KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:15:21 2014 Check: 00 .. Name: ENSTTRP00000003250/1-842 Len: 933 Check: 4325 Weight: 1.00 Name: ENSP00000369810/1-839 Len: 933 Check: 8942 Weight: 1.00 Name: bmy_07660T0/1-930 Len: 933 Check: 6427 Weight: 1.00 Name: BACU016880/1-839 Len: 933 Check: 307 Weight: 1.00 Name: ENSBTAP00000001744/1-839 Len: 933 Check: 2394 Weight: 1.00 // 1 50 ENSTTRP00000003250/1-842 MDCYTANWNP LGDS------ ---------A FYRKYELYSM DWDLKEELRD ENSP00000369810/1-839 MDCYTANWNP LGDS------ ---------A FYRKYELYSM DWDLKEELRD bmy_07660T0/1-930 MEALGA---P LGLSPSGCRV MTSLISVCHC VGRKYELYSM DWDLKEELRD BACU016880/1-839 MDCYTANWNP LGDS------ ---------A FYRKYELYSM DWDLKEELRD ENSBTAP00000001744/1-839 MDCYTANWNP LGDS------ ---------A FYRKYELYSM DWDLKEELRD 51 100 ENSTTRP00000003250/1-842 CLVAAAPYGG PIALLRNPGR KEKPASARPV LEIYSASGVP LASLLWKSGP ENSP00000369810/1-839 CLVAAAPYGG PIALLRNPWR KEKAASVRPV LDIYSASGMP LASLLWKSGP bmy_07660T0/1-930 CLVAAAPYGG PIALLRNPGR KEKPACARPV LEIYSASGVP LASLLWKSGP BACU016880/1-839 CLVAAAPYGG PIALLRNPGR KEKPASARPV LEIYSASGVP LASLLWKSGP ENSBTAP00000001744/1-839 CLVAAAPYGG PIALLRNPWR KEKPASARPV LEIYSASGVP LASLLWKSGP 101 150 ENSTTRP00000003250/1-842 VVSLGWSAEE ELLCVQEDGV VLVYGLHGDF RRHFSMGNEV LQNRVLDARI ENSP00000369810/1-839 VVSLGWSAEE ELLCVQEDGA VLVYGLHGDF RRHFSMGNEV LQNRVLDARI bmy_07660T0/1-930 MVSLGWSAEE ELLCVQEDGV VLVYGLHGDF RRHFSMGNEV LQNRVLDARI BACU016880/1-839 MVSLGWSAEE ELLCVQEDGV VLVYGLHGDF RRHFSMGNEV LQNQVLDARI ENSBTAP00000001744/1-839 VVSLGWSAEE ELLCVQEDGV VLVYGLHGDF RRHFSMGNEV LQNRVLDARI 151 200 ENSTTRP00000003250/1-842 FHTEFGSGVA ILTGAHRFTL SANVGDLKLR RMPEVPGLQS APSCWTTMCQ ENSP00000369810/1-839 FHTEFGSGVA ILTGAHRFTL SANVGDLKLR RMPEVPGLQS APSCWTVLCQ bmy_07660T0/1-930 FHTEFGSGVA ILTGAHRFTL SANVGDLKLR RMPEVPGLQS APSCWTTVCQ BACU016880/1-839 FHTEFGSGVA ILTGAHRFTL SANVGDLKLR RMPEVPGLQS APSCWTTVCQ ENSBTAP00000001744/1-839 FHTEFGSGVA ILTGAHRFTL SANVGDLKLR RMPEVPGLQS APSCWTTVCQ 201 250 ENSTTRP00000003250/1-842 DRVAHILLAV GPDLYLLDHA ACSAVTPPGL AAGVSSFLQM AVSFTYRHLA ENSP00000369810/1-839 DRVAHILLAV GPDLYLLDHA ACSAVTPPGL APGVSSFLQM AVSFTYRHLA bmy_07660T0/1-930 DRVAHILLAV GPDLYLLDHA ACSSVIPPGL APGVSSFLQM AVSFTYRHLA BACU016880/1-839 DRVAHILLAV GPDLYLLDHA ACSAVIPPGL APGVSSFLQM AVSFTYRHLA ENSBTAP00000001744/1-839 DRVAHILLAV GPDLYLLDHA ACSAVTPPGL APGVSSFLQM AVSFTYRHLA 251 300 ENSTTRP00000003250/1-842 LFTDTGYIWM GTASLKEKLC EFNCNIRAPP KQMVWCSRPR SKERAVVVAW ENSP00000369810/1-839 LFTDTGYIWM GTASLKEKLC EFNCNIRAPP KQMVWCSRPR SKERAVVVAW bmy_07660T0/1-930 LFTDTGYIWM GTASLKEKLC EFNCNIRAPP KQMVWCSRPR SKERAIVVAW BACU016880/1-839 LFTDTGYIWM GTASLKEKLC EFNCNIRAPP KQMVWCSRPR SKERAVVVAW ENSBTAP00000001744/1-839 LFTDTGYIWM GTASLKEKLC EFNCNIRAPP KQMVWCSRPR SKERAVVVAW 301 350 ENSTTRP00000003250/1-842 ERRLMVVGDA PEGIQ----- ---------- ---------- -------FVL ENSP00000369810/1-839 ERRLMVVGDA PESIQ----- ---------- ---------- -------FVL bmy_07660T0/1-930 ERRLMVVGDA PEGIQYPWRA AGGEEGEGGS PALPHLWVLL GTLTKLRFVL BACU016880/1-839 ERRLMVVGDA PEGIQ----- ---------- ---------- -------FVL ENSBTAP00000001744/1-839 ERRLMVVGDA PESIQ----- ---------- ---------- -------FVL 351 400 ENSTTRP00000003250/1-842 DEDSYLVPEL DGVRIFSRST HEFLHEVPVA SEEIFKIASM APGALLLEAQ ENSP00000369810/1-839 DEDSYLVPEL DGVRIFSRST HEFLHEVPAA SEEIFKIASM APGALLLEAQ bmy_07660T0/1-930 DEDSYLVPEL DGVRIFSRST HEFLHEVPVA SEEIFKIASM APGALLLEAQ BACU016880/1-839 DEDSYLVPEL DGVRIFSRST HEFLHEVPVA SEEIFKIASM APGALLLEAQ ENSBTAP00000001744/1-839 DEDSYLVPEL DGVRVFSRST HEFLHEVPVA SEEIFKIASM APGALLLEAQ 401 450 ENSTTRP00000003250/1-842 KEYEKESQKA DEYLREIQEL GQLPQAVQQC IEAAGHEHWP DMQKSLLRAA ENSP00000369810/1-839 KEYEKESQKA DEYLREIQEL GQLTQAVQQC IEAAGHEHQP DMQKSLLRAA bmy_07660T0/1-930 KEYEKESQKA DEYLREIQEL GQLPQAVQQC IEAAGHEHWP DMQKSLLRAA BACU016880/1-839 KEYEKESQKA DEYLREIQEL GQLPQAVQQC IEAAGHEHWP DMQKSLLRAA ENSBTAP00000001744/1-839 KEYEKESQKA DEYLREIQEL GQLPQAVQQC IEAAGHEHWP DMQKSLLRAA 451 500 ENSTTRP00000003250/1-842 SFGKCFLDRF PPDSFVRMCQ DLRVLNAIRD YHIGIPLTYS Q--------- ENSP00000369810/1-839 SFGKCFLDRF PPDSFVHMCQ DLRVLNAVRD YHIGIPLTYS Q--------- bmy_07660T0/1-930 SFGKCFLDRF PPDSFVRMCQ DLRVLNAIRD YHIGIPLTYS QYPQDLSPSW BACU016880/1-839 SFGKCFLDRF PPDSFVRMCQ DLRVLNAIRD YHIGIPLTYS Q--------- ENSBTAP00000001744/1-839 SFGKCFLDRF PPDSFVRMCQ DLRVLNAIRD YHIGIPLTYS Q--------- 501 550 ENSTTRP00000003250/1-842 --------YK QLTIQVLLDR LVLRRLYPLA IQICEYLRLP EVQGVSRILA ENSP00000369810/1-839 --------YK QLTIQVLLDR LVLRRLYPLA IQICEYLRLP EVQGVSRILA bmy_07660T0/1-930 ILNQIKYRYK QLTIQVLLDR LVLRRLYPLA IQICEYLRLP EVQGVSRILA BACU016880/1-839 --------YK QLTIQVLLDR LVLRRLYPLA IQICEYLRLP EVQGVSRILA ENSBTAP00000001744/1-839 --------YK QLTIQVLLDR LVLRRLYPLA IQICEYLRLP EVQGVSRILA 551 600 ENSTTRP00000003250/1-842 HWACYKVQQK DVSDEDVARA INQKLGDTPG VSYSDIAARA YGCGRTELAI ENSP00000369810/1-839 HWACYKVQQK DVSDEDVARA INQKLGDTPG VSYSDIAARA YGCGRTELAI bmy_07660T0/1-930 HWACYKVQQK DVSDEDVARA INQKLGDTPG VSYSDIAARA YGCGRTELAI BACU016880/1-839 HWACYKVQQK DVSDEDVARA INQKLGDTPG VSYSDIAARA YGCGRTELAI ENSBTAP00000001744/1-839 HWACYKVQQK DVSDEDVARA INQKLGDTPG VSYSDIAARA YGCGRTELAI 601 650 ENSTTRP00000003250/1-842 KLLEYEPRSG EQVPLLLKMK RSKLALSKAI ESGDTDLGEQ GL-------- ENSP00000369810/1-839 KLLEYEPRSG EQVPLLLKMK RSKLALSKAI ESGDTDL--- ---------- bmy_07660T0/1-930 KLLEYEPRSG EQVPLLLKMK RSKLALSKAI ESGDTDLGEQ GLGEDKAGDP BACU016880/1-839 KLLEYEPRSG EQVPLLLKMK RSKLALSKAI ESGDTDL--- ---------- ENSBTAP00000001744/1-839 KLLEYEPRSG EQVPLLLKMK RSKLALSKAI ESGDTDL--- ---------- 651 700 ENSTTRP00000003250/1-842 ---------- -------VFT VLLHLKNELN RGDFFMTLRN QPMALSLYRQ ENSP00000369810/1-839 ---------- -------VFT VLLHLKNELN RGDFFMTLRN QPMALSLYRQ bmy_07660T0/1-930 GLSKGLGWTC IPPYCPIVFT VLLHLKNELN RGDFFMTLRN QPMALSLYRQ BACU016880/1-839 ---------- -------VFT VLLHLKNELN RGDFFMTLRN QPMALSLYRQ ENSBTAP00000001744/1-839 ---------- -------VFT VLLHLKNELN RGDFFMTLRN QPMALSLYRQ 701 750 ENSTTRP00000003250/1-842 FCKHQELETL KDLYNQDDNH QELGSFHVRA SYAAEEXXXX XXXXXXXXXX ENSP00000369810/1-839 FCKHQELETL KDLYNQDDNH QELGSFHIRA SYAAEERIEG RVAALQTAAD bmy_07660T0/1-930 FCKHQELETL KDLYNQDDNH QELGSFHIRA SYAAEERIEG RVAALQTAAD BACU016880/1-839 FCKHQELETL KDLYNQDDNH QELGSFHIRA SYAAEERIEG RVAALQTAAD ENSBTAP00000001744/1-839 FCKHQELETL KDLYNQDDNH QELGSFHIRA SYAAEERIEG RVAALQTAAD 751 800 ENSTTRP00000003250/1-842 XXXXXXXXXX XXATEDQMR- LRLQRR-EDE LGVRFLDLSV HDTVTTLILS ENSP00000369810/1-839 AFYKAKNEFA AKATEDQMRL LRLQRRLEDE LGGQFLDLSL HDTVTTLILG bmy_07660T0/1-930 AFSKAKNEFA AKATEDQMRL LRLQRRLEDE LGGRFLDLSL HDTVTTLILS BACU016880/1-839 AFYKAKNEFA AKATEDQMRL LRLQRRLEDE LGGRFLDLSL HDTVTTLILS ENSBTAP00000001744/1-839 AFYKAKNEFA AKATEDQMRL LRLQRRLEDE LGGQFLDLSL HDTVTTLILS 801 850 ENSTTRP00000003250/1-842 GQNKRAEQLA RDFRIPDKRL WWLKLTALAD LEDWEELEKF SKSKKSPIGY ENSP00000369810/1-839 GHNKRAEQLA RDFRIPDKRL WWLKLTALAD LEDWEELEKF SKSKKSPIGY bmy_07660T0/1-930 GQNKRAEQLA RDFRIPDKRL WWLKLTALAD LEDWEELEKF SKSKKSPIGY BACU016880/1-839 GQNKRAEQLA RDFRIPDKRL WWLKLTALAD LEDWEELEKF SKSKKSPIGY ENSBTAP00000001744/1-839 GQNKRAEQLA RDFRIPDKRL WWLKLTALAD LEDWEELEKF SKSKKSPIGY 851 900 ENSTTRP00000003250/1-842 LPFVEICMKQ HNKYEAKKYA SRVGPEQKVK ALLLVGDVAQ AADVAIEHRN ENSP00000369810/1-839 LPFVEICMKQ HNKYEAKKYA SRVGPEQKVK ALLLVGDVAQ AADVAIEHRN bmy_07660T0/1-930 LPFVEICMKQ HNKYEAKKYA SRVGPEQKVK ALLLVGDVAQ AADVAIEHRN BACU016880/1-839 LPFVEICMKQ HNKYEAKKYA SRVGPEQKVK ALLLVGDVAQ AADVAIEHRN ENSBTAP00000001744/1-839 LPFVEICMKQ HNKYEAKKYA SRVGPEQKVK ALLLVGDVAQ AADVAIEHRN 901 950 ENSTTRP00000003250/1-842 EAEMSLVLSH CTGATDGATA DKIQRARAQA QKK ENSP00000369810/1-839 EAELSLVLSH CTGATDGATA DKIQRARAQA QKK bmy_07660T0/1-930 EAEMSLVFSH CTGATDGPTA DKIQRARAQA QKK BACU016880/1-839 EAEMSLVLSH CTGATDGSTA DKIQRARAQA QKK ENSBTAP00000001744/1-839 EAEMSLVLSH CTGSTDGATA DKIQRARAQA QKK