KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:11:09 2014 Check: 00 .. Name: ENSTTRP00000011805/1-861 Len: 1115 Check: 7304 Weight: 1.00 Name: BACU015547/1-864 Len: 1115 Check: 5856 Weight: 1.00 Name: bmy_00566T0/1-712 Len: 1115 Check: 8654 Weight: 1.00 Name: ENSP00000262650/1-903 Len: 1115 Check: 6969 Weight: 1.00 Name: ENSBTAP00000000397/1-862 Len: 1115 Check: 5218 Weight: 1.00 // 1 50 ENSTTRP00000011805/1-861 --------MS DSGSQLGSMG SLTMKSQLQI TVISAKLKEN KKNWFGPS-Y BACU015547/1-864 MVCRPVGVMS DSGSQLGSMG SLTMKSQLQI TVISAKLKEN KKNWFGPSPY bmy_00566T0/1-712 ---------- ---------- ---------- ---------- ---------- ENSP00000262650/1-903 --------MS DSGSQLGSMG SLTMKSQLQI TVISAKLKEN KKNWFGPSPY ENSBTAP00000000397/1-862 --------MS DSGSQLGSMG SLTMKSQLQI TVISAKLKEN KKNWFGPSPY 51 100 ENSTTRP00000011805/1-861 VEVTVDGQSK KTEKCNNTNS PKWKQPLTVI VTPVSKLHFR VWSHQTLKSD BACU015547/1-864 VEVTVDGQSK KTEKCNNTNS PKWKQPLTVI VTPVSKLHFR VWSHQTLKSD bmy_00566T0/1-712 ---------- ---------- ---------- ---------- ---------- ENSP00000262650/1-903 VEVTVDGQSK KTEKCNNTNS PKWKQPLTVI VTPVSKLHFR VWSHQTLKSD ENSBTAP00000000397/1-862 VEVTVDGQSK KTEKCNNTNS PKWKQPLTVI VTPVSKLHFR VWSHQTLKSD 101 150 ENSTTRP00000011805/1-861 VLLGTAALDI YETLKSNNMK LEEVVVTLQL VGDKEPTETI GDLSVCLDGL BACU015547/1-864 VLLGTAALDI YETLKSNNMK LEEVVVTLQL VGDKEPTETI GDLSVCLDGL bmy_00566T0/1-712 ---------- ---------- -EEVVVTLQL VGDKEPTETI GDLSVCLDGL ENSP00000262650/1-903 VLLGTAALDI YETLKSNNMK LEEVVVTLQL GGDKEPTETI GDLSICLDGL ENSBTAP00000000397/1-862 VLLGTAGLDI YETLKSNNMK LEEVVVTLQL VGDKEPAETI GDLSVCLDGL 151 200 ENSTTRP00000011805/1-861 QLESEVVANG ETTCSEX--- ---------- ---------- ---------- BACU015547/1-864 QLESEVVANG ETTCSES--- ---------- ---------- ---------- bmy_00566T0/1-712 QLESEVVANG ETTCSES--- ---------- ---------- ---------- ENSP00000262650/1-903 QLESEVVTNG ETTCSENGVS LCLPRLECNS AISAHCNLCL PGLSDSPISA ENSBTAP00000000397/1-862 QLESEVVANG ETACSES--- ---------- ---------- ---------- 201 250 ENSTTRP00000011805/1-861 --------XX XXXXXXXXXX XXXASTNGSD HPEDAGSGEN RRVNGNNSPS BACU015547/1-864 --------AS QNDDGSRPKD ETRVAM---- ---------- ---------- bmy_00566T0/1-712 --------AS QNDDGSRPKD ETRVNTNGSD HPEDAGSGEN RRVNGNNSPS ENSP00000262650/1-903 SRVAGFTGAS QNDDGSRSKD ETRVSTNGSD DPEDAGAGEN RRVSGNNSPS ENSBTAP00000000397/1-862 --------AS HNDDGSRPKD ETRANASGSD DPEDAGSGEN RRINGNNSPS 251 300 ENSTTRP00000011805/1-861 LSNGGFKPSR PPRPSRPPPP TPRRPASVNG SPSATSESDG SSTGSLPPTN BACU015547/1-864 ---------- ---------- ---------- ---------- ---------- bmy_00566T0/1-712 LSNGGFKPSR PPRPSRPPPP TPRRPASVNG SPSATSESDG SSTGSLPPTN ENSP00000262650/1-903 LSNGGFKPSR PPRPSRPPPP TPRRPASVNG SPSATSESDG SSTGSLPPTN ENSBTAP00000000397/1-862 LSNGGFKPSR PPRPSRPPPP TPRRPASVNG SPSTTSESDG SSTGSLPPTN 301 350 ENSTTRP00000011805/1-861 TNSNTSEGAT SGLIIPLTIS GGSGPRPLNP VPQAPLPPGW EQRVDQHGRV BACU015547/1-864 ---------- ---------- ---------- ---------- KEYIEQQEAS bmy_00566T0/1-712 TNSNTSEGAT SGLIIPLTIS GGSGPRPLNP VPQAPLPPGW EQRVDQHGRV ENSP00000262650/1-903 TNTNTSEGAT SGLIIPLTIS GGSGPRPLNP VTQAPLPPGW EQRVDQHGRV ENSBTAP00000000397/1-862 TNSSTSEGAT SGLIIPLTIS GGAGPRPLNP IPQAPLPPGW EQRVDQHGRV 351 400 ENSTTRP00000011805/1-861 YYVDHIEKRT TW-DRPEPLP PGWERRVDNM GRIYYVDHFT RTTTWQRPTL BACU015547/1-864 VFHCFIHQVR KWFDVHSGLV FSY------L GVVYHV-FFE R--------- bmy_00566T0/1-712 YYVDHIEKRT TW-DRPEPLP PGWERRVDNM GRIYYVDHFT RTTTWQRPTL ENSP00000262650/1-903 YYVDHVEKRT TW-DRPEPLP PGWERRVDNM GRIYYVDHFT RTTTWQRPTL ENSBTAP00000000397/1-862 YYVDHIEKRT TW-DRPEPLP PGWERRVDNM GRIYYVDHFT RTTTWQRPTL 401 450 ENSTTRP00000011805/1-861 ESVRNYEQWQ LQRSQLQGAM QQFNQRFIYG NQDLFATSQN KEFDPLGPLP BACU015547/1-864 ---------- ---------- ---------- ---------- ---------- bmy_00566T0/1-712 ESVRNYEQWQ LQRSQLQGAM QQFNQRFIYG NQDLFATSQN KEFDPLGPLP ENSP00000262650/1-903 ESVRNYEQWQ LQRSQLQGAM QQFNQRFIYG NQDLFATSQS KEFDPLGPLP ENSBTAP00000000397/1-862 ESVRNYEQWQ LQRSQLQGAM QQFNQRFIYG NQDLFATSQN KEFDPLGPLP 451 500 ENSTTRP00000011805/1-861 PGWEKRTDSN GRVYFVNHNT RITQWEDPRN QGQLNEKPLP EGWEMRFTVD BACU015547/1-864 ---EKRTDSN GRVYFVNHNT RITQWEDPRN QGQLNEKPLP EGWEMRFTVD bmy_00566T0/1-712 PGWEKRTDSN GRVYFVNHNT RITQWEDPRN QGQLNEKPLP EGWEMRFTVD ENSP00000262650/1-903 PGWEKRTDSN GRVYFVNHNT RITQWEDPRS QGQLNEKPLP EGWEMRFTVD ENSBTAP00000000397/1-862 PGWEKRTDSN GRVYFVNHNT RITQWEDPRN QGQLNEKPLP EGWEMRFTVD 501 550 ENSTTRP00000011805/1-861 GIPYFVDHNR RTTTYIDPRT GKSALDNGPQ IAYVRDFKAK VQYFRFWCQQ BACU015547/1-864 GIPYFVDHNR RTTTYIDPRT GKSALDNGPQ IAYVRDFKAK VQYFRFWC-- bmy_00566T0/1-712 GIPYFVDHNR RTTTYIDPRT GKSALDNGPQ IAYVRDFKAK VQYFRFWCQQ ENSP00000262650/1-903 GIPYFVDHNR RTTTYIDPRT GKSALDNGPQ IAYVRDFKAK VQYFRFWCQQ ENSBTAP00000000397/1-862 GIPYFVDHNR RTTTYIDPRT GKSALDNGPQ IAYVRDFKAK VQYFRFWCQQ 551 600 ENSTTRP00000011805/1-861 LAMPQHIKIT VTRKTLFEDS FQQXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU015547/1-864 ---------- ---------- --QIMSFSPQ DLRRRLWVIF PGEEGLDYGG bmy_00566T0/1-712 LAMPQHIKIT VTRKTLFEDS FQQIMSFSPQ DLRRRLWVIF PGEEGLDYGG ENSP00000262650/1-903 LAMPQHIKIT VTRKTLFEDS FQQIMSFSPQ DLRRRLWVIF PGEEGLDYGG ENSBTAP00000000397/1-862 LAMPQHIKIT VTRKTLFEDS FQQIMSFSPQ DLRRRLWVIF PGEEGLDYGG 601 650 ENSTTRP00000011805/1-861 XXXEWFFLLS HEVLNPMYCL FEYAGKDNYC LQINPASYIN PDHLKYFRFI BACU015547/1-864 VAREWFFLLS HEVLNPMYCL FEYAGKDNYC LQINPASYIN PDHLKYFRFI bmy_00566T0/1-712 VAREWFFLLS HEVLNPMYCL FEYAGKDNYC LQINPASYIN PDHLKYFRFI ENSP00000262650/1-903 VAREWFFLLS HEVLNPMYCL FEYAGKDNYC LQINPASYIN PDHLKYFRFI ENSBTAP00000000397/1-862 VAREWFFLLS HEVLNPMYCL FEYAGKDNYC LQINPASYIN PDHLKYFRFI 651 700 ENSTTRP00000011805/1-861 GRFIAMALFH GKFIDTGFSL PFYKRILNKP VGLKDLESID PEFYNSLIWV BACU015547/1-864 GRFIAMALFH GKFIDTGFSL PFYKRILNKP VGLKDLESID PEFYNSLIWV bmy_00566T0/1-712 GRFIAMALFH GKFIDTGFSL PFYKRILNKP VGLKDLESID PEFYNSLIWV ENSP00000262650/1-903 GRFIAMALFH GKFIDTGFSL PFYKRILNKP VGLKDLESID PEFYNSLIWV ENSBTAP00000000397/1-862 GRFIAMALFH GKFIDTGFSL PFYKRILNKP VGLKDLESID PEFYNSLIWV 701 750 ENSTTRP00000011805/1-861 KENNIEECGL EMYFSVDKEI LGEIKSHDLK PNGGNILVTE ENKEEYIXXX BACU015547/1-864 KENNIEECGL EMYFSVDKEI LGEIKSHDLK PNGGNILVTE ENKEEYIRMV bmy_00566T0/1-712 KENNIEECGL EMYFSVDKEI LGEIKSHDLK PNGGNILVTE ENKEEYIRMV ENSP00000262650/1-903 KENNIEECDL EMYFSVDKEI LGEIKSHDLK PNGGNILVTE ENKEEYIRMV ENSBTAP00000000397/1-862 KENNIEECGL EMYFSVDKEI LGEIKSHDLK PNGGNILVTE ENKEEYIRMV 751 800 ENSTTRP00000011805/1-861 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU015547/1-864 AEWRLSRGVE EQTQAFFEGF NEILPQQYLQ YFDAKELEVL LCGMQEIDLN bmy_00566T0/1-712 AEWRLSRGVE EQTQAFFEGF NEILPQQYLQ YFDAKELEVL LCGMQEIDLN ENSP00000262650/1-903 AEWRLSRGVE EQTQAFFEGF NEILPQQYLQ YFDAKELEVL LCGMQEIDLN ENSBTAP00000000397/1-862 AEWRLSRGVE EQTQAFFEGF NEILPQQYLQ YFDAKELEVL LCGMQEIDLN 801 850 ENSTTRP00000011805/1-861 XXXXXXXXXX XXXXXXXXXX XXXFVKEIDN EKRMRLLQFV TGTCRLPVGG BACU015547/1-864 DWQRHAIYRH YTRTSKQIMW FWQFVKEIDN EKRMRLLQFV TGTCRLPVGG bmy_00566T0/1-712 DWQRHAIYRH YTRTSKQIMW FWQFVKEIDN EKRMRLLQFV TGTCRLPVGG ENSP00000262650/1-903 DWQRHAIYRH YARTSKQIMW FWQFVKEIDN EKRMRLLQFV TGTCRLPVGG ENSBTAP00000000397/1-862 DWQRHAIYRH YTRTSKQIMW FWQFVKEIDN EKRMRLLQFV TGTCRLPVGG 851 900 ENSTTRP00000011805/1-861 FADLMGSNGP QKFCIEKVGK ENWLPRSHTC F--------- ---------- BACU015547/1-864 FADLMGSNGP QKFCIEKVGK ENWLPRSHTC RPTLASDRLP RLSALTGGCA bmy_00566T0/1-712 FADLMGMSTG SLFL------ ---------- ---------- ---------- ENSP00000262650/1-903 FADLMGSNGP QKFCIEKVGK ENWLPRSHTC F--------- ---------- ENSBTAP00000000397/1-862 FADLMGSNGP QKFCIEKVGK ENWLPRSHTC F--------- ---------- 901 950 ENSTTRP00000011805/1-861 ---------- ---------- ---------- ---------- ---------- BACU015547/1-864 QAQRGSGTGL RAAYAELPDR SEMAEVEETL KRLQSQKGVQ GIIVVNTEGI bmy_00566T0/1-712 ---------- ---------- ---------- ---------- ---------- ENSP00000262650/1-903 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000397/1-862 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000011805/1-861 ---NRLDLPP YKSY------ ---------- ---------- ---------- BACU015547/1-864 PIKSTMDNPT TTQYANLMHN FILKARSTVR EIDPQNDLTF LRIRSKKNEI bmy_00566T0/1-712 ---------- ---Y------ ---------- ---------- ---------- ENSP00000262650/1-903 ---NRLDLPP YKSY------ ---------- ---------- ---------- ENSBTAP00000000397/1-862 ---NRLDLPP YKSY------ ---------- ---------- ---------- 1001 1050 ENSTTRP00000011805/1-861 ---------- -EQLKEK--- ---------- ---------- ---------- BACU015547/1-864 MVAPADRCKE VQQIREQHPS KIPVIIERYK GEKQLPVLDK TKFLVPDHVN bmy_00566T0/1-712 ---------- -RKLFIT--- ---------- ---------- ---------- ENSP00000262650/1-903 ---------- -EQLKEK--- ---------- ---------- ---------- ENSBTAP00000000397/1-862 ---------- -EQLKEK--- ---------- ---------- ---------- 1051 1100 ENSTTRP00000011805/1-861 ---------- ---------- ---------- ---------- ---------- BACU015547/1-864 MSELVKIIRR RLQLNPTQAF FLLVNQHSMV SVSTPIADIY EQEKDDDGFL bmy_00566T0/1-712 ---------- ---------- ---------- ---------- ---------- ENSP00000262650/1-903 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000000397/1-862 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000011805/1-861 -LLFAIEETE GFGQE BACU015547/1-864 YMVYASQETF GF--- bmy_00566T0/1-712 LLLY------ ----- ENSP00000262650/1-903 -LLFAIEETE GFGQE ENSBTAP00000000397/1-862 -LLFAIEETE GFGQE