLYEP ILEAIKDFPK PSEEKIKLIL BACU013545/1-794 PSSTTFLVQL TELIHCMMYH YSGFPDLYEP ILEAIKDFPK PSEEKIKLIL 451 500 ENSTTRP00000002731/1-946 SQSAWTSQSN SLASCLSRLS GKSETGKTGL INLGNTCYMN SVIQALFMAT ENSP00000303434/1-1042 NQSAWTSQSN SLASCLSRLS GKSETGKTGL INLGNTCYMN SVIQALFMAT ENSBTAP00000001785/1-1040 NQSAWTSQSN SLASCLSRLS GKSETGKTGL INLGNTCYMN SVIQALFMAT bmy_03461T0/1-926 SQSAWTSQSN SLASCLSRLS GKSETGKTGL INLGNTCYMN SVIQALFMAT BACU013545/1-794 SQSAWTSQSN SLASCLSRLS GKSETGKTGL INLGNTCYMN SVIQALFMAT 501 550 ENSTTRP00000002731/1-946 DFRRQVLSLN LNGCNSLMKK LQHLFAFLAH TQXXXXXXXX XXXXXXXXXX ENSP00000303434/1-1042 DFRRQVLSLN LNGCNSLMKK LQHLFAFLAH TQREAYAPRI FFEASRPPWF ENSBTAP00000001785/1-1040 DFRRQVLSLN LNGCNSLMKK LQHLFAFLAH TQREAYAPRI FFEASRPPWF bmy_03461T0/1-926 D--------- ---------- ---------- ---------- ---------- BACU013545/1-794 E--------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000002731/1-946 XXXXXXXXXX XXXXXXXXLH EEEKILKVQS SHKLSESLGC SETSLQEVAN ENSP00000303434/1-1042 TPRSQQDCSE YLRFLLDRLH EEEKILKVQA SHKPSEILEC SETSLQEVAS ENSBTAP00000001785/1-1040 TPRSQQDCSE YLRFLLDRLH EEEKILKVQS SHKSSESPGC SETSLQEVAN bmy_03461T0/1-926 ---------- ---------- ---------Q ANRKSEVVSY VNT------- BACU013545/1-794 ---------- --------LH EEEKILKVQS SHKLSESLGC SETSLQEVAN 601 650 ENSTTRP00000002731/1-946 KAAVLTETPC TSDSEKTLIE KMFGGKLQTH ICCLNCRSTS QKVEAFTDLS ENSP00000303434/1-1042 KAAVLTETPR TSDGEKTLIE KMFGGKLRTH IRCLNCRSTS QKVEAFTDLS ENSBTAP00000001785/1-1040 KAAVLTETHC TSDGEKTLIE KMFGGKLRTH ICCLNCRSTS QKVEAFTDLS bmy_03461T0/1-926 ---------- ---------- ---------- IC-------- ---------- BACU013545/1-794 KAAVLTETPC TSDGEKTLIE KMFGGKLRTH ICCLNCRSTS QKVEAFTDLS 651 700 ENSTTRP00000002731/1-946 LAFCPSSSME NLSFQEPASS PSTQDGGLMQ ASVPGPSKEP GVCNPSTAAF ENSP00000303434/1-1042 LAFCPSSSLE NMSVQDPASS PSIQDGGLMQ ASVPGPSEEP VVYNPTTAAF ENSBTAP00000001785/1-1040 LAFCPSSSME NLSFQDPASS PSTQDDGLTQ ASGPGPSKEP GVCNASAVAI bmy_03461T0/1-926 ---------- ----KDPASS PSTQDGGLMQ ASVPGPSKEP GVCNPSTAAF BACU013545/1-794 LAFCPSSSME NLSFQDLASS PSTQDGGLMQ ASVPGLSKEP GVCNPSTAAF 701 750 ENSTTRP00000002731/1-946 ACYSAVNERM VDS-PDEFRC SEDTSVPNDS NKMLVNKDVP QKAGGETTSS ENSP00000303434/1-1042 ICDSLVNEKT IGSPPNEFYC SENTSVPNES NKILVNKDVP QKPGGETTPS ENSBTAP00000001785/1-1040 ACDSAVNERM VDS-PDEFCC TEDTSVPNDS SKMLVNKDVP QKPGGETTPS bmy_03461T0/1-926 ACYSAVNGRM VDS-PDEFRC TEDTSVPNDS SKMLVNKDVP QKPGGETTSS BACU013545/1-794 ACYSAVNERM ADS-PDEFRC TEDTSVPNDS SKMLVNKDVP RKPGGETTSS 751 800 ENSTTRP00000002731/1-946 VTDLLNYFLA PEILTGDNQY YCENCASLQN AEKTMQITEE PEYLILTLLR ENSP00000303434/1-1042 VTDLLNYFLA PEILTGDNQY YCENCASLQN AEKTMQITEE PEYLILTLLR ENSBTAP00000001785/1-1040 VTDLLNYFLA PEILTGDNQY YCENCASLQN AEKTMQITEE PEYLILTLLR bmy_03461T0/1-926 VTDLLNYFLA PEILTGDNQY YCENCASLQN AEKTMQITEE PEYLILTLLR BACU013545/1-794 VTDLLNYFLA PEILTGDNQY YCENCASLQ- ---------- ---------- 801 850 ENSTTRP00000002731/1-946 FSYDQKYHVR RKILDNVSLP LVLELPVKRT TSFSSLSESW SLDVDFTDIS ENSP00000303434/1-1042 FSYDQKYHVR RKILDNVSLP LVLELPVKRI TSFSSLSESW SVDVDFTDLS ENSBTAP00000001785/1-1040 FSYDQKYHVR RKILDNVSLP LVLELPVKR- TPFSSLSESW SLDVDFTDIS bmy_03461T0/1-926 FSYDQKYHVR RKILDNVSLP LVLELPVKRT TSFSSLSESW SLDVDFTDIS BACU013545/1-794 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000002731/1-946 ENLAKKLKPS GTEEACSPKL VPYLLSSVVV HSGVSSESGH YYSYARNITG ENSP00000303434/1-1042 ENLAKKLKPS GTDEASCTKL VPYLLSSVVV HSGISSESGH YYSYARNITS ENSBTAP00000001785/1-1040 ENLAKKLKPS GTEEACSPKL VPYLLSSVVV HSGVSSESGH YYSYARNVTG bmy_03461T0/1-926 ENLAKKLKPS GTEEACSPKL VPYLLSSVVV HSGVSSESGH YYSYARNITG BACU013545/1-794 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000002731/1-946 TESSYQMCHQ PETLTLASSQ SHLLGRDSPS AVIEQDLENK EMSKEWFLFN ENSP00000303434/1-1042 TDSSYQMYHQ SEALALASSQ SHLLGRDSPS AVFEQDLENK EMSKEWFLFN ENSBTAP00000001785/1-1040 TESSCQMCPQ PETLAFSSSR NHLLGRESPT VVIEQDLENK DMSKEWFLFN bmy_03461T0/1-926 TESSYQMCHQ PETLALASSQ SHLLGRDSPS AVTEQDLENK EMSKEWFLFN BACU013545/1-794 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000002731/1-946 DSRVTFTSFQ SVQKITSRFP KDTAYVLLYK KQNSANGLSG NNSTTGLWVN ENSP00000303434/1-1042 DSRVTFTSFQ SVQKITSRFP KDTAYVLLYK KQHSTNGLSG NNPTSGLWIN ENSBTAP00000001785/1-1040 DSRVTFTSFQ SVQKITSRFP KDTAYVLLYK RQNSTNGLNG NNSTTGLWVN bmy_03461T0/1-926 DSRVTFTSFQ SVQKITSRFP KDTAYVLLYK KQNSTNGLSG NNSTTGLWVN BACU013545/1-794 ---------- -IQKITSRFP KDTAYVLLYK KQNSTNGLSG NNSTPGLWVN 1001 1050 ENSTTRP00000002731/1-946 GDPPLQKELM DAITKDNKLY LQXXXXXXXX XXXXXXXXXX XXXXNGFDDN ENSP00000303434/1-1042 GDPPLQKELM DAITKDNKLY LQEQELNARA RALQAASASC SFRPNGFDDN ENSBTAP00000001785/1-1040 GDPPLQKELM DAITKDNKLY LQEQELNARA RALQAASASC SFRPNGFDDN bmy_03461T0/1-926 GDPPLQKELM DAITKDNKLY LQEQELNARA RALQAASASC SFRPNGFDDN BACU013545/1-794 GDPPLQKELM DAITKDNKLY LQEQELNARA RALQAASASC SFRPNGFDDN 1051 1100 ENSTTRP00000002731/1-946 DPPGSCGPT- GWGGGGFNTV GRLVF ENSP00000303434/1-1042 DPPGSCGPTG GGGGGGFNTV GRLVF ENSBTAP00000001785/1-1040 DPPGSCGPTG GGGGGGFNTV GRLVF bmy_03461T0/1-926 DPPGSCGPTG GGGGGGFNTV GRLVF BACU013545/1-794 DPPGSCGPTG GGGGGGFNTV GRLVF