KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 16:10:15 2014 Check: 00 .. Name: ENSP00000276594/1-571 Len: 589 Check: 1735 Weight: 1.00 Name: ENSTTRP00000012330/1-570 Len: 589 Check: 7679 Weight: 1.00 Name: ENSBTAP00000000066/1-571 Len: 589 Check: 1284 Weight: 1.00 Name: bmy_06858T0/1-586 Len: 589 Check: 4932 Weight: 1.00 Name: BACU011130/1-537 Len: 589 Check: 9171 Weight: 1.00 // 1 50 ENSP00000276594/1-571 MALPRPSEAV PQDKVCYPPE ---SSPQNLA AYYTPFPSYG HYRNSLATVE ENSTTRP00000012330/1-570 MALRLPSEAG PQDKGCYPPD RLQSSPQRLA AYYPPFQPYS HYGNTLSAAE ENSBTAP00000000066/1-571 MALRPPGEAG PQDKGCYPPD WLQGSPQHLA AYYTPFPPYG HYGNTLTAAE bmy_06858T0/1-586 MALRPPSEAG PQDKGCYPPD RLQSSPQRLA AYYPPFPPYG HYGNTLTAAE BACU011130/1-537 MALRPPSEAG PQDKGCYPPD RLQSSPQRLA AYYPPFPSYG HYGNTLTAAE 51 100 ENSP00000276594/1-571 EDFQPFRQLE AAASAAPAMP PFPFRMAPPL LSPGLGLQRE PLYDLPWYSK ENSTTRP00000012330/1-570 EGLQTFRQLE -ALSTSPSLS PFAFRMAPPL LSPGLALQRE PLYDLPWYNK ENSBTAP00000000066/1-571 EGFQPFRPLE -ALAASPALP PFGFRTAPPL LSQGLALPRE PLCDLPWYSK bmy_06858T0/1-586 EGFQTFRQLE -ALSASPALS PFAFRMAPPL LSPGLAVQRE PLYDLPWYSK BACU011130/1-537 EGFQTFRQLE -ALSASPALS PFAFRMAPSL LSPGLAVQRE PLYDLPWYSK 101 150 ENSP00000276594/1-571 LPPWYPIPHV PREVPPFLSS SHEYAGASSE DLGHQIIGGD NESGPCCGPD ENSTTRP00000012330/1-570 LPSWYPIPHR PREVPHFPNG SREFTGASSE DAGP--AGGR SDGGQCWGPE ENSBTAP00000000066/1-571 LPTWYPVPHL PREVPHFQNS SREFTGAASE DLAH--TAGR SDGGQCWGPE bmy_06858T0/1-586 LPSWYPIPHL PREVPHFPNG IREFTGASSE DAGP--VGGH SDSGQCWGPE BACU011130/1-537 LPSWYPIPHL PREVPHFPNG IREFTGASSE DAGP--AGGR SDGGQCWGPE 151 200 ENSP00000276594/1-571 TLIPPPPADA SLLPEGLRTS QLLPCSPSKQ SEDGPKPSNQ EGKSPARFQF ENSTTRP00000012330/1-570 IFVPPPPVDA SLFPERPKPS QLLPCSPRER SEDGPKLANQ XXXXXXXXXX ENSBTAP00000000066/1-571 IFVPPPPVDA SLLPERPKPS QLLSGSPSEP SEDGPKLVNR KGKASRRYHF bmy_06858T0/1-586 IFVPPPPVDA SLFPERPKPS QLLPCSPRER SEDGPKLANQ EGKASHRYHF BACU011130/1-537 IFVPPPPVDA SLFPERPKPS QLLPCSPRER SEDGPKLANQ EGKASHRYHF 201 250 ENSP00000276594/1-571 TEEDLHFVLY GVTPSLEHPA SLHHAISGLL VPPDSSGSDS LPQTLDKDSL ENSTTRP00000012330/1-570 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXSGS LPRTLDNNSL ENSBTAP00000000066/1-571 TQEDLHLVLY GVIPSPQHSA RLQHAISGLL IPTDSAGADS LPQTLDNDSL bmy_06858T0/1-586 TQEDLHLVLY GVIPSPQNSA RLHHAISGLL VPTDSSGSDS LRQTLDNDSL BACU011130/1-537 TQEDLHLVLY GVIPSPQNSA RLHHAISGLL VPTDSSGSDS LRQTLDNDSL 251 300 ENSP00000276594/1-571 QLPEG----- ---------- LCLMQTVFGE VPHFGVFCSS FIAKGVRFGP ENSTTRP00000012330/1-570 QLPEG----- ---------- LCLGHTKFGE VAHFGVFCSS PVAKGVRFGP ENSBTAP00000000066/1-571 QLPEG----- ---------- LCLQQTKFGE VAHFGVFCSS LVAKGVRFGP bmy_06858T0/1-586 QLPEGRQGSW LRFLFQHKCS LCLGRTKFGE VAHVGVFCSS PVAKGVRFGP BACU011130/1-537 QLPEG----- ---------- LCLGRTKFGE VAHVGVFCSS PVAKGVRFGP 301 350 ENSP00000276594/1-571 FQGKVVNASE VKTYGDNSVM WEIFEDGHLS HFIDGKGGTG NWMSYVNCAR ENSTTRP00000012330/1-570 FQGKVVNTSE VRTHGDNSLM WEIFEDGHLS HFIDGKGGAG NWMSYVNCAR ENSBTAP00000000066/1-571 FQGKVVNTSE VKTHGDNSLM WEIFEDGQLS HFIDGKGGAG NWMSYVNCAR bmy_06858T0/1-586 FQGKVVNTSE VRTHRDNSLM WEIFEDGHLS HFIDGKGSAG NWMSYVNCAR BACU011130/1-537 FQGKVVNTSE VRTHRDNSLM WEIFEGGHLS HFIDGKGSAG NWMSYVNCAR 351 400 ENSP00000276594/1-571 FPKEQNLVAV QCQGHIFYES CKEIHQNQEL LVWYGDCYEK FLDIPVSLQV ENSTTRP00000012330/1-570 FPMEQNLVAV QCQGQIFYES CKEIYQNQEL LVWYGDCYEK FLDIPMSLQV ENSBTAP00000000066/1-571 FPSEQNLVAV QCQGQIFYES CKEIYQNQEL LVWYGDCYEK FLDIPVSLQV bmy_06858T0/1-586 FPMEQNLVAI QCQGQIFYES CKEIYQNQEL LVWYGDCYEK FLDIPMSLRV BACU011130/1-537 FPMEQNLVAV QCQGQIFYES CKEIYQNQEL LVWYGDCYEK FLDIPMSLQV 401 450 ENSP00000276594/1-571 TEPGKQPSGP SEESAEGYRC ERCGKVFTYK YYRDKHLKYT PCVDKGDRKF ENSTTRP00000012330/1-570 IKHGKQASGP LEESAEGYRC ERCGKVFTYK YYRDKHLKYT PCVDKGDRKF ENSBTAP00000000066/1-571 LKQGKQASGS SEESAEGYRC ERCGKVFTYK YYRDKHLKYT PCVDKGDRKF bmy_06858T0/1-586 MKQGKQTSGP PEESAEGYRC ERCGKVFTYK YYRDKHLKYT PCVDKGDRKF BACU011130/1-537 MKQGKQTSGP PEESSEGYRC ERCGKVFTYK YYRDKHLKYT PCVDKGDRKF 451 500 ENSP00000276594/1-571 PCSLCKRSFE KRDRLRIHIL HVHEKHRPHK CSTCGKCFSQ SSSLNKHMRV ENSTTRP00000012330/1-570 PCSLCKRSFE KRDRLRIHVL HVHEKHRPHK CSTCGKCFSQ SSSLNKHMRV ENSBTAP00000000066/1-571 PCSLCKRSFE KRDRLRIHIL HVHEKHRPHK CSTCGKCFSQ SSSLNKHMRV bmy_06858T0/1-586 PCSLCKRSFE KRDRLRIHIL HVHEKHRPHK CSTCGKCFSQ SSSLNKHMRV BACU011130/1-537 PCSLCKRSFE KRDRLRIHIL HVHEKHRPH- ---------- ---------- 501 550 ENSP00000276594/1-571 HSGDRPYQCV YCTKRFTASS ILRTHIRQHS GEKPFKCKYC GKSFASHAAH ENSTTRP00000012330/1-570 HSGDRPYHCV YC-KRFTASS ILRTHIRQHS GEKPFKCKYC GKSFASHAAH ENSBTAP00000000066/1-571 HSGDRPYHCV YCTKKFTASS ILRTHIRQHS GEKPFKCKYC GKSFASHAAH bmy_06858T0/1-586 HSGDRPYHCV YCTKKFTASS ILRTHIRQHS GEKPFKCKYC GKSFASHAAH BACU011130/1-537 ---------- ---KKFTASS ILRTHIRQHS GEKPFKCKYC GKSFASHAAH 551 600 ENSP00000276594/1-571 DSHVRRSHKE DDGCSCSICG KIFSDQETFY SHMKFHEDY ENSTTRP00000012330/1-570 DSHVRRSHKE DDGCSCNICG KTFPGQEAFY SHMKFHENC ENSBTAP00000000066/1-571 DSHVRRSHRE DDGSPCNTCG KTFSDQEAFH SHMKSHEDC bmy_06858T0/1-586 DSHVRRSHKE EDSXSCNICG KTFPDQEAFY SHMKFHEDC BACU011130/1-537 DSHVRRSHKE EDSGSCNKCG KTFPDQETFY AHMKFHEDC