KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 16:14:41 2014 Check: 00 .. Name: bmy_14287T0/1-526 Len: 823 Check: 3768 Weight: 1.00 Name: ENSBTAP00000001541/1-540 Len: 823 Check: 9753 Weight: 1.00 Name: BACU004267/1-751 Len: 823 Check: 1170 Weight: 1.00 Name: ENSTTRP00000004722/1-716 Len: 823 Check: 1734 Weight: 1.00 // 1 50 bmy_14287T0/1-526 ----METLGD AL-------- ---------- ---------- ---------- ENSBTAP00000001541/1-540 MARAGSSSGD AAA-----GE RAGGAGRSEP WELSLEEVLK AYEQPINEEQ BACU004267/1-751 --MVRGCSGS TLP------- ---------- ---------- ---------- ENSTTRP00000004722/1-716 -GRAGGDDGA AMARAGSSSG NAAGAGRPEP WELSLEEVLK AYEQPINEEQ 51 100 bmy_14287T0/1-526 -------CAP G--GAVGGRG RPRVS----- ---GPGAAEA GPDCLFSPLA ENSBTAP00000001541/1-540 AWAVCFQCCR GLRGAPGGRR RIRDTADILL RRDGSVSARR ESGA-----A BACU004267/1-751 SWETGSEGST AM--SPSYRR ENRGP----- ---GSKAAKQ SPSG-----R ENSTTRP00000004722/1-716 AWAVCFQCCR GLRGAPGGRR RIRDTADILL RRDGSVSAQR EPGA-----A 101 150 bmy_14287T0/1-526 ESTAMVSPAS SEAQVVQSLG FAIYRALDWG LAEHEERELS PQLERLIDLM ENSBTAP00000001541/1-540 EPTTMVSPAS SEAQVVQSLG FAIYRALDWG LAEHEERELS PQLERLIDLM BACU004267/1-751 ESTAMVSPAS SEAQVVQSLG FAIYRALDWG LAEHEERELS PQLERLIDLM ENSTTRP00000004722/1-716 ESTAMVSPAS SEAQVVQSLG FAIYRALDWG LAEHVERELS PQLERLIDLM 151 200 bmy_14287T0/1-526 ANSDCDDDGG GGAADEGYGA PEEEEEAEGG PRVVRTFTQA MRLCAARLTE ENSBTAP00000001541/1-540 ANSDCDDDGG GGTADEGYGG PEEEEEAEGG PRTVRTFAQA MRLCAARLTE BACU004267/1-751 ANSDCDDDGG GGAADEGYGA PEEEEEAEGG PRAVRTFTQA MRLCAARLTE ENSTTRP00000004722/1-716 ANSDCDDDGG GGAADEGYGA PEEEEEAEGG PRAVRTFTQA MRLCAARLTE 201 250 bmy_14287T0/1-526 PRGAQTHYQA VCRALFVETL ELRAFLARVR EAKEMLQKLR EDEPQSEKPL ENSBTAP00000001541/1-540 PRGAQTHYQA VCRALFVETL ELRAFLARVR EARQMLQRFR EDEPQAEKPL BACU004267/1-751 PQGAQTHYQA VCRALFVETL ELRAFLARVR EAKEMLQKLR EDEPQSEKPL ENSTTRP00000004722/1-716 PRGAQTHYQA VCRALFVETL ELRAFLARVR EAKEMLQKLR EDEPQSEKPL 251 300 bmy_14287T0/1-526 MELDSLGRTD WARLWVQLMR ELRHGVKLRK VQEQEFSSLP TEFQLTPFEM ENSBTAP00000001541/1-540 VELDSLRRTD WARLWVQLMR ELRHGVKLKK VQEQEFNPLP TEFQLTPFEM BACU004267/1-751 MELDSLGRTD WARLWVQLMR ELRHGVKLKK VQEQEFNSLP TEFQLTPFEM ENSTTRP00000004722/1-716 MELDSLGRTD WARLWVQLMR ELRHGVKLKK VQEQEFNSLP TEFQLTPFEM 301 350 bmy_14287T0/1-526 LMQDIRARNY KLRKVMVNGD IPPRVKKDAH ELILDFIRSR PPLKQVSERR ENSBTAP00000001541/1-540 LMQDIRARNY KLRKVMVDGD IPPRVKKDAH ELILDFIRSR PPLKQVSERR BACU004267/1-751 LMQDIRARNY KLRKVMVNGD IPPRVKKDAH ELILDFIRSR PPLKQVSERR ENSTTRP00000004722/1-716 LMQDIRARNY KLRKVMVNGD IPPRVKKDAH ELILDFIRSR PPLKQVSERR 351 400 bmy_14287T0/1-526 LRPLPQKQRT LHEKILEEIK QERRLRPVEG RHWDGR---G FGSLPCILNA ENSBTAP00000001541/1-540 LRPLPQKQRT LHEKILEEIK QERRLRPVES RRWDGRGERG FGSLPCILNA BACU004267/1-751 LRPLPQKQRT LHEKILEEIK QERRLRPVEG RHWDGR---G FGSLPCILNA ENSTTRP00000004722/1-716 LRPLPQKQRT LHEKILEEIK QERRLRPVED RHWDGR---G FGSLPCILNA 401 450 bmy_14287T0/1-526 CSGDVKSSSC TNLSVTDAGS SAQRPRPRVL LKAPTLAEME EMNVSEE--- ENSBTAP00000001541/1-540 CSGDVKSTSC INLSITDVGS SAQRPRPRVL LKAPTLAEME EMNTSEEEES BACU004267/1-751 CSGDVKSSSC INLSVTDAGS SAQRPRPRVL LKAPTLAEME EMNISEEEES ENSTTRP00000004722/1-716 CSGDVKSTSC INLSITDAGS SAQRQRPRVL LKAPTLAEME EMNISEEEES 451 500 bmy_14287T0/1-526 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001541/1-540 PCGEGTLKRD RSFSEHDLVQ LRSEVTSGLQ PAPQPPGGLE LSRPRAGSMQ BACU004267/1-751 PCAEVTLRRD RSFSEHDLAQ LRSEVTSGL- ---QPPGGLE PARPRAGSVQ ENSTTRP00000004722/1-716 PCGEVTLRRD RSFSEHDLAQ LRSEVTSGL- ---QPPGGLE RARPRADSVQ 501 550 bmy_14287T0/1-526 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001541/1-540 SWRPSPLEPG SLPVSVQSQP DPSSLPRSDM SSVEDRQGAS AAPDASHLWL BACU004267/1-751 SWTPSAQEPG S--VSVQSRP DRSSPPRSDL GSV-DRPGAS EAPDANRRWL ENSTTRP00000004722/1-716 SWTPSAQEPG ---CSVQSRH DPGSPPRSDL GSVEDRPGAS E-------WL 551 600 bmy_14287T0/1-526 -FSHPVESLA LTVEEVMDVR RVLVKAEMEK FLQNKELFSS LKKGKVRSPG ENSBTAP00000001541/1-540 ---------- ---------- ---------- ---------- ---------- BACU004267/1-751 EFSHPVESLA LTVEEVMDVR RVLVKAEMEK FLQNKELFSS LKKGKICCC- ENSTTRP00000004722/1-716 EFSHPVESLA LTVEEVMDVR RVLVKAEMEK FLQNKELFSS LKKGKICCC- 601 650 bmy_14287T0/1-526 LGQVRAGLGL ASSGQNWALT RPFRTDLLLL PDQVPTVLLA THLSLLQESC ENSBTAP00000001541/1-540 ---------- ---------- ---------- ---------- ---------- BACU004267/1-751 ---CRTKFPL FS----WPPT CLFCKRAVCS SCNIKMKMPS KKFAHIPVYT ENSTTRP00000004722/1-716 ---CRTKFPL FS----WPST CLFCKRAVCS SCSIKMKMPS KKFAHIPVYT 651 700 bmy_14287T0/1-526 LQFLQHKGED ---------- ---------- ---------- ---------- ENSBTAP00000001541/1-540 ---------- ---------- ---------- ---------- ---------- BACU004267/1-751 LGFESPQRVS TAKAPPAQRR DAFQCVPALG DVPVVGSRHR HPDAGRGPVC ENSTTRP00000004722/1-716 LGFESPQRVS TAKVTLAQRR DAFQ------ ---------- ---------- 701 750 bmy_14287T0/1-526 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000001541/1-540 ---------- ---------- ---------- ---------- ---------- BACU004267/1-751 WGGLGLRGQS PGPKFRPRKS CCGMDFALPA VGAGGCGDSG GPLTAPSCPR ENSTTRP00000004722/1-716 ---------- ---------- ---------- ---------- ---------- 751 800 bmy_14287T0/1-526 ---------- -----HLGSE RGLASQVSCG LTGPVRGWAE ALLSPVG--- ENSBTAP00000001541/1-540 ---------- ---------- ---------- ---------- ---------- BACU004267/1-751 PLQGPHWRSV EEEFPHIYTH GCVLKDVCSD CTGFVADVVR SSRRSVDALN ENSTTRP00000004722/1-716 PLQGPHWRSV EEEFPHIYTH GCVLKDVCSD CTGFVADVVR SSRRSVDALN 801 850 bmy_14287T0/1-526 ---------- ---------- --- ENSBTAP00000001541/1-540 ---------- ---------- --- BACU004267/1-751 TTPRRARHTQ SLYISNTWTL DLK ENSTTRP00000004722/1-716 TTPRRARQTQ SLYVPNTWTL DLK