KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:13:24 2014 Check: 00 .. Name: ENSBTAP00000001144/1-358 Len: 364 Check: 6101 Weight: 1.00 Name: ENSP00000430271/1-361 Len: 364 Check: 636 Weight: 1.00 Name: ENSTTRP00000006539/1-355 Len: 364 Check: 7440 Weight: 1.00 Name: bmy_03438T0/1-357 Len: 364 Check: 6847 Weight: 1.00 Name: BACU003916/1-357 Len: 364 Check: 5440 Weight: 1.00 // 1 50 ENSBTAP00000001144/1-358 MHCSCLAKGL PAISAAGNAW IPGLAFPDWA YKAESSPGSR QIQLWHFILE ENSP00000430271/1-361 MHCSCLAEGI PAN-PGN--W ISGLAFPDWA YKAESSPGSR QIQLWHFILE ENSTTRP00000006539/1-355 MHCGCLDEGI PAI-PVT--W ISGLAFPDWA CKAESSPGSR QIQLWHFILE bmy_03438T0/1-357 MHRSCLAEGI PAI-ASRNFW ISGLAFPDWA YKAESSPGSR QIQLWHFILE BACU003916/1-357 MHCSCLAEGI PAI-ASRNLW ISGLAFPDWA YKAESSPGSR QIQLWHFILE 51 100 ENSBTAP00000001144/1-358 LLQKEEFHHV IAWQQGEYGE FVIKDPDEVA RLWGRRKCKP QMNYDKLSRA ENSP00000430271/1-361 LLQKEEFRHV IAWQQGEYGE FVIKDPDEVA RLWGRRKCKP QMNYDKLSRA ENSTTRP00000006539/1-355 LLQKEEFRHV IAWQQGEYGE FVIKDPDEVA RLWGRRKCKP QMNYDKLSRA bmy_03438T0/1-357 LLQKEEFRHV IAWQQGEYGE FVIKDPDEVA RLWGRRKCKP QMNYDKLSRA BACU003916/1-357 LLQKEEFRHV IAWQQGEYGE FVIKDPDEVA RLWGRRKCKP QMNYDKLSRA 101 150 ENSBTAP00000001144/1-358 LRYYYNKRIL HKTKGKRFTY KFNFSKLIVV NYPLWEIRTA PSPCLLLGAP ENSP00000430271/1-361 LRYYYNKRIL HKTKGKRFTY KFNFSKLIVV NYPLWEVRAP PSPHLLLGAP ENSTTRP00000006539/1-355 LRYYYNKRIL HKTKGKRFTY KFNFSKLIVV NYPLWESWAP PSLHLLLGAP bmy_03438T0/1-357 LRYYYNKRIL HKTKGKRFTY KFNFSKLIVV NYPLWEVRAP PSLHLLLGAP BACU003916/1-357 LRYYYNKRIL HKTKGKRFTY KFNFSKLIVV NYPLWEVRAP PSLHLLLGAP 151 200 ENSBTAP00000001144/1-358 ALFQPALLPM GVKSELLHSM LFTHRAMAEQ LAGQWTPQGP PEASGNKKGS ENSP00000430271/1-361 ALCRPALVPV GVQSELLHSM LFAHQAMVEQ LTGQQTPRGP PETSGDKKGS ENSTTRP00000006539/1-355 ALFRPALVPM GVQSELLHSR LSTHWARAEQ LAGQRTPQGP PEASRDKKGS bmy_03438T0/1-357 ALFRPALVPM GVQSELLHSM LFTHRAXAEQ LAGQRTPQGP PEASGDKKGS BACU003916/1-357 ALFRPALVPM GVQSELLHSM LFSHRAMAEQ LAGQRTPQGP PEASGDKKGS 201 250 ENSBTAP00000001144/1-358 SSSVHRLGSA PVPCRPGPCC HLGSPLNDLP SFASFTPPLP FAVPSNWPRL ENSP00000430271/1-361 SSSVYRLGSA PGPCRLGLCC HLGSVQGELP GVASFTPPLP PPLPSNWTCL ENSTTRP00000006539/1-355 GSLVHRLGSA PAHCRLSPCC HLGSPQDELP SFASFTPPLP PPVPSDWPHL bmy_03438T0/1-357 GSIVHRLGSA PAPCRLSPCC HLGSPQDEPP SFASFTPPLP PPVPSDWPHL BACU003916/1-357 GSIVHRLGSA PAPCRLSPCC HLGSPHDELP SFPSFTPPLP PPVPSDWPHL 251 300 ENSBTAP00000001144/1-358 SAPFLPPVAP ELPFPGSSTP GTLLPGSICA PAAQHFPELP LLARLAQGAE ENSP00000430271/1-361 SGPFLPPLPS EQQLPGAFKP DILLPGPRSL PGAWHFPGLP LLAGLGQGAG ENSTTRP00000006539/1-355 SGPFLPPVPA GQHFPGSSMP DTLLPGPRGS PGAQHIPGLP LLAGLAQGAG bmy_03438T0/1-357 SGPFLPPVPA GQHFPGSSMP DTLLPGPAGA PLPRHFPGLP LLAGLAQGAG BACU003916/1-357 SGPFLPPVPA GQHFPGSSMP DTLLPGPAGA PGARHFPGLP LLAGLAQGAG 301 350 ENSBTAP00000001144/1-358 ERLRLWSLRP EGLEVKPETT S------APR EGFSSERQET STGEEGPASP ENSP00000430271/1-361 ERLWLLSLRP EGLEVKPAPM MEAKGGLDPR EVFCPETRRL KTGEESLTSP ENSTTRP00000006539/1-355 ERLWLPSPRP KGLEVKPDPT M------DPR EGFSSEKQEP YIVDESPVSP bmy_03438T0/1-357 ERLWLSCLRP EGLEVKPDPT M------DPR EGFSSERQEP YIVEESPVSP BACU003916/1-357 ERLWLSRLRP EGLEVKPDPT M------DPR EGFSSERQEP YIVEESPVSP 351 400 ENSBTAP00000001144/1-358 SLASFKAVWP LDPP ENSP00000430271/1-361 NLENLKAVWP LDPP ENSTTRP00000006539/1-355 NLENFKAVWP LDPP bmy_03438T0/1-357 NLENFKAVWP LDPP BACU003916/1-357 NLENFKAVWP LDPP