KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:12:58 2014 Check: 00 .. Name: bmy_15842T0/1-740 Len: 749 Check: 9897 Weight: 1.00 Name: BACU002618/1-528 Len: 749 Check: 7280 Weight: 1.00 Name: ENSTTRP00000006411/1-461 Len: 749 Check: 9647 Weight: 1.00 Name: ENSP00000262971/1-510 Len: 749 Check: 1382 Weight: 1.00 Name: ENSBTAP00000001000/1-513 Len: 749 Check: 3341 Weight: 1.00 // 1 50 bmy_15842T0/1-740 MAQQKIGIRN ASPASAAGSP RNRSPSGKGT PELVLRQPFS RFLQEELLGW BACU002618/1-528 ---------- ----MRVHEA APDGPNLVEG -NMVMSFRVS DL--QMLLGF ENSTTRP00000006411/1-461 ---------- ---------- ---------- ---------S DL--QMLLGF ENSP00000262971/1-510 ---------- ---------- --MAAELVEA KNMVMSFRVS DL--QMLLGF ENSBTAP00000001000/1-513 ---------- ---------- --MAAELVEA KNMVMSFRVS DL--QMLLGF 51 100 bmy_15842T0/1-740 RVGRPLPCLP GDSVGWGSIF DTPPPQPWRP SSDVVRPPPP ISNC-PGLFG BACU002618/1-528 -VGRSKSGLK HELV------ --------TR ALQLVQ---- -FDCSPELFK ENSTTRP00000006411/1-461 -VGRSKSGLK HELV------ --------TR ALQLVQ---- -FDCSPELFK ENSP00000262971/1-510 -VGRSKSGLK HELV------ --------TR ALQLVQ---- -FDCSPELFK ENSBTAP00000001000/1-513 -VGRSKSGLK HELV------ --------TR ALQLVQ---- -FDCSPELFK 101 150 bmy_15842T0/1-740 QVWAHLQVAY VHPSPPIKRP FSRAPTGTPE GPALPPQRAG TGGSSVAVHC BACU002618/1-528 KIKELYETRY AKKSS----- ---EPVPQPH RPLDP----- -----LTMHS ENSTTRP00000006411/1-461 KIKELYETRY AKKSS----- ---EPVPQPH RPLDP----- -----LTMHS ENSP00000262971/1-510 KIKELYETRY AKKNS----- ---EPAPQPH RPLDP----- -----LTMHS ENSBTAP00000001000/1-513 KIKELYETRY AKKSS----- ---EPVPQPH RPLDP----- -----LTMHS 151 200 bmy_15842T0/1-740 RFTSVSPWPS RECRRRDLVQ LVPIPSGSAV LSPCGAWAEC CMVGHMAHQM BACU002618/1-528 TYERASSVPR T--------- ---------- ---------- ---------- ENSTTRP00000006411/1-461 TYDRASSVPR T--------- ---------- ---------- ---------- ENSP00000262971/1-510 TYDRAGAVPR T--------- ---------- ---------- ---------- ENSBTAP00000001000/1-513 TYERASSVPR T--------- ---------- ---------- ---------- 201 250 bmy_15842T0/1-740 PGTALGVGDR VVAGVSQTDL EKVAGPRARG LVCCILPAQQ SSSAPSEQFS BACU002618/1-528 PLTGPNIDYP VLYGKYLNGL GRLPAKTLK- ------PEVR LVKLPFFNML ENSTTRP00000006411/1-461 PLTGPNIDYP VLYGKYLNGL GRLPAKTLK- ------PEVR LVKLPFFNML ENSP00000262971/1-510 PLAGPNIDYP VLYGKYLNGL GRLPAKTLK- ------PEVR LVKLPFFNML ENSBTAP00000001000/1-513 PLTGPNIDYP VLYGKYLNGL GRLPAKTLK- ------PEVR LVKLPFFNML 251 300 bmy_15842T0/1-740 SEEGQACRND RSRHPRQGTD VTLTPNLSPV PQNNEKLQES PCIFALTPRQ BACU002618/1-528 DE-------- ---------- -LLKPT-ELV PQNNEKLQES PCIFALTPRQ ENSTTRP00000006411/1-461 DE-------- ---------- -LLKPT-ELX XXXXXXXXXX XXXXXXXXXX ENSP00000262971/1-510 DE-------- ---------- -LLKPT-ELV PQNNEKLQES PCIFALTPRQ ENSBTAP00000001000/1-513 DE-------- ---------- -LLKPT-ELV PQNNEKLQES PCIFALTPRQ 301 350 bmy_15842T0/1-740 VELIRNSSSG LVRLAGPPGE GSEAAAGRSP AIDPPLLPPH RELQPGVKAV BACU002618/1-528 VELIRNS--- ---------- ---------- ---------- RCAVPTRCPP ENSTTRP00000006411/1-461 XXXXXXX--- ---------- ---------- ---------- XXXXXXXXXX ENSP00000262971/1-510 VELIRNS--- ---------- ---------- ---------- RELQPGVKAV ENSBTAP00000001000/1-513 VELIRNS--- ---------- ---------- ---------- RELQPGVKAV 351 400 bmy_15842T0/1-740 QVVLRPQDPL RHTHTHPLSG LVRGYASMQP HSGQIRVLSP PPSPPICPPR BACU002618/1-528 LWQP------ ---------- ---------- ---------- ---------- ENSTTRP00000006411/1-461 XXXX------ ---------- ---------- ---------- ---------- ENSP00000262971/1-510 QVVL------ ---------- ---------- ---------- ---------- ENSBTAP00000001000/1-513 QVVL------ ---------- ---------- ---------- ---------- 401 450 bmy_15842T0/1-740 PSQRALPCPR CPWPYGPWCP CRICYSDTSS P-------QE DQYPPNIAVK BACU002618/1-528 ---------- ---------- -RAAFARPAA DPGLGVAGKG GPHPVLRARA ENSTTRP00000006411/1-461 ---------- ---------- -XICYSDTSS P-------QE DQYPPNIAVK ENSP00000262971/1-510 ---------- ---------- -RICYSDTSC P-------QE DQYPPNIAVK ENSBTAP00000001000/1-513 ---------- ---------- -RICYSDTSS P-------QE DQYPPNIAVK 451 500 bmy_15842T0/1-740 VNHSYCSVP- GYYPSNKPGV EPKRPCRPIN LTHLMYLSSA TNRITVTWGN BACU002618/1-528 LSPPLTHSPE GYYPSNKPGV EPKRPCRPIN LTHLMYLSSA TNRITVTWGN ENSTTRP00000006411/1-461 VNHSYCSVP- GYYPSNKPGV EPKRPCRPIN LTHLMYLSSA TNRITVTWGN ENSP00000262971/1-510 VNHSYCSVP- GYYPSNKPGV EPKRPCRPIN LTHLMYLSSA TNRITVTWGN ENSBTAP00000001000/1-513 VNHSYCSVP- GYYPSNKPGV EPKRPCRPIN LTHLMYLSSA TNRITVTWGN 501 550 bmy_15842T0/1-740 YGKSYSVALY LVRQLTSSEL LQRLKTIGVK HPELCKALVK EKLRLDPDSE BACU002618/1-528 YGKSYSVALY LVRQLTSSEL LQRLKTIGVK HPELCKALVK EKLRLDPDSE ENSTTRP00000006411/1-461 YGKSYSVALY LVRQLTSSEL LQRLKTIGVK HPELCKALVK EKLRLDPDSE ENSP00000262971/1-510 YGKSYSVALY LVRQLTSSEL LQRLKTIGVK HPELCKALVK EKLRLDPDSE ENSBTAP00000001000/1-513 YGKSYSVALY LVRQLTSSEL LQRLKTIGVK HPELCKALVK EKLRLDPDSE 551 600 bmy_15842T0/1-740 IATTGVRVSL ICPLVKMRLS VPCRAETCAH LQCFDAVFYL QMNEKKPTWM BACU002618/1-528 IATTGVRVSL ICPLVKMRLS VPCRAETCAH LQCFDAVFYL QMNEKKPTWM ENSTTRP00000006411/1-461 IATTGVRVSL ICPLVKMRLS VPCRAETCAH LQCFDAVFYL QMNEKKPTWM ENSP00000262971/1-510 IATTGVRVSL ICPLVKMRLS VPCRAETCAH LQCFDAVFYL QMNEKKPTWM ENSBTAP00000001000/1-513 IATTGVRVSL ICPLVKMRLS VPCRAETCAH LQCFDAVFYL QMNEKKPTWM 601 650 bmy_15842T0/1-740 CPVCDKPAPY DQLIIDGLLS KILSECEDAD EIEYLVDGSW CPIRAEKERS BACU002618/1-528 CPVCDKPAPY DQLIIDGLLS KILSECEDAD EIEYLVDGSW CPIRAEKERS ENSTTRP00000006411/1-461 CPVCDKPAPY DQLIIDGLLS KILSECEDAD EIEYLVDGSW CPIRAEKERS ENSP00000262971/1-510 CPVCDKPAPY DQLIIDGLLS KILSECEDAD EIEYLVDGSW CPIRAEKERS ENSBTAP00000001000/1-513 CPVCDKPAPY DQLIIDGLLS KILSECEDAD EIEYLVDGSW CPIRAEKERS 651 700 bmy_15842T0/1-740 CSPQCPILVL GTSDANGLPS TPNVNSGGGG ALGGSGGGGG TAGGVENGKP BACU002618/1-528 CSPQCPILVL GTSDANGLPS TPNVNGGGGG ALGGSGGGGG TAGGVENGKP ENSTTRP00000006411/1-461 CSPQCPILVL GTSDANGLPT TPNVNGGGGS ALGGAG-GGG RAGSV-NGKP ENSP00000262971/1-510 CSPQGAILVL GPSDANGLLP APSVN--GSG ALGSTG-GGG PVGSMENGKP ENSBTAP00000001000/1-513 CSPQCPILVL GTSDANGLLS TPSVNGGGGS VLGGAGSGGG PVGSVENGKP 701 750 bmy_15842T0/1-740 GADVVDLTLD SSSSSEEEED EEDEDEDEDE EGPRPKRRCP FQKGLVSAC BACU002618/1-528 GADVVDLTLD SSSSSEEEED EDEEDEDEDE EGPRPKRRCP FQKGLVSAC ENSTTRP00000006411/1-461 GADVVDLTLD SSSSSE---- ---------- ---------- --------- ENSP00000262971/1-510 GADVVDLTLD SSSSSEDEEE EEEEEEDEDE EGPRPKRRCP FQKGLVPAC ENSBTAP00000001000/1-513 GADVVDLTLD SSSSSEEEEE EEEDEEDEDE EGPRPKRRCP FQKGLVSAC