KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:58 2014 Check: 00 .. Name: ENSTTRP00000007527/1-642 Len: 718 Check: 3314 Weight: 1.00 Name: ENSBTAP00000001344/1-642 Len: 718 Check: 6833 Weight: 1.00 Name: ENSP00000381104/1-642 Len: 718 Check: 7699 Weight: 1.00 Name: bmy_00528T0/1-584 Len: 718 Check: 6522 Weight: 1.00 Name: BACU015580/1-694 Len: 718 Check: 8402 Weight: 1.00 // 1 50 ENSTTRP00000007527/1-642 -MAAAMDWLP WSLLLLSLTC DTGAFYVPGV APINFHQNDP VEIKAVKLTS ENSBTAP00000001344/1-642 -MAAAMDWLP WSLLLFSLMC DTGAFYVPGV APINFHQNDP VEIKAVKLTS ENSP00000381104/1-642 -MATAMDWLP WSLLLFSLMC ETSAFYVPGV APINFHQNDP VEIKAVKLTS bmy_00528T0/1-584 ---------- ---------- ---------- ---------- ---------- BACU015580/1-694 MAAVMQDWLP WSLLLLSLTC DTGAFYVPGV APINFHQNDP VEIKAVKLTS 51 100 ENSTTRP00000007527/1-642 SRTQLPYEYY SLPFCQPSKI TYKAENLGEV LRGDRIVNTP FQVLMNSEKK ENSBTAP00000001344/1-642 SRTQLPYEYY SLPFCQPSKI TYKAENLGEV LRGDRIVNTP FQVLMNSEKK ENSP00000381104/1-642 SRTQLPYEYY SLPFCQPSKI TYKAENLGEV LRGDRIVNTP FQVLMNSEKK bmy_00528T0/1-584 ---------- ---------- ---------- ---------- ----MNSEKK BACU015580/1-694 SRTQLPYEYY SLPFCQPSKI TYKAENLGEV LRGDRIVNTP FQVLMNSEKK 101 150 ENSTTRP00000007527/1-642 CEVLCSQSNK PVTLTVEQSR LVAERISEDY YVHLIADNLP VATRLELYSS ENSBTAP00000001344/1-642 CEVLCGQSNK PVTLTVEQSR LVAERISEDY YVHLIADNLP VATRLELYSN ENSP00000381104/1-642 CEVLCSQSNK PVTLTVEQSR LVAERITEDY YVHLIADNLP VATRLELYSN bmy_00528T0/1-584 CEVLCSQSNK PVILTVEQSR LVAERISEDY YVHLIADNLP VATRLELYSN BACU015580/1-694 CEVLCSQSNK PVILTVEQSR LVAERISEDY YVHLIADNLP VATRLELYSN 151 200 ENSTTRP00000007527/1-642 RDGDDKKKEK DVQFEHGYRL GFTDVNKIYL HNHLSFILYY HREDLEEDQE ENSBTAP00000001344/1-642 RDGDDKKKEK DVQFEHGYRL GFTDVNKIYL HNHLSFILYY HREDLEEDRE ENSP00000381104/1-642 RDSDDKKKEK DVQFEHGYRL GFTDVNKIYL HNHLSFILYY HREDMEEDQE bmy_00528T0/1-584 RDGDDKKKEK DVQFEHGYRL GFTDVNKIYL HNHLSFILYY HREDLEEDQE BACU015580/1-694 RDSDDKKKEK DVQFEHGYRL GFTDVNKIYL HNHLSFILYY HREDLEEDQE 201 250 ENSTTRP00000007527/1-642 HTYRVVRFEV IPQSIRLEDL KTDEKSSCTL PEGTNSSPQE IDPTKANQLY ENSBTAP00000001344/1-642 HTYRVVRFEV IPQSVRLEDL KADEKSSCTL PEGTNSSPQE IDPTKENQLY ENSP00000381104/1-642 HTYRVVRFEV IPQSIRLEDL KADEKSSCTL PEGTNSSPQE IDPTKENQLY bmy_00528T0/1-584 HTYRVVRFEV IPQSIRLEDL KTDEKSSCTL PEGTNSSPQE IDPTKENRLY BACU015580/1-694 HTYRVVRFEV IPQSIRLEDL KTDEKSSCTL PEGTNSSPQE IDPTKENQLY 251 300 ENSTTRP00000007527/1-642 FTYSVHWEES DIKWASRWDT YLTMSDVQIH WFSIINSVVV VFFL------ ENSBTAP00000001344/1-642 FTYSVHWEES DIKWASRWDT YLTMSDVQIH WFSIINSVVV VFFL------ ENSP00000381104/1-642 FTYSVHWEES DIKWASRWDT YLTMSDVQIH WFSIINSVVV VFFL------ bmy_00528T0/1-584 FTYSVHWEES DIKWASRWDT YLTMSDVQIH WFSIINSVVV VFFLSAGVEL BACU015580/1-694 FTYSVHWEES DIKWASRWDT YLTMSDVQIH WFSIINSVVV VFFLSAGVEL 301 350 ENSTTRP00000007527/1-642 ---------- ---------- ---------- ---------- -----SGILS ENSBTAP00000001344/1-642 ---------- ---------- ---------- ---------- -----SGILS ENSP00000381104/1-642 ---------- ---------- ---------- ---------- -----SGILS bmy_00528T0/1-584 CPGEDLGRLH SQFPLEEATR AQRASSTEDS FGHADDSSSS PPLFVSGILS BACU015580/1-694 CPGEDLGRLH SQFPLEEATR AQRASSTEDS FGRADDSSSS PPLFVSGILS 351 400 ENSTTRP00000007527/1-642 MIIIRTLRKD IANYNKEDDI XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001344/1-642 MIIIRTLRKD IANYNKEDDI EDTMEESGWK LVHGDVFRPP QYPMILSSLL ENSP00000381104/1-642 MIIIRTLRKD IANYNKEDDI EDTMEESGWK LVHGDVFRPP QYPMILSSLL bmy_00528T0/1-584 MIIIRTLRKD IANYNKEDDI EDTMEESGWK LVHGDVFRPP QYPMILSSLL BACU015580/1-694 MIIIRTLRKD IANYNKEDDI EDTMEESGWK LVHGDVFRPP QYPMILSSLL 401 450 ENSTTRP00000007527/1-642 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000001344/1-642 GSGIQLFCMI LIVIFVAMLG MLSPSSRGAL MTTACFLFMF MGVFGGFSAG ENSP00000381104/1-642 GSGIQLFCMI LIVIFVAMLG MLSPSSRGAL MTTACFLFMF MGVFGGFSAG bmy_00528T0/1-584 GSGIQLFCMI LIVIFVAMLG MLSPSSRGAL MTTACFLFMF MGVFGGFSAG BACU015580/1-694 GSGIQLFCMI LIVIFVAMLG MLSPSSRGAL MTTACFLFMF MGVFGGFSAG 451 500 ENSTTRP00000007527/1-642 XXXXXXXXXX XXXGAFC--- ---------- ---------- -TATLYPGVV ENSBTAP00000001344/1-642 RLYRTLKGHR WKKGAFC--- ---------- ---------- -TATLYPGVV ENSP00000381104/1-642 RLYRTLKGHR WKKGAFC--- ---------- ---------- -TATLYPGVV bmy_00528T0/1-584 RLYRTLKGHR WKKGAFCILT XPWCGALPRS TAPQPGLSCF QTATLYPGVV BACU015580/1-694 RLYRTLKGHR WKKGAFC--- ---------- ---------- -TATLYPGVV 501 550 ENSTTRP00000007527/1-642 FGICFVLNCF IWGKHSSGAV PFPTMVALLC MWFGISLPLV YLGYYFGFRK ENSBTAP00000001344/1-642 FGICFVLNCF IWGKHSSGAV PFPTMVALLC MWFGISLPLV YLGYYFGFRK ENSP00000381104/1-642 FGICFVLNCF IWGKHSSGAV PFPTMVALLC MWFGISLPLV YLGYYFGFRK bmy_00528T0/1-584 FGICFVLNCF IWGKHSSGAV PFPTMVALLC MWFGISLPLV YLGYYFGFRK BACU015580/1-694 FGICFVLNCF IWGKHSSGAV PFPTMVALLC MWFGISLPLV YLGYYFGFRK 551 600 ENSTTRP00000007527/1-642 QPYDNPVRTN QIPRQIPEQR WYMNRFVGIL MVGILPFGAM FIELFFIFSA ENSBTAP00000001344/1-642 QPYDNPVRTN QIPRQIPEQR WYMNRFVGIL MAGILPFGAM FIELFFIFSA ENSP00000381104/1-642 QPYDNPVRTN QIPRQIPEQR WYMNRFVGIL MAGILPFGAM FIELFFIFSA bmy_00528T0/1-584 QPYDNPVRTN QIPRQIPEQR WYMNRFVGIL MAGILPFGAM FIELFFIFS- BACU015580/1-694 QPYDNPVRTN QIPRQIPEQR WYMNRFVGIL MAGILPFGAM FIELFFIFSA 601 650 ENSTTRP00000007527/1-642 IWENQFYYLF GFLFLVFIIL VVSCSQISIV MVYFQLCAED YRWWWRNFLV ENSBTAP00000001344/1-642 IWENQFYYLF GFLFLVFIIL VVSCSQISIV MVYFQLCAED YRWWWRNFLV ENSP00000381104/1-642 IWENQFYYLF GFLFLVFIIL VVSCSQISIV MVYFQLCAED YRWWWRNFLV bmy_00528T0/1-584 ---------- ---------- ---------- ---------D YRWWWRNFLV BACU015580/1-694 IWENQFYYLF GFLFLVFIIL VVSCSQISIV MVYFQLCAED YRWWWRNFLV 651 700 ENSTTRP00000007527/1-642 SGGSAFYVLV YAIFYFVNKL DIVEFIPSLL YFGYTALMVL SFWLLTGTIG ENSBTAP00000001344/1-642 SGGSAFYVLV YAIFYFVNKL DIVEFIPSLL YFGYTALMVL SFWLLTGTIG ENSP00000381104/1-642 SGGSAFYVLV YAIFYFVNKL DIVEFIPSLL YFGYTALMVL SFWLLTGTIG bmy_00528T0/1-584 SGGSAFYVLV YAIFYFVNKL DIVEFIPSLL YFGYTALMVL SFWLLTGTIG BACU015580/1-694 SGGSAFYVLV YAIFYFVNKL DIVEFIPSLL YFGYTALMVL SFWLLTGTIG 701 750 ENSTTRP00000007527/1-642 FYAAYMFVRK IYAAVKID ENSBTAP00000001344/1-642 FYAAYMFVRK IYAAVKID ENSP00000381104/1-642 FYAAYMFVRK IYAAVKID bmy_00528T0/1-584 FYAAYMFVRK IYAAVKID BACU015580/1-694 FYAAYMFVRK IYAAVKID